PDB Short entry for 1BV1
HEADER    ALLERGEN                                08-JUL-97   1BV1              
TITLE     BIRCH POLLEN ALLERGEN BET V 1                                         
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: BET V 1;                                                   
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: MAJOR POLLEN ALLERGEN BET V 1-A;                            
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: BETULA PENDULA;                                 
SOURCE   3 ORGANISM_COMMON: EUROPEAN WHITE BIRCH;                               
SOURCE   4 ORGANISM_TAXID: 3505;                                                
SOURCE   5 CELL: POLLEN;                                                        
SOURCE   6 CELLULAR_LOCATION: CYTOPLASM;                                        
SOURCE   7 GENE: BET V 1 1.2801;                                                
SOURCE   8 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   9 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE  10 EXPRESSION_SYSTEM_STRAIN: DH5-ALPHA;                                 
SOURCE  11 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM;                      
SOURCE  12 EXPRESSION_SYSTEM_VECTOR_TYPE: PROTEIN FUSION;                       
SOURCE  13 EXPRESSION_SYSTEM_VECTOR: P-MALC;                                    
SOURCE  14 EXPRESSION_SYSTEM_PLASMID: PMALC;                                    
SOURCE  15 EXPRESSION_SYSTEM_GENE: MALE-BET V 1;                                
SOURCE  16 OTHER_DETAILS: COMMERCIALLY AVAILABLE POLLEN FROM ALLERGEN,          
SOURCE  17 SWEDEN                                                               
KEYWDS    ALLERGEN, PATHOGENESIS-RELATED PROTEIN                                
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    M.GAJHEDE,P.OSMARK,F.M.POULSEN,H.IPSEN,J.N.LARSON,                    
AUTHOR   2 R.J.JOOSTVAN,C.SCHOU,H.LOWENSTEIN,M.D.SPANGFORT                      
REVDAT   3   24-FEB-09 1BV1    1       VERSN                                    
REVDAT   2   01-APR-03 1BV1    1       JRNL                                     
REVDAT   1   17-SEP-97 1BV1    0                                                
JRNL        AUTH   M.GAJHEDE,P.OSMARK,F.M.POULSEN,H.IPSEN,J.N.LARSEN,           
JRNL        AUTH 2 R.J.JOOST VAN NEERVEN,C.SCHOU,H.LOWENSTEIN,                  
JRNL        AUTH 3 M.D.SPANGFORT                                                
JRNL        TITL   X-RAY AND NMR STRUCTURE OF BET V 1, THE ORIGIN OF            
JRNL        TITL 2 BIRCH POLLEN ALLERGY.                                        
JRNL        REF    NAT.STRUCT.BIOL.              V.   3  1040 1996              
JRNL        REFN                   ISSN 1072-8368                               
JRNL        PMID   8946858                                                      
JRNL        DOI    10.1038/NSB1296-1040                                         
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.00 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR 3.851                                         
REMARK   3   AUTHORS     : BRUNGER                                              
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 40.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 1000000.000                    
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 95.9                           
REMARK   3   NUMBER OF REFLECTIONS             : 9509                           
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.198                           
REMARK   3   FREE R VALUE                     : 0.267                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 10.400                          
REMARK   3   FREE R VALUE TEST SET COUNT      : 986                             
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.022                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 8                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.00                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.09                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 78.00                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 955                          
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2630                       
REMARK   3   BIN FREE R VALUE                    : 0.3110                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 9.50                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 105                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : NULL                         
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 1230                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 0                                       
REMARK   3   SOLVENT ATOMS            : 84                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 14.60                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 25.20                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.31                            
REMARK   3   ESD FROM SIGMAA              (A) : NULL                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 40.00                           
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : NULL                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : NULL                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.006                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.20                            
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 25.70                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 1.12                            
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 2.170 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 3.170 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 4.500 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 6.970 ; 2.500                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PARHCSDSDX.PRO                                 
REMARK   3  PARAMETER FILE  2  : PARAM19.SOL                                    
REMARK   3  PARAMETER FILE  3  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : TOPHCSDX.PRO                                   
REMARK   3  TOPOLOGY FILE  2   : TOPH19.SOL                                     
REMARK   3  TOPOLOGY FILE  3   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION                   
REMARK   4                                                                      
REMARK   4 1BV1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.                                
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : JAN-96                             
REMARK 200  TEMPERATURE           (KELVIN) : 287                                
REMARK 200  PH                             : 6.3                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU RUH2R                       
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : GRAPHITE(002)                      
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU                             
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 9554                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.000                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 30.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 95.8                               
REMARK 200  DATA REDUNDANCY                : 4.800                              
REMARK 200  R MERGE                    (I) : 0.06800                            
REMARK 200  R SYM                      (I) : 0.06800                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 14.6000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.03                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 84.2                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 3.20                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.36000                            
REMARK 200  R SYM FOR SHELL            (I) : 0.36000                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.800                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: NULL                                           
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR                          
REMARK 200 SOFTWARE USED: X-PLOR 3.851                                          
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 41.00                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED BY MIXING       
REMARK 280  5 MG/ML PROTEIN SOLUTION WITH EQUAL AMOUNT OF 2.0 M AMS, 100        
REMARK 280  MM SODIUM CITRATE, PH 6.3                                           
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -X,Y,-Z+1/2                                             
REMARK 290       4555   X,-Y,-Z                                                 
REMARK 290       5555   X+1/2,Y+1/2,Z                                           
REMARK 290       6555   -X+1/2,-Y+1/2,Z+1/2                                     
REMARK 290       7555   -X+1/2,Y+1/2,-Z+1/2                                     
REMARK 290       8555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       59.06000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       59.06000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000       16.08000            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       37.12000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   6 -1.000000  0.000000  0.000000       16.08000            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       37.12000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       59.06000            
REMARK 290   SMTRY1   7 -1.000000  0.000000  0.000000       16.08000            
REMARK 290   SMTRY2   7  0.000000  1.000000  0.000000       37.12000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000       59.06000            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000       16.08000            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000       37.12000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   2  0.000000 -1.000000  0.000000       74.24000            
REMARK 350   BIOMT3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLU A  60      -52.98    -12.48                                   
REMARK 500    ASP A  93      -95.49     62.49                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  1BV1 A    1   159  UNP    P15494   BEV1A_BETVE      2    160             
SEQRES   1 A  159  GLY VAL PHE ASN TYR GLU THR GLU THR THR SER VAL ILE          
SEQRES   2 A  159  PRO ALA ALA ARG LEU PHE LYS ALA PHE ILE LEU ASP GLY          
SEQRES   3 A  159  ASP ASN LEU PHE PRO LYS VAL ALA PRO GLN ALA ILE SER          
SEQRES   4 A  159  SER VAL GLU ASN ILE GLU GLY ASN GLY GLY PRO GLY THR          
SEQRES   5 A  159  ILE LYS LYS ILE SER PHE PRO GLU GLY LEU PRO PHE LYS          
SEQRES   6 A  159  TYR VAL LYS ASP ARG VAL ASP GLU VAL ASP HIS THR ASN          
SEQRES   7 A  159  PHE LYS TYR ASN TYR SER VAL ILE GLU GLY GLY PRO ILE          
SEQRES   8 A  159  GLY ASP THR LEU GLU LYS ILE SER ASN GLU ILE LYS ILE          
SEQRES   9 A  159  VAL ALA THR PRO ASP GLY GLY SER ILE LEU LYS ILE SER          
SEQRES  10 A  159  ASN LYS TYR HIS THR LYS GLY ASP HIS GLU VAL LYS ALA          
SEQRES  11 A  159  GLU GLN VAL LYS ALA SER LYS GLU MET GLY GLU THR LEU          
SEQRES  12 A  159  LEU ARG ALA VAL GLU SER TYR LEU LEU ALA HIS SER ASP          
SEQRES  13 A  159  ALA TYR ASN                                                  
FORMUL   2  HOH   *84(H2 O)                                                     
HELIX    1   1 ALA A   15  PHE A   22  1                                   8    
HELIX    2   2 GLY A   26  VAL A   33  1                                   8    
HELIX    3   3 ALA A  130  ALA A  153  1                                  24    
SHEET    1   A 5 VAL A   2  SER A  11  0                                        
SHEET    2   A 5 SER A 112  THR A 122 -1  N  TYR A 120   O  PHE A   3           
SHEET    3   A 5 LEU A  95  ALA A 106 -1  N  VAL A 105   O  ILE A 113           
SHEET    4   A 5 LYS A  80  VAL A  85 -1  N  VAL A  85   O  ILE A  98           
SHEET    5   A 5 GLU A  73  ASP A  75 -1  N  ASP A  75   O  LYS A  80           
SHEET    1   B 4 SER A  40  GLU A  45  0                                        
SHEET    2   B 4 ILE A  53  SER A  57 -1  N  SER A  57   O  SER A  40           
SHEET    3   B 4 TYR A  66  VAL A  71 -1  N  ASP A  69   O  LYS A  54           
SHEET    4   B 4 TYR A  83  GLY A  88 -1  N  GLU A  87   O  LYS A  68           
CRYST1   32.160   74.240  118.120  90.00  90.00  90.00 C 2 2 21      8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.031095  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.013470  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.008466        0.00000