PDB Short entry for 1BXL HEADER COMPLEX (APOPTOSIS/PEPTIDE) 16-OCT-96 1BXL TITLE STRUCTURE OF BCL-XL/BAK PEPTIDE COMPLEX, NMR, MINIMIZED AVERAGE TITLE 2 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-XL; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BAK PEPTIDE; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RESIDUES 572 - 587 OF BAK PROTEIN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: HMS174 (DE3); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET29B; SOURCE 8 EXPRESSION_SYSTEM_GENE: HUMAN BCL-XL, RESIDUES 1-44, 85-205, SOURCE 9 DELETION MUTANT LACKING A FLEXIBLE LOOP (RESIDUES 45-84) AND THE C- SOURCE 10 TERMINAL HYDROPHOBIC REGION, WITH A C-TERMINAL HIS-TAG; SOURCE 11 MOL_ID: 2 KEYWDS APOPTOSIS, ALTERNATIVE SPLICING, COMPLEX (APOPTOSIS-PEPTIDE), COMPLEX KEYWDS 2 (APOPTOSIS-PEPTIDE) COMPLEX EXPDTA SOLUTION NMR AUTHOR M.SATTLER,H.LIANG,D.NETTESHEIM,R.P.MEADOWS,J.E.HARLAN,M.EBERSTADT, AUTHOR 2 H.YOON,S.B.SHUKER,B.S.CHANG,A.J.MINN,C.B.THOMPSON,S.W.FESIK REVDAT 3 16-FEB-22 1BXL 1 REMARK REVDAT 2 24-FEB-09 1BXL 1 VERSN REVDAT 1 29-OCT-97 1BXL 0 JRNL AUTH M.SATTLER,H.LIANG,D.NETTESHEIM,R.P.MEADOWS,J.E.HARLAN, JRNL AUTH 2 M.EBERSTADT,H.S.YOON,S.B.SHUKER,B.S.CHANG,A.J.MINN, JRNL AUTH 3 C.B.THOMPSON,S.W.FESIK JRNL TITL STRUCTURE OF BCL-XL-BAK PEPTIDE COMPLEX: RECOGNITION BETWEEN JRNL TITL 2 REGULATORS OF APOPTOSIS. JRNL REF SCIENCE V. 275 983 1997 JRNL REFN ISSN 0036-8075 JRNL PMID 9020082 JRNL DOI 10.1126/SCIENCE.275.5302.983 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172135. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NMR SPECTRA WERE RECORDED ON 1-3 MM SOLUTIONS OF BCL-XL REMARK 210 COMPLEXED WITH A BAK PEPTIDE IN 10 MM SODIUM PHOSPHATE BUFFER REMARK 210 (PH 6.5) AT 303K. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 MET A 45 REMARK 465 GLU A 46 REMARK 465 THR A 47 REMARK 465 PRO A 48 REMARK 465 SER A 49 REMARK 465 ALA A 50 REMARK 465 ILE A 51 REMARK 465 ASN A 52 REMARK 465 GLY A 53 REMARK 465 ASN A 54 REMARK 465 PRO A 55 REMARK 465 SER A 56 REMARK 465 TRP A 57 REMARK 465 HIS A 58 REMARK 465 LEU A 59 REMARK 465 ALA A 60 REMARK 465 ASP A 61 REMARK 465 SER A 62 REMARK 465 PRO A 63 REMARK 465 ALA A 64 REMARK 465 VAL A 65 REMARK 465 ASN A 66 REMARK 465 GLY A 67 REMARK 465 ALA A 68 REMARK 465 THR A 69 REMARK 465 GLY A 70 REMARK 465 HIS A 71 REMARK 465 SER A 72 REMARK 465 SER A 73 REMARK 465 SER A 74 REMARK 465 LEU A 75 REMARK 465 ASP A 76 REMARK 465 ALA A 77 REMARK 465 ARG A 78 REMARK 465 GLU A 79 REMARK 465 VAL A 80 REMARK 465 ILE A 81 REMARK 465 PRO A 82 REMARK 465 MET A 83 REMARK 465 ALA A 84 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -2 -179.96 -68.64 REMARK 500 MET A -1 -36.93 175.91 REMARK 500 ALA A 0 37.94 -166.28 REMARK 500 LYS A 20 -76.04 -55.72 REMARK 500 GLU A 32 -159.66 -62.29 REMARK 500 ASN A 33 77.46 66.94 REMARK 500 GLU A 36 -34.74 80.83 REMARK 500 ALA A 37 162.57 67.41 REMARK 500 GLU A 39 -38.80 -177.08 REMARK 500 GLU A 44 -78.06 -57.25 REMARK 500 PHE A 105 -73.41 -152.21 REMARK 500 SER A 106 -163.17 -178.08 REMARK 500 LEU A 108 -64.33 -100.45 REMARK 500 ILE A 114 135.35 65.03 REMARK 500 THR A 115 148.17 173.93 REMARK 500 PHE A 131 96.74 -63.09 REMARK 500 ASP A 133 -44.35 -160.14 REMARK 500 ASP A 176 -70.40 -122.47 REMARK 500 ASN A 185 54.81 -142.18 REMARK 500 GLU A 208 -83.73 57.88 REMARK 500 ARG A 209 -90.26 -39.36 REMARK 500 HIS A 212 -31.36 172.71 REMARK 500 HIS A 213 109.84 4.01 REMARK 500 HIS A 215 23.40 -152.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 6 0.25 SIDE CHAIN REMARK 500 ARG A 34 0.32 SIDE CHAIN REMARK 500 ARG A 91 0.31 SIDE CHAIN REMARK 500 ARG A 100 0.23 SIDE CHAIN REMARK 500 ARG A 102 0.32 SIDE CHAIN REMARK 500 ARG A 103 0.31 SIDE CHAIN REMARK 500 ARG A 132 0.21 SIDE CHAIN REMARK 500 ARG A 139 0.32 SIDE CHAIN REMARK 500 ARG A 165 0.23 SIDE CHAIN REMARK 500 ARG A 204 0.29 SIDE CHAIN REMARK 500 ARG A 209 0.31 SIDE CHAIN REMARK 500 ARG B 576 0.25 SIDE CHAIN REMARK 500 ARG B 587 0.29 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1BXL A 1 209 UNP Q07817 BCLX_HUMAN 1 209 DBREF 1BXL B 572 587 UNP Q16611 BAK_HUMAN 72 87 SEQRES 1 A 221 MET SER MET ALA MET SER GLN SER ASN ARG GLU LEU VAL SEQRES 2 A 221 VAL ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY TYR SEQRES 3 A 221 SER TRP SER GLN PHE SER ASP VAL GLU GLU ASN ARG THR SEQRES 4 A 221 GLU ALA PRO GLU GLY THR GLU SER GLU MET GLU THR PRO SEQRES 5 A 221 SER ALA ILE ASN GLY ASN PRO SER TRP HIS LEU ALA ASP SEQRES 6 A 221 SER PRO ALA VAL ASN GLY ALA THR GLY HIS SER SER SER SEQRES 7 A 221 LEU ASP ALA ARG GLU VAL ILE PRO MET ALA ALA VAL LYS SEQRES 8 A 221 GLN ALA LEU ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG SEQRES 9 A 221 TYR ARG ARG ALA PHE SER ASP LEU THR SER GLN LEU HIS SEQRES 10 A 221 ILE THR PRO GLY THR ALA TYR GLN SER PHE GLU GLN VAL SEQRES 11 A 221 VAL ASN GLU LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG SEQRES 12 A 221 ILE VAL ALA PHE PHE SER PHE GLY GLY ALA LEU CYS VAL SEQRES 13 A 221 GLU SER VAL ASP LYS GLU MET GLN VAL LEU VAL SER ARG SEQRES 14 A 221 ILE ALA ALA TRP MET ALA THR TYR LEU ASN ASP HIS LEU SEQRES 15 A 221 GLU PRO TRP ILE GLN GLU ASN GLY GLY TRP ASP THR PHE SEQRES 16 A 221 VAL GLU LEU TYR GLY ASN ASN ALA ALA ALA GLU SER ARG SEQRES 17 A 221 LYS GLY GLN GLU ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 16 GLY GLN VAL GLY ARG GLN LEU ALA ILE ILE GLY ASP ASP SEQRES 2 B 16 ILE ASN ARG HELIX 1 1 GLN A 3 LYS A 20 1 18 HELIX 2 2 SER A 25 PHE A 27 5 3 HELIX 3 3 GLU A 42 ALA A 104 1 23 HELIX 4 4 ALA A 119 LEU A 130 1 12 HELIX 5 5 ARG A 139 LYS A 157 1 19 HELIX 6 6 GLN A 160 ASP A 176 1 17 HELIX 7 7 GLU A 179 ASN A 185 1 7 HELIX 8 8 GLY A 187 LEU A 194 1 8 HELIX 9 9 ALA A 199 ARG A 204 1 6 HELIX 10 10 ARG B 576 ASP B 584 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000