PDB Short entry for 1CDK HEADER TRANSFERASE/TRANSFERASE INHIBITOR 04-JUL-94 1CDK TITLE CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT (E.C.2.7.1.37) TITLE 2 (PROTEIN KINASE A) COMPLEXED WITH PROTEIN KINASE INHIBITOR PEPTIDE TITLE 3 FRAGMENT 5-24 (PKI(5-24) ISOELECTRIC VARIANT CA) AND MN2+ ADENYLYL TITLE 4 IMIDODIPHOSPHATE (MNAMP-PNP) AT PH 5.6 AND 7C AND 4C COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN KINASE A; COMPND 5 EC: 2.7.11.11; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN KINASE INHIBITOR; COMPND 8 CHAIN: I, J; COMPND 9 SYNONYM: PKI(5-24); COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: HEART; SOURCE 6 TISSUE: HEART ISOFORM CA; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS COMPLEX (TRANSFERASE-INHIBITOR), TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.BOSSEMEYER,R.A.ENGH,V.KINZEL,H.PONSTINGL,R.HUBER REVDAT 5 01-AUG-12 1CDK 1 REVDAT 4 18-JUL-12 1CDK 1 HEADER SITE SOURCE VERSN REVDAT 3 24-FEB-09 1CDK 1 VERSN REVDAT 2 01-APR-03 1CDK 1 JRNL REVDAT 1 15-OCT-95 1CDK 0 JRNL AUTH D.BOSSEMEYER,R.A.ENGH,V.KINZEL,H.PONSTINGL,R.HUBER JRNL TITL PHOSPHOTRANSFERASE AND SUBSTRATE BINDING MECHANISM OF THE JRNL TITL 2 CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT FROM PORCINE JRNL TITL 3 HEART AS DEDUCED FROM THE 2.0 A STRUCTURE OF THE COMPLEX JRNL TITL 4 WITH MN2+ ADENYLYL IMIDODIPHOSPHATE AND INHIBITOR PEPTIDE JRNL TITL 5 PKI(5-24). JRNL REF EMBO J. V. 12 849 1993 JRNL REFN ISSN 0261-4189 JRNL PMID 8384554 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.ZHENG,E.A.TRAFNY,D.R.KNIGHTON,N.-H.XUONG,S.S.TAYLOR, REMARK 1 AUTH 2 L.F.TEN EYCK,J.M.SOWADSKI REMARK 1 TITL 2.2 ANGSTROM REFINED CRYSTAL STRUCTURE OF THE CATALYTIC REMARK 1 TITL 2 SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE COMPLEXED WITH REMARK 1 TITL 3 MNATP AND A PEPTIDE INHIBITOR REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 49 362 1993 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.ZHENG,D.R.KNIGHTON,N.-H.XUONG,S.S.TAYLOR,J.M.SOWADSKI, REMARK 1 AUTH 2 L.F.TEN EYCK REMARK 1 TITL CRYSTAL STRUCTURES OF THE MYRISTYLATED CATALYTIC SUBUNIT REMARK 1 TITL 2 OFCAMP-DEPENDENT KINASE REVEAL OPEN AND CLOSED CONFORMATION REMARK 1 REF PROTEIN SCI. V. 2 1559 1993 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.R.KNIGHTON,J.H.ZHENG,L.F.TEN EYCK,V.A.ASHFORD,N.-H.XUONG, REMARK 1 AUTH 2 S.S.TAYLOR,J.M.SOWADSKI REMARK 1 TITL CRYSTAL STRUCTURE OF THE CATALYTIC SUBUNIT OF CYCLIC REMARK 1 TITL 2 ADENOSINE MONOPHOSPHATE DEPENDENT-PROTEIN KINASE REMARK 1 REF SCIENCE V. 253 407 1991 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 4 REMARK 1 AUTH D.R.KNIGHTON,J.ZHENG,L.F.TEN EYCK,N.-H.XOUNG,S.S.TAYLOR, REMARK 1 AUTH 2 J.M.SOWADSKI REMARK 1 TITL STRUCTURE OF A PEPTIDE INHIBITOR BOUND TO THE CATALYTIC REMARK 1 TITL 2 SUBUNIT OF A CYCLIC ADENOSINE MONOPHOSPHATE-DEPENDENT REMARK 1 TITL 3 PROTEIN KINASE REMARK 1 REF SCIENCE V. 253 414 1991 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 5 REMARK 1 AUTH M.THELEN,A.ROSEN,A.C.NAIRN,A.ADEREM REMARK 1 TITL REGULATION BY PHOSPHORYLATION OF REVERSIBLE ASSOCIATION OF A REMARK 1 TITL 2 MYRISTOYLATED PROTEIN KINASE C SUBSTRATE WITH THE PLASMA REMARK 1 TITL 3 MEMBRANE REMARK 1 REF NATURE V. 351 320 1991 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 6 REMARK 1 AUTH A.HOTZ,N.KONIG,J.KRETSCHMER,G.MAIER,H.PONSTINGL,V.KINZEL REMARK 1 TITL A SEQUENCE VARIANT IN THE N-TERMINAL REGION OF THE CATALYTIC REMARK 1 TITL 2 SUBUNIT OF THE CAMP-DEPENDENT PROTEIN KINASE REMARK 1 REF FEBS LETT. V. 256 115 1989 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 7 REMARK 1 AUTH J.C.CHRIVIA,M.D.UHLER,G.S.MCKNIGHT REMARK 1 TITL CHARACTERIZATION OF GENOMIC CLONES CODING FOR THE C-ALPHA REMARK 1 TITL 2 AND C-BETA SUBUNITS OF MOUSE CAMP DEPENDENT PROTEIN KINASE REMARK 1 REF J.BIOL.CHEM. V. 263 5739 1988 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 5.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 49638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5971 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.025 REMARK 3 BOND ANGLES (DEGREES) : 2.96 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58447 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.6, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.15960 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.03333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.15960 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 55.03333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MTRIX REMARK 300 THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW REMARK 300 DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE REMARK 300 VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE REMARK 300 MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED REMARK 300 SECOND. REMARK 300 REMARK 300 APPLIED TO TRANSFORMED TO REMARK 300 MTRIX RESIDUES RESIDUES RMSD REMARK 300 M1 B 8 .. B 317 A 8 .. A 317 0.265 REMARK 300 M1 B 322 .. B 350 A 322 .. A 350 0.347 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 GLY B 1 REMARK 465 ASN B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 LYS B 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CB REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 LYS A 8 REMARK 475 PHE A 318 REMARK 475 LYS A 319 REMARK 475 GLY A 320 REMARK 475 PRO A 321 REMARK 475 LYS B 8 REMARK 475 PHE B 318 REMARK 475 LYS B 319 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 28 CE NZ REMARK 480 ASN A 36 CG OD1 ND2 REMARK 480 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 480 THR A 65 OG1 CG2 REMARK 480 GLN A 77 CD OE1 NE2 REMARK 480 LYS A 81 CG CD CE NZ REMARK 480 LYS A 83 CE NZ REMARK 480 GLN A 242 CD OE1 NE2 REMARK 480 LYS A 254 CD CE NZ REMARK 480 ARG A 256 CD NE CZ NH1 NH2 REMARK 480 LYS A 279 CG CD CE NZ REMARK 480 LYS A 285 CG CD CE NZ REMARK 480 GLU A 311 CG CD OE1 OE2 REMARK 480 LYS A 317 CG CD CE NZ REMARK 480 GLY A 322 N REMARK 480 ASP A 323 N REMARK 480 GLU A 331 CD OE1 OE2 REMARK 480 GLU A 333 CD OE1 OE2 REMARK 480 GLU A 334 CB CG CD OE1 OE2 REMARK 480 ILE A 335 CG1 CG2 CD1 REMARK 480 LYS A 345 CD CE NZ REMARK 480 ASP I 20 C O CB CG OD1 OD2 OXT REMARK 480 GLY B 9 N REMARK 480 SER B 10 CB OG REMARK 480 GLU B 11 CG CD OE1 OE2 REMARK 480 GLN B 12 CD OE1 NE2 REMARK 480 GLU B 13 CB CG CD OE1 OE2 REMARK 480 LYS B 16 CG CD CE NZ REMARK 480 GLU B 17 CG CD OE1 OE2 REMARK 480 LYS B 28 NZ REMARK 480 GLN B 176 CD OE1 NE2 REMARK 480 LYS B 254 CD CE NZ REMARK 480 ARG B 256 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 279 CD CE NZ REMARK 480 LYS B 285 CG CD CE NZ REMARK 480 LYS B 295 NZ REMARK 480 LYS B 317 CG CD CE NZ REMARK 480 GLU B 331 CB CG CD OE1 OE2 REMARK 480 GLU B 333 CG CD OE1 OE2 REMARK 480 GLU B 334 CB CG CD OE1 OE2 REMARK 480 ILE B 335 CG1 CG2 CD1 REMARK 480 ARG B 336 NE CZ NH1 NH2 REMARK 480 LYS B 345 CE NZ REMARK 480 ASP J 20 CA C O CB CG OD1 OD2 REMARK 480 ASP J 20 OXT REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 179 CE2 TYR A 179 CD2 0.093 REMARK 500 ASP A 323 N ASP A 323 CA -0.198 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 29 CD - CE - NZ ANGL. DEV. = -15.7 DEGREES REMARK 500 LYS A 92 CD - CE - NZ ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 93 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 112 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 MET A 118 CG - SD - CE ANGL. DEV. = -11.9 DEGREES REMARK 500 MET A 128 CG - SD - CE ANGL. DEV. = -18.8 DEGREES REMARK 500 SER A 130 CA - CB - OG ANGL. DEV. = -17.1 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 144 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 157 CB - CG - CD1 ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG A 165 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 175 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ASP A 184 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 194 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 194 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR A 215 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 220 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 VAL A 226 CG1 - CB - CG2 ANGL. DEV. = -10.7 DEGREES REMARK 500 GLU A 230 OE1 - CD - OE2 ANGL. DEV. = -7.5 DEGREES REMARK 500 LYS A 266 CD - CE - NZ ANGL. DEV. = 17.5 DEGREES REMARK 500 ARG A 270 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 VAL A 288 CG1 - CB - CG2 ANGL. DEV. = -11.6 DEGREES REMARK 500 ILE A 303 CG1 - CB - CG2 ANGL. DEV. = -17.6 DEGREES REMARK 500 ARG A 308 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 323 N - CA - CB ANGL. DEV. = 23.0 DEGREES REMARK 500 GLY A 322 CA - C - N ANGL. DEV. = -27.2 DEGREES REMARK 500 GLY A 322 O - C - N ANGL. DEV. = 18.5 DEGREES REMARK 500 ASP A 329 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP A 329 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 336 CG - CD - NE ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG A 336 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG I 14 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 GLY B 9 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 ASP B 41 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 LYS B 61 CD - CE - NZ ANGL. DEV. = 14.3 DEGREES REMARK 500 MET B 71 CG - SD - CE ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG B 93 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LYS B 105 CD - CE - NZ ANGL. DEV. = 14.1 DEGREES REMARK 500 TYR B 108 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 ASP B 112 CB - CG - OD1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ASP B 112 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 MET B 128 CG - SD - CE ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG B 133 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 133 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 144 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 161 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP B 175 CB - CG - OD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP B 184 CB - CG - OD1 ANGL. DEV. = 13.2 DEGREES REMARK 500 ASP B 241 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 55 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 36 72.55 17.08 REMARK 500 ILE A 46 -89.37 -63.05 REMARK 500 ASP A 112 -155.49 -151.47 REMARK 500 ARG A 165 -3.52 78.16 REMARK 500 LYS A 168 147.48 -170.12 REMARK 500 THR A 183 -166.20 -113.76 REMARK 500 ASP A 184 80.03 47.38 REMARK 500 LEU A 198 99.41 -68.20 REMARK 500 ALA A 240 -175.16 -172.83 REMARK 500 LEU A 273 39.24 -86.95 REMARK 500 ARG I 11 55.80 -113.94 REMARK 500 HIS I 19 -9.46 -140.57 REMARK 500 ILE B 46 -70.89 -74.89 REMARK 500 ASP B 166 34.93 -140.65 REMARK 500 ASP B 184 76.29 50.82 REMARK 500 ALA B 240 -169.71 -170.37 REMARK 500 LEU B 273 43.58 -101.79 REMARK 500 LEU B 277 1.49 -65.09 REMARK 500 PRO B 321 119.95 -37.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 108 0.08 SIDE CHAIN REMARK 500 TYR A 164 0.07 SIDE CHAIN REMARK 500 PHE A 239 0.09 SIDE CHAIN REMARK 500 TYR A 247 0.08 SIDE CHAIN REMARK 500 TYR A 306 0.10 SIDE CHAIN REMARK 500 ARG A 336 0.18 SIDE CHAIN REMARK 500 TYR I 3 0.07 SIDE CHAIN REMARK 500 ARG I 14 0.11 SIDE CHAIN REMARK 500 PHE B 18 0.07 SIDE CHAIN REMARK 500 PHE B 43 0.09 SIDE CHAIN REMARK 500 PHE B 69 0.09 SIDE CHAIN REMARK 500 TYR B 122 0.08 SIDE CHAIN REMARK 500 TYR B 146 0.06 SIDE CHAIN REMARK 500 HIS B 158 0.13 SIDE CHAIN REMARK 500 TYR B 229 0.09 SIDE CHAIN REMARK 500 PHE B 238 0.07 SIDE CHAIN REMARK 500 TYR B 306 0.07 SIDE CHAIN REMARK 500 TYR B 330 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 23 -11.16 REMARK 500 THR A 51 -10.58 REMARK 500 ASP A 166 11.73 REMARK 500 TYR A 179 10.12 REMARK 500 ASP A 184 -12.23 REMARK 500 VAL A 191 11.16 REMARK 500 PRO A 202 -13.05 REMARK 500 GLU A 203 12.11 REMARK 500 ALA A 218 10.43 REMARK 500 ASP A 220 12.21 REMARK 500 PRO A 243 -11.88 REMARK 500 LEU A 273 -11.12 REMARK 500 GLY A 287 -13.20 REMARK 500 TRP A 302 -11.55 REMARK 500 ILE A 315 12.61 REMARK 500 GLY A 322 -11.24 REMARK 500 GLU A 332 13.26 REMARK 500 GLU A 341 11.56 REMARK 500 LYS A 345 -11.91 REMARK 500 SER I 9 -11.93 REMARK 500 ARG I 14 10.90 REMARK 500 ARG I 15 12.18 REMARK 500 LYS B 28 -10.86 REMARK 500 LEU B 40 -11.64 REMARK 500 VAL B 98 12.33 REMARK 500 ALA B 143 -11.86 REMARK 500 ASP B 166 12.70 REMARK 500 LEU B 167 11.11 REMARK 500 ASP B 175 -10.09 REMARK 500 VAL B 191 12.05 REMARK 500 THR B 195 11.04 REMARK 500 SER B 212 11.94 REMARK 500 ALA B 218 12.88 REMARK 500 LEU B 224 -12.43 REMARK 500 VAL B 226 -12.40 REMARK 500 ASP B 264 -11.23 REMARK 500 LEU B 268 -10.54 REMARK 500 LYS B 292 11.64 REMARK 500 LYS B 317 -12.46 REMARK 500 TYR B 330 -13.23 REMARK 500 ASP J 5 -11.82 REMARK 500 SER J 9 -15.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 25 24.5 L L OUTSIDE RANGE REMARK 500 ASP A 41 13.0 L L OUTSIDE RANGE REMARK 500 LYS A 78 20.8 L L OUTSIDE RANGE REMARK 500 VAL A 80 24.0 L L OUTSIDE RANGE REMARK 500 LYS A 105 23.1 L L OUTSIDE RANGE REMARK 500 ILE A 135 22.6 L L OUTSIDE RANGE REMARK 500 ARG A 165 24.9 L L OUTSIDE RANGE REMARK 500 LYS A 192 8.3 L L EXPECTING SP3 REMARK 500 PRO A 202 24.3 L L OUTSIDE RANGE REMARK 500 ASP A 323 14.6 L L OUTSIDE RANGE REMARK 500 SER A 338 24.0 L L OUTSIDE RANGE REMARK 500 LEU B 27 24.6 L L OUTSIDE RANGE REMARK 500 GLU B 140 24.9 L L OUTSIDE RANGE REMARK 500 ARG B 280 25.0 L L OUTSIDE RANGE REMARK 500 PHE B 318 22.5 L L OUTSIDE RANGE REMARK 500 PHE B 347 18.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MYR A 403 REMARK 610 MYR B 403 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 171 OD1 REMARK 620 2 ANP A 400 O2G 123.9 REMARK 620 3 HOH A 451 O 97.9 92.9 REMARK 620 4 ANP A 400 O2A 98.5 137.3 85.4 REMARK 620 5 ASP A 184 OD2 91.9 79.8 170.0 95.3 REMARK 620 6 ANP A 400 N3B 174.8 60.3 84.5 77.0 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 184 OD1 REMARK 620 2 ASP A 184 OD2 60.2 REMARK 620 3 HOH A 514 O 99.6 155.5 REMARK 620 4 HOH A 436 O 101.8 83.2 88.1 REMARK 620 5 ANP A 400 O1G 155.7 105.4 98.2 95.2 REMARK 620 6 ANP A 400 O2B 77.1 97.0 91.1 178.5 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 171 OD1 REMARK 620 2 ANP B 400 O2G 118.8 REMARK 620 3 HOH B 449 O 95.4 95.7 REMARK 620 4 ANP B 400 O2A 94.6 146.5 82.7 REMARK 620 5 ANP B 400 N3B 174.4 66.0 86.7 80.5 REMARK 620 6 ASP B 184 OD2 93.8 84.9 169.2 90.8 83.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 184 OD1 REMARK 620 2 ASP B 184 OD2 60.0 REMARK 620 3 HOH B 506 O 92.0 151.1 REMARK 620 4 ANP B 400 O2B 79.5 91.9 89.7 REMARK 620 5 ANP B 400 O1G 154.8 101.1 107.8 85.0 REMARK 620 6 HOH B 435 O 94.5 84.1 91.6 173.9 100.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN I OF PROTEIN KINASE REMARK 800 INHIBITOR REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN J OF PROTEIN KINASE REMARK 800 INHIBITOR DBREF 1CDK A 1 350 UNP P00517 KAPA_BOVIN 1 350 DBREF 1CDK I 1 20 UNP P61925 IPKA_HUMAN 6 25 DBREF 1CDK B 1 350 UNP P00517 KAPA_BOVIN 1 350 DBREF 1CDK J 1 20 UNP P61925 IPKA_HUMAN 6 25 SEQADV 1CDK LYS A 63 UNP P00517 MET 63 CONFLICT SEQADV 1CDK PHE A 69 UNP P00517 TYR 69 CONFLICT SEQADV 1CDK TYR A 108 UNP P00517 PHE 108 CONFLICT SEQADV 1CDK ASP A 286 UNP P00517 ASN 286 CONFLICT SEQADV 1CDK LYS B 63 UNP P00517 MET 63 CONFLICT SEQADV 1CDK PHE B 69 UNP P00517 TYR 69 CONFLICT SEQADV 1CDK TYR B 108 UNP P00517 PHE 108 CONFLICT SEQADV 1CDK ASP B 286 UNP P00517 ASN 286 CONFLICT SEQRES 1 A 350 GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN GLU SEQRES 2 A 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 A 350 LEU LYS LYS TRP GLU ASN PRO ALA GLN ASN THR ALA HIS SEQRES 4 A 350 LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 A 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU THR SEQRES 6 A 350 GLY ASN HIS PHE ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 A 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 A 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 A 350 LYS LEU GLU TYR SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 A 350 MET VAL MET GLU TYR VAL PRO GLY GLY GLU MET PHE SER SEQRES 11 A 350 HIS LEU ARG ARG ILE GLY ARG PHE SER GLU PRO HIS ALA SEQRES 12 A 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 A 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 A 350 GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN VAL SEQRES 15 A 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 A 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 A 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 A 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 A 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 A 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 A 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 A 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASP SEQRES 23 A 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 A 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 A 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 A 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SER SEQRES 27 A 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 I 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 I 20 ARG ARG ASN ALA ILE HIS ASP SEQRES 1 B 350 GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN GLU SEQRES 2 B 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 B 350 LEU LYS LYS TRP GLU ASN PRO ALA GLN ASN THR ALA HIS SEQRES 4 B 350 LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 B 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU THR SEQRES 6 B 350 GLY ASN HIS PHE ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 B 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 B 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 B 350 LYS LEU GLU TYR SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 B 350 MET VAL MET GLU TYR VAL PRO GLY GLY GLU MET PHE SER SEQRES 11 B 350 HIS LEU ARG ARG ILE GLY ARG PHE SER GLU PRO HIS ALA SEQRES 12 B 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 B 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 B 350 GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN VAL SEQRES 15 B 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 B 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 B 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 B 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 B 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 B 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 B 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 B 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASP SEQRES 23 B 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 B 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 B 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 B 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SER SEQRES 27 B 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 J 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 J 20 ARG ARG ASN ALA ILE HIS ASP MODRES 1CDK TPO A 197 THR PHOSPHOTHREONINE MODRES 1CDK TPO B 197 THR PHOSPHOTHREONINE HET TPO A 197 11 HET TPO B 197 11 HET MN A 401 1 HET MN A 402 1 HET ANP A 400 31 HET MYR A 403 6 HET MN B 401 1 HET MN B 402 1 HET ANP B 400 31 HET MYR B 403 6 HETNAM TPO PHOSPHOTHREONINE HETNAM MN MANGANESE (II) ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MYR MYRISTIC ACID HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 5 MN 4(MN 2+) FORMUL 7 ANP 2(C10 H17 N6 O12 P3) FORMUL 8 MYR 2(C14 H28 O2) FORMUL 13 HOH *312(H2 O) HELIX 1 HAA SER A 10 GLU A 31 1 22 HELIX 2 ZAA LEU A 40 GLN A 42 5 3 HELIX 3 HBA LYS A 76 LYS A 81 1 6 HELIX 4 HCA ILE A 85 ALA A 97 1 13 HELIX 5 HDA MET A 128 ILE A 135 1 8 HELIX 6 HEA GLU A 140 SER A 159 1 20 HELIX 7 HOA PRO A 207 LEU A 211 1 5 HELIX 8 HFA ALA A 218 ALA A 233 1 16 HELIX 9 HGA PRO A 243 SER A 252 1 10 HELIX 10 HHA SER A 263 LEU A 272 1 10 HELIX 11 HIA ASN A 289 LYS A 292 1 4 HELIX 12 ZIA LYS A 295 PHE A 297 5 3 HELIX 13 HJA TRP A 302 TYR A 306 1 5 HELIX 14 HKA GLY A 344 PHE A 347 1 4 HELIX 15 HAI THR I 2 ALA I 8 1 7 HELIX 16 HAB SER B 10 GLU B 31 1 22 HELIX 17 ZAB LEU B 40 GLN B 42 5 3 HELIX 18 HBB LYS B 76 LYS B 81 1 6 HELIX 19 HCB ILE B 85 ALA B 97 1 13 HELIX 20 HDB MET B 128 ILE B 135 1 8 HELIX 21 HEB GLU B 140 SER B 159 1 20 HELIX 22 HOB PRO B 207 LEU B 211 1 5 HELIX 23 HFB ALA B 218 ALA B 233 1 16 HELIX 24 HGB PRO B 243 SER B 252 1 10 HELIX 25 HHB SER B 263 LEU B 272 1 10 HELIX 26 HIB ASN B 289 LYS B 292 1 4 HELIX 27 ZIB LYS B 295 PHE B 297 5 3 HELIX 28 HJB TRP B 302 TYR B 306 1 5 HELIX 29 HKB GLY B 344 PHE B 347 1 4 HELIX 30 HAJ THR J 2 ALA J 8 1 7 SHEET 1 S1A 5 PHE A 43 GLY A 52 0 SHEET 2 S1A 5 GLY A 55 HIS A 62 -1 O GLY A 55 N GLY A 52 SHEET 3 S1A 5 ASN A 67 ASP A 75 -1 O PHE A 69 N VAL A 60 SHEET 4 S1A 5 ASN A 115 MET A 120 -1 O MET A 118 N LYS A 72 SHEET 5 S1A 5 LEU A 106 LYS A 111 -1 O TYR A 108 N VAL A 119 SHEET 1 S2A 2 LEU A 172 ILE A 174 0 SHEET 2 S2A 2 ILE A 180 VAL A 182 -1 N GLN A 181 O LEU A 173 SHEET 1 S1B 5 PHE B 43 GLY B 52 0 SHEET 2 S1B 5 GLY B 55 HIS B 62 -1 O GLY B 55 N GLY B 52 SHEET 3 S1B 5 ASN B 67 ASP B 75 -1 O PHE B 69 N VAL B 60 SHEET 4 S1B 5 ASN B 115 MET B 120 -1 O MET B 118 N LYS B 72 SHEET 5 S1B 5 LEU B 106 LYS B 111 -1 O TYR B 108 N VAL B 119 SHEET 1 S2B 2 LEU B 172 ILE B 174 0 SHEET 2 S2B 2 ILE B 180 VAL B 182 -1 N GLN B 181 O LEU B 173 LINK OD1 ASN A 171 MN MN A 401 1555 1555 2.06 LINK OD1 ASP A 184 MN MN A 402 1555 1555 2.11 LINK OD2 ASP A 184 MN MN A 402 1555 1555 1.99 LINK OD1 ASN B 171 MN MN B 401 1555 1555 2.11 LINK OD1 ASP B 184 MN MN B 402 1555 1555 2.08 LINK OD2 ASP B 184 MN MN B 402 1555 1555 1.97 LINK MN MN A 401 O2G ANP A 400 1555 1555 2.03 LINK MN MN A 401 O HOH A 451 1555 1555 2.19 LINK MN MN A 401 O2A ANP A 400 1555 1555 2.02 LINK MN MN A 402 O HOH A 514 1555 1555 2.27 LINK MN MN A 402 O HOH A 436 1555 1555 2.19 LINK MN MN A 402 O1G ANP A 400 1555 1555 1.90 LINK MN MN A 402 O2B ANP A 400 1555 1555 2.11 LINK MN MN B 401 O2G ANP B 400 1555 1555 2.00 LINK MN MN B 401 O HOH B 449 1555 1555 2.30 LINK MN MN B 401 O2A ANP B 400 1555 1555 2.02 LINK MN MN B 402 O HOH B 506 1555 1555 2.30 LINK MN MN B 402 O2B ANP B 400 1555 1555 2.12 LINK MN MN B 402 O1G ANP B 400 1555 1555 1.91 LINK MN MN B 402 O HOH B 435 1555 1555 2.27 LINK C TRP A 196 N TPO A 197 1555 1555 1.34 LINK C TPO A 197 N LEU A 198 1555 1555 1.34 LINK C TRP B 196 N TPO B 197 1555 1555 1.35 LINK C TPO B 197 N LEU B 198 1555 1555 1.32 LINK MN MN B 401 N3B ANP B 400 1555 1555 2.42 LINK OD2 ASP B 184 MN MN B 401 1555 1555 2.53 LINK OD2 ASP A 184 MN MN A 401 1555 1555 2.55 LINK MN MN A 401 N3B ANP A 400 1555 1555 2.64 SITE 1 AC1 4 ASN A 171 ASP A 184 ANP A 400 HOH A 451 SITE 1 AC2 4 ASP A 184 ANP A 400 HOH A 436 HOH A 514 SITE 1 AC3 25 GLY A 52 SER A 53 PHE A 54 GLY A 55 SITE 2 AC3 25 VAL A 57 ALA A 70 LYS A 72 VAL A 104 SITE 3 AC3 25 MET A 120 GLU A 121 VAL A 123 GLU A 127 SITE 4 AC3 25 ASP A 166 LYS A 168 GLU A 170 ASN A 171 SITE 5 AC3 25 LEU A 173 THR A 183 ASP A 184 MN A 401 SITE 6 AC3 25 MN A 402 HOH A 436 HOH A 451 ARG I 14 SITE 7 AC3 25 ALA I 17 SITE 1 AC4 1 PHE A 18 SITE 1 AC5 4 ASN B 171 ASP B 184 ANP B 400 HOH B 449 SITE 1 AC6 4 ASP B 184 ANP B 400 HOH B 435 HOH B 506 SITE 1 AC7 26 THR B 51 GLY B 52 SER B 53 PHE B 54 SITE 2 AC7 26 GLY B 55 VAL B 57 ALA B 70 LYS B 72 SITE 3 AC7 26 VAL B 104 MET B 120 GLU B 121 VAL B 123 SITE 4 AC7 26 GLU B 127 ASP B 166 LYS B 168 GLU B 170 SITE 5 AC7 26 ASN B 171 LEU B 173 THR B 183 ASP B 184 SITE 6 AC7 26 PHE B 327 MN B 401 MN B 402 HOH B 449 SITE 7 AC7 26 ARG J 14 ALA J 17 SITE 1 AC8 2 LEU B 152 GLU B 155 SITE 1 AC9 54 THR A 51 GLY A 52 SER A 53 PHE A 54 SITE 2 AC9 54 LEU A 82 GLU A 86 LEU A 89 ARG A 93 SITE 3 AC9 54 GLU A 127 PHE A 129 ARG A 133 LYS A 168 SITE 4 AC9 54 PRO A 169 GLU A 170 PHE A 187 LYS A 189 SITE 5 AC9 54 ARG A 190 VAL A 191 LYS A 192 LEU A 198 SITE 6 AC9 54 GLY A 200 THR A 201 PRO A 202 GLU A 203 SITE 7 AC9 54 GLU A 230 TYR A 235 PHE A 239 ALA A 240 SITE 8 AC9 54 ASP A 241 TYR A 330 GLU A 349 ANP A 400 SITE 9 AC9 54 HOH A 411 HOH A 440 HOH A 453 HOH A 500 SITE 10 AC9 54 HOH A 507 HOH A 526 HOH A 532 HOH I 49 SITE 11 AC9 54 HOH I 54 HOH I 63 HOH I 73 HOH I 75 SITE 12 AC9 54 HOH I 76 HOH I 77 HOH I 79 HOH I 88 SITE 13 AC9 54 HOH I 110 HOH I 111 HOH I 129 HOH I 146 SITE 14 AC9 54 HOH I 147 HOH I 148 SITE 1 BC1 52 THR B 51 GLY B 52 SER B 53 PHE B 54 SITE 2 BC1 52 GLU B 86 LEU B 89 ARG B 93 GLU B 127 SITE 3 BC1 52 PHE B 129 ARG B 133 LYS B 168 PRO B 169 SITE 4 BC1 52 GLU B 170 ARG B 190 VAL B 191 LYS B 192 SITE 5 BC1 52 GLY B 200 THR B 201 PRO B 202 GLU B 203 SITE 6 BC1 52 GLU B 230 GLY B 234 TYR B 235 PRO B 236 SITE 7 BC1 52 PHE B 239 ALA B 240 ASP B 241 ILE B 246 SITE 8 BC1 52 TYR B 330 GLU B 349 ANP B 400 HOH B 412 SITE 9 BC1 52 HOH B 451 HOH B 456 HOH B 500 HOH B 527 SITE 10 BC1 52 HOH J 196 HOH J 210 HOH J 211 HOH J 218 SITE 11 BC1 52 HOH J 221 HOH J 222 HOH J 223 HOH J 224 SITE 12 BC1 52 HOH J 225 HOH J 254 HOH J 256 HOH J 257 SITE 13 BC1 52 HOH J 258 HOH J 288 HOH J 296 HOH J 312 CRYST1 107.610 80.600 110.100 90.00 88.59 90.00 I 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009293 0.000000 -0.000229 0.00000 SCALE2 0.000000 0.012407 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009085 0.00000 MTRIX1 1 0.999700 0.012500 0.022200 53.21820 1 MTRIX2 1 -0.012100 0.999800 -0.016800 28.02060 1 MTRIX3 1 -0.022200 0.016500 0.999600 0.61260 1