PDB Short entry for 1CEZ HEADER TRANSFERASE/DNA 11-MAR-99 1CEZ TITLE CRYSTAL STRUCTURE OF A T7 RNA POLYMERASE-T7 PROMOTER COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(P*TP*AP*TP*AP*GP*TP*GP*AP*GP*TP*CP*GP*TP*AP*TP*TP*A)-3'); COMPND 4 CHAIN: T; COMPND 5 SYNONYM: PROMOTER TEMPLATE STRAND; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*TP*AP*AP*TP*AP*CP*GP*AP*CP*TP*CP*AP*CP*TP*A)- COMPND 9 3'); COMPND 10 CHAIN: N; COMPND 11 SYNONYM: PROMOTER NON-TEMPLATE STRAND; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PROTEIN (BACTERIOPHAGE T7 RNA POLYMERASE); COMPND 15 CHAIN: A; COMPND 16 EC: 2.7.7.6; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T7; SOURCE 7 ORGANISM_TAXID: 10760; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS T7 RNA POLYMERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.M.T.CHEETHAM,D.JERUZALMI,T.A.STEITZ REVDAT 4 27-DEC-23 1CEZ 1 REMARK REVDAT 3 24-FEB-09 1CEZ 1 VERSN REVDAT 2 01-APR-03 1CEZ 1 JRNL REVDAT 1 21-MAY-99 1CEZ 0 JRNL AUTH G.M.CHEETHAM,D.JERUZALMI,T.A.STEITZ JRNL TITL STRUCTURAL BASIS FOR INITIATION OF TRANSCRIPTION FROM AN RNA JRNL TITL 2 POLYMERASE-PROMOTER COMPLEX. JRNL REF NATURE V. 399 80 1999 JRNL REFN ISSN 0028-0836 JRNL PMID 10331394 JRNL DOI 10.1038/19999 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.5 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 81.3 REMARK 3 NUMBER OF REFLECTIONS : 42312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4243 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1984 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 187 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6639 REMARK 3 NUCLEIC ACID ATOMS : 656 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.91000 REMARK 3 B22 (A**2) : 1.20000 REMARK 3 B33 (A**2) : -8.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.010 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.910 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.110 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.100 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.390 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 60.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-99. REMARK 100 THE DEPOSITION ID IS D_1000000627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50077 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 110.05000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 110.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, N, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 ILE A 4 REMARK 465 ASN A 5 REMARK 465 GLU A 56 REMARK 465 ARG A 57 REMARK 465 GLN A 58 REMARK 465 LEU A 59 REMARK 465 LYS A 60 REMARK 465 ALA A 61 REMARK 465 GLY A 62 REMARK 465 GLU A 63 REMARK 465 VAL A 64 REMARK 465 ALA A 65 REMARK 465 ASP A 66 REMARK 465 ASN A 67 REMARK 465 ALA A 68 REMARK 465 ALA A 69 REMARK 465 ALA A 70 REMARK 465 LYS A 71 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 6 CG1 CG2 CD1 REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 ASN A 9 CG OD1 ND2 REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 GLU A 356 CG CD OE1 OE2 REMARK 470 GLU A 358 CG CD OE1 OE2 REMARK 470 GLU A 359 CG CD OE1 OE2 REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 GLU A 365 CG CD OE1 OE2 REMARK 470 ASP A 366 CG OD1 OD2 REMARK 470 ILE A 367 CG1 CG2 CD1 REMARK 470 ASP A 368 CG OD1 OD2 REMARK 470 MET A 369 CG SD CE REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 VAL A 594 CG1 CG2 REMARK 470 VAL A 595 CG1 CG2 REMARK 470 THR A 596 OG1 CG2 REMARK 470 VAL A 597 CG1 CG2 REMARK 470 THR A 598 OG1 CG2 REMARK 470 ASP A 599 CG OD1 OD2 REMARK 470 GLU A 600 CB CG CD OE1 OE2 REMARK 470 ASN A 601 CG OD1 ND2 REMARK 470 THR A 602 OG1 CG2 REMARK 470 GLU A 604 CG CD OE1 OE2 REMARK 470 ILE A 605 CG1 CG2 CD1 REMARK 470 SER A 606 OG REMARK 470 GLU A 607 CG CD OE1 OE2 REMARK 470 LYS A 608 CG CD CE NZ REMARK 470 LYS A 610 CG CD CE NZ REMARK 470 THR A 636 OG1 CG2 REMARK 470 LEU A 637 CG CD1 CD2 REMARK 470 TYR A 639 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 641 OG REMARK 470 LYS A 642 CG CD CE NZ REMARK 470 GLU A 643 CG CD OE1 OE2 REMARK 470 PHE A 644 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 646 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 851 CG OD1 OD2 REMARK 470 GLN A 852 CG CD OE1 NE2 REMARK 470 LEU A 853 CG CD1 CD2 REMARK 470 HIS A 854 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 855 CG CD OE1 OE2 REMARK 470 SER A 856 OG REMARK 470 GLN A 857 CG CD OE1 NE2 REMARK 470 LEU A 858 CG CD1 CD2 REMARK 470 ASP A 859 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 147 O ARG A 150 2.05 REMARK 500 O LEU A 24 O HIS A 27 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT N 114 C4 DT N 114 C5 0.058 REMARK 500 GLU A 805 CD GLU A 805 OE2 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC N 106 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 -59.31 88.20 REMARK 500 ASP A 10 -26.95 -39.14 REMARK 500 TYR A 28 -29.65 73.22 REMARK 500 ASP A 130 -81.62 -100.99 REMARK 500 PHE A 151 -25.88 69.54 REMARK 500 GLU A 168 -159.59 33.78 REMARK 500 GLN A 169 91.12 35.11 REMARK 500 HIS A 176 -70.91 -45.09 REMARK 500 VAL A 177 95.62 55.17 REMARK 500 TYR A 178 67.96 -48.82 REMARK 500 LYS A 180 79.23 -54.17 REMARK 500 ALA A 181 141.52 179.21 REMARK 500 GLU A 199 86.37 79.43 REMARK 500 ALA A 262 -68.76 -22.16 REMARK 500 TYR A 312 100.33 76.03 REMARK 500 MET A 313 74.01 -154.22 REMARK 500 PRO A 361 109.59 -59.13 REMARK 500 MET A 362 130.08 -39.61 REMARK 500 PRO A 364 7.19 -62.87 REMARK 500 GLU A 365 -16.81 62.49 REMARK 500 PRO A 371 -171.19 -67.74 REMARK 500 GLU A 372 22.54 -68.07 REMARK 500 ALA A 447 -79.31 -72.36 REMARK 500 LEU A 526 -6.89 -57.69 REMARK 500 SER A 539 -103.07 -53.42 REMARK 500 VAL A 559 -159.11 -84.20 REMARK 500 ASN A 588 -136.31 -108.23 REMARK 500 THR A 590 152.59 -43.76 REMARK 500 ASN A 592 95.78 -63.62 REMARK 500 VAL A 594 -172.87 -51.51 REMARK 500 VAL A 595 159.25 -45.64 REMARK 500 VAL A 597 89.24 -22.12 REMARK 500 THR A 598 21.73 -171.99 REMARK 500 ASP A 599 28.87 -152.31 REMARK 500 GLU A 600 -115.39 -171.64 REMARK 500 ASN A 601 124.13 177.01 REMARK 500 THR A 602 -171.53 77.58 REMARK 500 GLU A 604 69.53 -43.83 REMARK 500 SER A 606 -178.50 -50.94 REMARK 500 LYS A 608 63.43 -63.93 REMARK 500 VAL A 609 133.89 162.13 REMARK 500 LEU A 611 104.19 39.90 REMARK 500 VAL A 625 80.82 69.74 REMARK 500 ALA A 638 -99.73 61.05 REMARK 500 PHE A 644 100.34 44.29 REMARK 500 GLN A 648 4.36 -63.47 REMARK 500 THR A 654 -62.96 -122.90 REMARK 500 LYS A 663 -163.53 -69.56 REMARK 500 GLN A 669 75.19 -119.02 REMARK 500 LYS A 711 -144.10 -102.39 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG T 5 0.06 SIDE CHAIN REMARK 500 DT T 6 0.06 SIDE CHAIN REMARK 500 DC N 106 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1CEZ A 1 883 UNP P00573 RPOL_BPT7 1 883 DBREF 1CEZ T 1 17 PDB 1CEZ 1CEZ 1 17 DBREF 1CEZ N 101 115 PDB 1CEZ 1CEZ 101 115 SEQRES 1 T 17 DT DA DT DA DG DT DG DA DG DT DC DG DT SEQRES 2 T 17 DA DT DT DA SEQRES 1 N 15 DT DA DA DT DA DC DG DA DC DT DC DA DC SEQRES 2 N 15 DT DA SEQRES 1 A 883 MET ASN THR ILE ASN ILE ALA LYS ASN ASP PHE SER ASP SEQRES 2 A 883 ILE GLU LEU ALA ALA ILE PRO PHE ASN THR LEU ALA ASP SEQRES 3 A 883 HIS TYR GLY GLU ARG LEU ALA ARG GLU GLN LEU ALA LEU SEQRES 4 A 883 GLU HIS GLU SER TYR GLU MET GLY GLU ALA ARG PHE ARG SEQRES 5 A 883 LYS MET PHE GLU ARG GLN LEU LYS ALA GLY GLU VAL ALA SEQRES 6 A 883 ASP ASN ALA ALA ALA LYS PRO LEU ILE THR THR LEU LEU SEQRES 7 A 883 PRO LYS MET ILE ALA ARG ILE ASN ASP TRP PHE GLU GLU SEQRES 8 A 883 VAL LYS ALA LYS ARG GLY LYS ARG PRO THR ALA PHE GLN SEQRES 9 A 883 PHE LEU GLN GLU ILE LYS PRO GLU ALA VAL ALA TYR ILE SEQRES 10 A 883 THR ILE LYS THR THR LEU ALA CYS LEU THR SER ALA ASP SEQRES 11 A 883 ASN THR THR VAL GLN ALA VAL ALA SER ALA ILE GLY ARG SEQRES 12 A 883 ALA ILE GLU ASP GLU ALA ARG PHE GLY ARG ILE ARG ASP SEQRES 13 A 883 LEU GLU ALA LYS HIS PHE LYS LYS ASN VAL GLU GLU GLN SEQRES 14 A 883 LEU ASN LYS ARG VAL GLY HIS VAL TYR LYS LYS ALA PHE SEQRES 15 A 883 MET GLN VAL VAL GLU ALA ASP MET LEU SER LYS GLY LEU SEQRES 16 A 883 LEU GLY GLY GLU ALA TRP SER SER TRP HIS LYS GLU ASP SEQRES 17 A 883 SER ILE HIS VAL GLY VAL ARG CYS ILE GLU MET LEU ILE SEQRES 18 A 883 GLU SER THR GLY MET VAL SER LEU HIS ARG GLN ASN ALA SEQRES 19 A 883 GLY VAL VAL GLY GLN ASP SER GLU THR ILE GLU LEU ALA SEQRES 20 A 883 PRO GLU TYR ALA GLU ALA ILE ALA THR ARG ALA GLY ALA SEQRES 21 A 883 LEU ALA GLY ILE SER PRO MET PHE GLN PRO CYS VAL VAL SEQRES 22 A 883 PRO PRO LYS PRO TRP THR GLY ILE THR GLY GLY GLY TYR SEQRES 23 A 883 TRP ALA ASN GLY ARG ARG PRO LEU ALA LEU VAL ARG THR SEQRES 24 A 883 HIS SER LYS LYS ALA LEU MET ARG TYR GLU ASP VAL TYR SEQRES 25 A 883 MET PRO GLU VAL TYR LYS ALA ILE ASN ILE ALA GLN ASN SEQRES 26 A 883 THR ALA TRP LYS ILE ASN LYS LYS VAL LEU ALA VAL ALA SEQRES 27 A 883 ASN VAL ILE THR LYS TRP LYS HIS CYS PRO VAL GLU ASP SEQRES 28 A 883 ILE PRO ALA ILE GLU ARG GLU GLU LEU PRO MET LYS PRO SEQRES 29 A 883 GLU ASP ILE ASP MET ASN PRO GLU ALA LEU THR ALA TRP SEQRES 30 A 883 LYS ARG ALA ALA ALA ALA VAL TYR ARG LYS ASP LYS ALA SEQRES 31 A 883 ARG LYS SER ARG ARG ILE SER LEU GLU PHE MET LEU GLU SEQRES 32 A 883 GLN ALA ASN LYS PHE ALA ASN HIS LYS ALA ILE TRP PHE SEQRES 33 A 883 PRO TYR ASN MET ASP TRP ARG GLY ARG VAL TYR ALA VAL SEQRES 34 A 883 SER MET PHE ASN PRO GLN GLY ASN ASP MET THR LYS GLY SEQRES 35 A 883 LEU LEU THR LEU ALA LYS GLY LYS PRO ILE GLY LYS GLU SEQRES 36 A 883 GLY TYR TYR TRP LEU LYS ILE HIS GLY ALA ASN CYS ALA SEQRES 37 A 883 GLY VAL ASP LYS VAL PRO PHE PRO GLU ARG ILE LYS PHE SEQRES 38 A 883 ILE GLU GLU ASN HIS GLU ASN ILE MET ALA CYS ALA LYS SEQRES 39 A 883 SER PRO LEU GLU ASN THR TRP TRP ALA GLU GLN ASP SER SEQRES 40 A 883 PRO PHE CYS PHE LEU ALA PHE CYS PHE GLU TYR ALA GLY SEQRES 41 A 883 VAL GLN HIS HIS GLY LEU SER TYR ASN CYS SER LEU PRO SEQRES 42 A 883 LEU ALA PHE ASP GLY SER CYS SER GLY ILE GLN HIS PHE SEQRES 43 A 883 SER ALA MET LEU ARG ASP GLU VAL GLY GLY ARG ALA VAL SEQRES 44 A 883 ASN LEU LEU PRO SER GLU THR VAL GLN ASP ILE TYR GLY SEQRES 45 A 883 ILE VAL ALA LYS LYS VAL ASN GLU ILE LEU GLN ALA ASP SEQRES 46 A 883 ALA ILE ASN GLY THR ASP ASN GLU VAL VAL THR VAL THR SEQRES 47 A 883 ASP GLU ASN THR GLY GLU ILE SER GLU LYS VAL LYS LEU SEQRES 48 A 883 GLY THR LYS ALA LEU ALA GLY GLN TRP LEU ALA TYR GLY SEQRES 49 A 883 VAL THR ARG SER VAL THR LYS ARG SER VAL MET THR LEU SEQRES 50 A 883 ALA TYR GLY SER LYS GLU PHE GLY PHE ARG GLN GLN VAL SEQRES 51 A 883 LEU GLU ASP THR ILE GLN PRO ALA ILE ASP SER GLY LYS SEQRES 52 A 883 GLY LEU MET PHE THR GLN PRO ASN GLN ALA ALA GLY TYR SEQRES 53 A 883 MET ALA LYS LEU ILE TRP GLU SER VAL SER VAL THR VAL SEQRES 54 A 883 VAL ALA ALA VAL GLU ALA MET ASN TRP LEU LYS SER ALA SEQRES 55 A 883 ALA LYS LEU LEU ALA ALA GLU VAL LYS ASP LYS LYS THR SEQRES 56 A 883 GLY GLU ILE LEU ARG LYS ARG CYS ALA VAL HIS TRP VAL SEQRES 57 A 883 THR PRO ASP GLY PHE PRO VAL TRP GLN GLU TYR LYS LYS SEQRES 58 A 883 PRO ILE GLN THR ARG LEU ASN LEU MET PHE LEU GLY GLN SEQRES 59 A 883 PHE ARG LEU GLN PRO THR ILE ASN THR ASN LYS ASP SER SEQRES 60 A 883 GLU ILE ASP ALA HIS LYS GLN GLU SER GLY ILE ALA PRO SEQRES 61 A 883 ASN PHE VAL HIS SER GLN ASP GLY SER HIS LEU ARG LYS SEQRES 62 A 883 THR VAL VAL TRP ALA HIS GLU LYS TYR GLY ILE GLU SER SEQRES 63 A 883 PHE ALA LEU ILE HIS ASP SER PHE GLY THR ILE PRO ALA SEQRES 64 A 883 ASP ALA ALA ASN LEU PHE LYS ALA VAL ARG GLU THR MET SEQRES 65 A 883 VAL ASP THR TYR GLU SER CYS ASP VAL LEU ALA ASP PHE SEQRES 66 A 883 TYR ASP GLN PHE ALA ASP GLN LEU HIS GLU SER GLN LEU SEQRES 67 A 883 ASP LYS MET PRO ALA LEU PRO ALA LYS GLY ASN LEU ASN SEQRES 68 A 883 LEU ARG ASP ILE LEU GLU SER ASP PHE ALA PHE ALA FORMUL 4 HOH *471(H2 O) HELIX 1 1 ALA A 7 ASP A 10 1 4 HELIX 2 2 ASP A 13 ASP A 26 1 14 HELIX 3 3 GLY A 29 SER A 43 1 15 HELIX 4 4 GLU A 48 MET A 54 1 7 HELIX 5 5 LEU A 73 LYS A 93 5 21 HELIX 6 6 THR A 101 GLU A 108 1 8 HELIX 7 7 PRO A 111 THR A 127 1 17 HELIX 8 8 VAL A 134 ALA A 149 1 16 HELIX 9 9 GLY A 152 LYS A 163 1 12 HELIX 10 10 LEU A 170 ARG A 173 1 4 HELIX 11 11 ALA A 188 MET A 190 5 3 HELIX 12 12 LYS A 193 LEU A 195 5 3 HELIX 13 13 LYS A 206 SER A 223 1 18 HELIX 14 14 PRO A 248 THR A 256 1 9 HELIX 15 15 LYS A 302 TYR A 308 1 7 HELIX 16 16 PRO A 314 GLN A 324 1 11 HELIX 17 17 LYS A 332 LYS A 343 1 12 HELIX 18 18 ALA A 373 LYS A 407 1 35 HELIX 19 19 ASP A 438 LEU A 443 1 6 HELIX 20 20 GLY A 453 CYS A 467 1 15 HELIX 21 21 PHE A 475 LYS A 494 1 20 HELIX 22 22 TRP A 502 GLU A 504 5 3 HELIX 23 23 PRO A 508 SER A 527 1 20 HELIX 24 24 ILE A 543 LEU A 550 1 8 HELIX 25 25 GLU A 553 ALA A 558 1 6 HELIX 26 26 ILE A 570 ILE A 587 1 18 HELIX 27 27 THR A 613 TYR A 623 1 11 HELIX 28 28 ARG A 627 MET A 635 1 9 HELIX 29 29 VAL A 650 ASP A 653 1 4 HELIX 30 30 ILE A 655 SER A 661 1 7 HELIX 31 31 PRO A 670 THR A 688 1 19 HELIX 32 32 VAL A 690 LEU A 706 1 17 HELIX 33 33 ALA A 771 GLU A 800 1 30 HELIX 34 34 PRO A 818 SER A 838 1 21 HELIX 35 35 VAL A 841 GLN A 848 1 8 HELIX 36 36 LEU A 872 ILE A 875 5 4 SHEET 1 A 2 VAL A 227 GLN A 232 0 SHEET 2 A 2 SER A 241 LEU A 246 -1 N GLU A 245 O SER A 228 SHEET 1 B 2 TRP A 328 ILE A 330 0 SHEET 2 B 2 LEU A 444 LEU A 446 -1 N THR A 445 O LYS A 329 SHEET 1 C 2 TYR A 418 MET A 420 0 SHEET 2 C 2 VAL A 426 ALA A 428 -1 N TYR A 427 O ASN A 419 SHEET 1 D 2 LEU A 534 ASP A 537 0 SHEET 2 D 2 SER A 813 THR A 816 -1 N THR A 816 O LEU A 534 SHEET 1 E 2 VAL A 725 VAL A 728 0 SHEET 2 E 2 PRO A 734 GLN A 737 -1 N GLN A 737 O VAL A 725 SHEET 1 F 2 GLN A 744 ARG A 746 0 SHEET 2 F 2 THR A 760 ASN A 762 -1 N ILE A 761 O THR A 745 SHEET 1 G 2 LEU A 749 PHE A 751 0 SHEET 2 G 2 PHE A 755 LEU A 757 -1 N LEU A 757 O LEU A 749 SHEET 1 H 2 LYS A 740 PRO A 742 0 SHEET 2 H 2 ASP A 766 ILE A 769 -1 N GLU A 768 O LYS A 741 CRYST1 220.100 73.300 80.900 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004543 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013642 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012361 0.00000