PDB Short entry for 1CFC HEADER CALCIUM-BINDING PROTEIN 02-AUG-95 1CFC TITLE CALCIUM-FREE CALMODULIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355 KEYWDS CALCIUM-BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR H.KUBONIWA,N.TJANDRA,S.GRZESIEK,H.REN,C.B.KLEE,A.BAX REVDAT 3 16-FEB-22 1CFC 1 REMARK REVDAT 2 24-FEB-09 1CFC 1 VERSN REVDAT 1 07-DEC-95 1CFC 0 JRNL AUTH H.KUBONIWA,N.TJANDRA,S.GRZESIEK,H.REN,C.B.KLEE,A.BAX JRNL TITL SOLUTION STRUCTURE OF CALCIUM-FREE CALMODULIN. JRNL REF NAT.STRUCT.BIOL. V. 2 768 1995 JRNL REFN ISSN 1072-8368 JRNL PMID 7552748 JRNL DOI 10.1038/NSB0995-768 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CFC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172289. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 13 TYR A 138 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 56 33.36 -79.83 REMARK 500 1 MET A 76 35.58 -92.27 REMARK 500 1 LYS A 77 -104.52 -94.09 REMARK 500 1 ASP A 78 -6.60 -52.29 REMARK 500 1 ASP A 80 167.56 -45.04 REMARK 500 1 LYS A 115 42.87 -79.52 REMARK 500 1 ASP A 129 81.17 -39.00 REMARK 500 1 ASP A 131 -155.33 -114.01 REMARK 500 1 ASP A 133 -83.40 -133.07 REMARK 500 1 GLU A 139 -39.07 -39.77 REMARK 500 1 ALA A 147 115.92 -179.66 REMARK 500 2 ASP A 2 16.47 -155.96 REMARK 500 2 ASP A 20 69.68 -100.06 REMARK 500 2 ASP A 56 37.70 -79.72 REMARK 500 2 ASN A 60 -91.95 -131.30 REMARK 500 2 LYS A 77 -23.37 -35.17 REMARK 500 2 THR A 79 37.17 -82.59 REMARK 500 2 ASP A 80 168.39 -46.40 REMARK 500 2 ALA A 102 -34.76 -39.93 REMARK 500 2 LYS A 115 38.18 -80.63 REMARK 500 2 ASP A 129 82.16 -39.12 REMARK 500 2 ASP A 131 -154.78 -113.55 REMARK 500 2 ASP A 133 -83.52 -132.08 REMARK 500 2 THR A 146 -76.34 -84.09 REMARK 500 2 ALA A 147 118.89 179.92 REMARK 500 3 ASP A 56 33.79 -79.65 REMARK 500 3 MET A 76 53.42 -97.84 REMARK 500 3 LYS A 77 -99.98 -123.32 REMARK 500 3 ASP A 78 -8.15 -46.15 REMARK 500 3 ASP A 80 168.24 -45.92 REMARK 500 3 ALA A 102 -32.13 -39.98 REMARK 500 3 LYS A 115 38.04 -79.98 REMARK 500 3 ASP A 129 81.31 -39.02 REMARK 500 3 ASP A 131 -158.51 -112.05 REMARK 500 3 ASP A 133 -82.42 -131.42 REMARK 500 3 ALA A 147 113.16 -174.64 REMARK 500 4 ASP A 56 36.07 -79.74 REMARK 500 4 ASN A 60 -91.95 -132.48 REMARK 500 4 MET A 76 99.64 -56.91 REMARK 500 4 LYS A 77 -92.74 -154.82 REMARK 500 4 ASP A 78 -9.13 -41.51 REMARK 500 4 ASP A 80 168.12 -49.63 REMARK 500 4 ALA A 102 -33.57 -39.90 REMARK 500 4 LYS A 115 38.71 -80.86 REMARK 500 4 ASP A 129 82.02 -39.20 REMARK 500 4 ASP A 131 -158.62 -112.16 REMARK 500 4 ASP A 133 -81.94 -128.30 REMARK 500 4 TYR A 138 -20.80 -39.85 REMARK 500 5 ASP A 2 17.88 -157.05 REMARK 500 5 ASP A 20 68.86 -100.03 REMARK 500 REMARK 500 THIS ENTRY HAS 296 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CFD RELATED DB: PDB DBREF 1CFC A 1 148 UNP P62155 CALM_XENLA 1 148 SEQRES 1 A 148 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 148 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 A 148 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 4 A 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 5 A 148 ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE SEQRES 6 A 148 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP SEQRES 7 A 148 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL SEQRES 8 A 148 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 9 A 148 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR SEQRES 10 A 148 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 11 A 148 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN SEQRES 12 A 148 MET MET THR ALA LYS HELIX 1 1 GLU A 6 PHE A 19 1 14 HELIX 2 2 THR A 29 SER A 38 5 10 HELIX 3 3 GLU A 45 VAL A 55 1 11 HELIX 4 4 PHE A 65 LYS A 75 1 11 HELIX 5 5 GLU A 82 VAL A 91 1 10 HELIX 6 6 ALA A 102 ASN A 111 1 10 HELIX 7 7 ASP A 118 GLU A 127 1 10 HELIX 8 8 GLU A 139 THR A 146 1 8 SHEET 1 A 2 THR A 26 THR A 28 0 SHEET 2 A 2 THR A 62 ASP A 64 -1 N ILE A 63 O ILE A 27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000