PDB Short entry for 1CGP HEADER TRANSCRIPTION/DNA 12-AUG-91 1CGP TITLE CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'- TITLE 2 CYCLIC-MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*GP*CP*GP*AP*AP*AP*AP*GP*TP*GP*TP*GP*AP*CP*AP*TP*AP*T)-3'); COMPND 4 CHAIN: C, E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*GP*TP*CP*AP*CP*AP*CP*TP*TP*TP*TP*CP*G)-3'); COMPND 8 CHAIN: D, F; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN (CAP)); COMPND 12 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.C.SCHULTZ,G.C.SHIELDS,T.A.STEITZ REVDAT 5 07-FEB-24 1CGP 1 REMARK REVDAT 4 15-FEB-17 1CGP 1 AUTHOR VERSN SOURCE REVDAT 3 24-FEB-09 1CGP 1 VERSN REVDAT 2 15-OCT-94 1CGP 1 REVDAT 1 31-JAN-94 1CGP 0 JRNL AUTH S.C.SCHULTZ,G.C.SHIELDS,T.A.STEITZ JRNL TITL CRYSTAL STRUCTURE OF A CAP-DNA COMPLEX: THE DNA IS BENT BY JRNL TITL 2 90 DEGREES. JRNL REF SCIENCE V. 253 1001 1991 JRNL REFN ISSN 0036-8075 JRNL PMID 1653449 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.-C.VANEY,G.L.GILLILAND,J.G.HARMAN,A.PETERKOFSKY,I.T.WEBER REMARK 1 TITL CRYSTAL STRUCTURE OF A CAMP-INDEPENDENT FORM OF CATABOLITE REMARK 1 TITL 2 GENE ACTIVATOR PROTEIN WITH ADENOSINE SUBSTITUTED IN ONE OF REMARK 1 TITL 3 TWO CAMP-BINDING SITES REMARK 1 REF BIOCHEMISTRY V. 28 4568 1989 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3112 REMARK 3 NUCLEIC ACID ATOMS : 1262 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 3.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HIS A 159 - PRO A 160 OMEGA ANGLE = 215.267 PEPTIDE BOND DEVIATES REMARK 3 SIGNIFICANTLY FROM TRANS CONFORMATION. REMARK 4 REMARK 4 1CGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.00, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 69.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.30000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 69.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.30000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 69.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.30000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 69.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.30000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 ASP A 8 REMARK 465 VAL B 1 REMARK 465 LEU B 2 REMARK 465 GLY B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 GLN B 6 REMARK 465 THR B 7 REMARK 465 ASP B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG B 122 HE21 GLN B 125 1.33 REMARK 500 HG SER A 83 O1P CMP A 206 1.55 REMARK 500 O2 DC C 29 H22 DG F 3 1.55 REMARK 500 H22 DG C 25 O2 DC F 7 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H1 DG C 16 O6 DG F 15 3554 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 18 C5' DG C 18 C4' 0.054 REMARK 500 DA C 30 C5' DA C 30 C4' 0.052 REMARK 500 DA C 32 C5' DA C 32 C4' 0.051 REMARK 500 DT D 11 C5 DT D 11 C7 0.047 REMARK 500 DA E 20 C5' DA E 20 C4' 0.059 REMARK 500 DA E 22 C5' DA E 22 C4' 0.043 REMARK 500 DA F 8 C5' DA F 8 C4' 0.045 REMARK 500 HIS A 17 NE2 HIS A 17 CD2 -0.091 REMARK 500 HIS B 17 NE2 HIS B 17 CD2 -0.072 REMARK 500 HIS B 31 NE2 HIS B 31 CD2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 17 O3' - P - O5' ANGL. DEV. = 32.6 DEGREES REMARK 500 DC C 17 O3' - P - OP2 ANGL. DEV. = -34.2 DEGREES REMARK 500 DC C 17 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DG C 18 O3' - P - O5' ANGL. DEV. = 15.8 DEGREES REMARK 500 DG C 18 O3' - P - OP2 ANGL. DEV. = 19.4 DEGREES REMARK 500 DG C 18 O3' - P - OP1 ANGL. DEV. = -43.7 DEGREES REMARK 500 DG C 18 P - O5' - C5' ANGL. DEV. = 10.4 DEGREES REMARK 500 DG C 18 O4' - C1' - C2' ANGL. DEV. = -5.9 DEGREES REMARK 500 DG C 18 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 DA C 19 O3' - P - OP2 ANGL. DEV. = 36.5 DEGREES REMARK 500 DA C 19 O3' - P - OP1 ANGL. DEV. = -36.6 DEGREES REMARK 500 DA C 19 C3' - O3' - P ANGL. DEV. = 8.6 DEGREES REMARK 500 DA C 20 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA C 21 O3' - P - OP2 ANGL. DEV. = 19.5 DEGREES REMARK 500 DA C 21 O3' - P - OP1 ANGL. DEV. = -31.2 DEGREES REMARK 500 DA C 21 C1' - O4' - C4' ANGL. DEV. = -7.7 DEGREES REMARK 500 DA C 21 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA C 22 O3' - P - O5' ANGL. DEV. = -12.7 DEGREES REMARK 500 DA C 22 O3' - P - OP2 ANGL. DEV. = 10.6 DEGREES REMARK 500 DA C 22 C3' - O3' - P ANGL. DEV. = 8.9 DEGREES REMARK 500 DG C 23 O3' - P - O5' ANGL. DEV. = 12.6 DEGREES REMARK 500 DT C 24 O3' - P - OP2 ANGL. DEV. = 17.4 DEGREES REMARK 500 DT C 24 O3' - P - OP1 ANGL. DEV. = -29.2 DEGREES REMARK 500 DT C 24 C4 - C5 - C6 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT C 24 C6 - C5 - C7 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT C 26 O3' - P - O5' ANGL. DEV. = -19.9 DEGREES REMARK 500 DT C 26 O3' - P - OP2 ANGL. DEV. = 13.3 DEGREES REMARK 500 DT C 26 O4' - C4' - C3' ANGL. DEV. = -6.1 DEGREES REMARK 500 DT C 26 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DT C 26 N3 - C2 - O2 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT C 26 C6 - C5 - C7 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG C 27 O3' - P - O5' ANGL. DEV. = -20.1 DEGREES REMARK 500 DG C 27 O3' - P - OP2 ANGL. DEV. = 41.9 DEGREES REMARK 500 DG C 27 O3' - P - OP1 ANGL. DEV. = -30.3 DEGREES REMARK 500 DA C 28 O3' - P - O5' ANGL. DEV. = -27.9 DEGREES REMARK 500 DA C 28 O3' - P - OP2 ANGL. DEV. = 42.4 DEGREES REMARK 500 DA C 28 O3' - P - OP1 ANGL. DEV. = -25.7 DEGREES REMARK 500 DA C 28 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC C 29 O3' - P - OP2 ANGL. DEV. = 7.6 DEGREES REMARK 500 DC C 29 O3' - P - OP1 ANGL. DEV. = -17.8 DEGREES REMARK 500 DC C 29 C4' - C3' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DC C 29 O4' - C1' - N1 ANGL. DEV. = 8.1 DEGREES REMARK 500 DA C 30 O3' - P - OP2 ANGL. DEV. = 36.3 DEGREES REMARK 500 DA C 30 O3' - P - OP1 ANGL. DEV. = -27.2 DEGREES REMARK 500 DA C 30 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA C 30 C3' - O3' - P ANGL. DEV. = 11.3 DEGREES REMARK 500 DT C 31 O3' - P - O5' ANGL. DEV. = 36.8 DEGREES REMARK 500 DT C 31 O3' - P - OP1 ANGL. DEV. = -15.5 DEGREES REMARK 500 DT C 31 C1' - O4' - C4' ANGL. DEV. = -9.7 DEGREES REMARK 500 DT C 31 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 241 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 26 -3.03 81.06 REMARK 500 LEU A 29 -88.45 -94.81 REMARK 500 GLU A 37 -6.23 -147.86 REMARK 500 LEU A 73 -5.38 -58.39 REMARK 500 ALA A 151 13.36 -66.29 REMARK 500 PRO A 154 86.37 -58.97 REMARK 500 ASP A 155 -16.51 171.33 REMARK 500 PRO A 160 -78.29 4.18 REMARK 500 GLN A 193 7.21 -61.73 REMARK 500 HIS A 199 59.33 -173.89 REMARK 500 LYS B 26 -4.52 76.54 REMARK 500 GLU B 54 -1.19 -52.08 REMARK 500 GLU B 55 68.66 174.49 REMARK 500 GLU B 72 -31.69 -33.00 REMARK 500 LEU B 75 -41.87 -14.09 REMARK 500 PRO B 154 62.33 -46.46 REMARK 500 ASP B 155 26.58 -169.62 REMARK 500 HIS B 199 67.53 -178.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 159 PRO A 160 -144.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA C 32 0.05 SIDE CHAIN REMARK 500 DG D 3 0.06 SIDE CHAIN REMARK 500 DG F 3 0.08 SIDE CHAIN REMARK 500 DT F 11 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: S1A REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: S1B REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP B 206 DBREF 1CGP A 1 205 UNP P0ACJ8 CRP_ECOLI 2 206 DBREF 1CGP B 1 205 UNP P0ACJ8 CRP_ECOLI 2 206 DBREF 1CGP C 16 33 PDB 1CGP 1CGP 16 33 DBREF 1CGP D 3 15 PDB 1CGP 1CGP 3 15 DBREF 1CGP E 16 33 PDB 1CGP 1CGP 16 33 DBREF 1CGP F 3 15 PDB 1CGP 1CGP 3 15 SEQRES 1 C 18 DG DC DG DA DA DA DA DG DT DG DT DG DA SEQRES 2 C 18 DC DA DT DA DT SEQRES 1 D 13 DG DT DC DA DC DA DC DT DT DT DT DC DG SEQRES 1 E 18 DG DC DG DA DA DA DA DG DT DG DT DG DA SEQRES 2 E 18 DC DA DT DA DT SEQRES 1 F 13 DG DT DC DA DC DA DC DT DT DT DT DC DG SEQRES 1 A 205 VAL LEU GLY LYS PRO GLN THR ASP PRO THR LEU GLU TRP SEQRES 2 A 205 PHE LEU SER HIS CYS HIS ILE HIS LYS TYR PRO SER LYS SEQRES 3 A 205 SER THR LEU ILE HIS GLN GLY GLU LYS ALA GLU THR LEU SEQRES 4 A 205 TYR TYR ILE VAL LYS GLY SER VAL ALA VAL LEU ILE LYS SEQRES 5 A 205 ASP GLU GLU GLY LYS GLU MET ILE LEU SER TYR LEU ASN SEQRES 6 A 205 GLN GLY ASP PHE ILE GLY GLU LEU GLY LEU PHE GLU GLU SEQRES 7 A 205 GLY GLN GLU ARG SER ALA TRP VAL ARG ALA LYS THR ALA SEQRES 8 A 205 CYS GLU VAL ALA GLU ILE SER TYR LYS LYS PHE ARG GLN SEQRES 9 A 205 LEU ILE GLN VAL ASN PRO ASP ILE LEU MET ARG LEU SER SEQRES 10 A 205 ALA GLN MET ALA ARG ARG LEU GLN VAL THR SER GLU LYS SEQRES 11 A 205 VAL GLY ASN LEU ALA PHE LEU ASP VAL THR GLY ARG ILE SEQRES 12 A 205 ALA GLN THR LEU LEU ASN LEU ALA LYS GLN PRO ASP ALA SEQRES 13 A 205 MET THR HIS PRO ASP GLY MET GLN ILE LYS ILE THR ARG SEQRES 14 A 205 GLN GLU ILE GLY GLN ILE VAL GLY CYS SER ARG GLU THR SEQRES 15 A 205 VAL GLY ARG ILE LEU LYS MET LEU GLU ASP GLN ASN LEU SEQRES 16 A 205 ILE SER ALA HIS GLY LYS THR ILE VAL VAL SEQRES 1 B 205 VAL LEU GLY LYS PRO GLN THR ASP PRO THR LEU GLU TRP SEQRES 2 B 205 PHE LEU SER HIS CYS HIS ILE HIS LYS TYR PRO SER LYS SEQRES 3 B 205 SER THR LEU ILE HIS GLN GLY GLU LYS ALA GLU THR LEU SEQRES 4 B 205 TYR TYR ILE VAL LYS GLY SER VAL ALA VAL LEU ILE LYS SEQRES 5 B 205 ASP GLU GLU GLY LYS GLU MET ILE LEU SER TYR LEU ASN SEQRES 6 B 205 GLN GLY ASP PHE ILE GLY GLU LEU GLY LEU PHE GLU GLU SEQRES 7 B 205 GLY GLN GLU ARG SER ALA TRP VAL ARG ALA LYS THR ALA SEQRES 8 B 205 CYS GLU VAL ALA GLU ILE SER TYR LYS LYS PHE ARG GLN SEQRES 9 B 205 LEU ILE GLN VAL ASN PRO ASP ILE LEU MET ARG LEU SER SEQRES 10 B 205 ALA GLN MET ALA ARG ARG LEU GLN VAL THR SER GLU LYS SEQRES 11 B 205 VAL GLY ASN LEU ALA PHE LEU ASP VAL THR GLY ARG ILE SEQRES 12 B 205 ALA GLN THR LEU LEU ASN LEU ALA LYS GLN PRO ASP ALA SEQRES 13 B 205 MET THR HIS PRO ASP GLY MET GLN ILE LYS ILE THR ARG SEQRES 14 B 205 GLN GLU ILE GLY GLN ILE VAL GLY CYS SER ARG GLU THR SEQRES 15 B 205 VAL GLY ARG ILE LEU LYS MET LEU GLU ASP GLN ASN LEU SEQRES 16 B 205 ILE SER ALA HIS GLY LYS THR ILE VAL VAL HET CMP A 206 25 HET CMP B 206 25 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETSYN CMP CYCLIC AMP; CAMP FORMUL 7 CMP 2(C10 H12 N5 O6 P) HELIX 1 AA PRO A 9 CYS A 18 1 10 HELIX 2 BA TYR A 99 PRO A 110 1 12 HELIX 3 CA ILE A 112 GLY A 132 1 21 HELIX 4 DA THR A 140 ALA A 151 1 12 HELIX 5 EA THR A 168 VAL A 176 1 9 HELIX 6 FA ARG A 180 GLU A 191 1 12 HELIX 7 AB PRO B 9 CYS B 18 1 10 HELIX 8 BB TYR B 99 PRO B 110 1 12 HELIX 9 CB ILE B 112 GLU B 129 1 18 HELIX 10 DB THR B 140 ALA B 151 1 12 HELIX 11 EB THR B 168 VAL B 176 1 9 HELIX 12 FB ARG B 180 GLU B 191 1 12 SHEET 1 AA 4 HIS A 19 TYR A 23 0 SHEET 2 AA 4 THR A 90 SER A 98 -1 SHEET 3 AA 4 GLU A 34 ILE A 42 -1 SHEET 4 AA 4 ASP A 68 ILE A 70 -1 SHEET 1 BA 4 SER A 27 GLN A 32 0 SHEET 2 BA 4 GLU A 77 ALA A 88 -1 SHEET 3 BA 4 ALA A 48 LYS A 52 -1 SHEET 4 BA 4 GLU A 58 LEU A 64 -1 SHEET 1 CA 4 MET A 157 PRO A 160 0 SHEET 2 CA 4 ASP A 161 ILE A 165 -1 SHEET 3 CA 4 LYS A 201 VAL A 205 -1 SHEET 4 CA 4 LEU A 195 HIS A 199 -1 SHEET 1 AB 4 HIS B 19 TYR B 23 0 SHEET 2 AB 4 THR B 90 SER B 98 -1 SHEET 3 AB 4 GLU B 34 ILE B 42 -1 SHEET 4 AB 4 ASP B 68 ILE B 70 -1 SHEET 1 BB 4 SER B 27 GLN B 32 0 SHEET 2 BB 4 GLU B 77 ALA B 88 -1 SHEET 3 BB 4 ALA B 48 LYS B 52 -1 SHEET 4 BB 4 GLU B 58 LEU B 64 -1 SHEET 1 CB 4 MET B 157 PRO B 160 0 SHEET 2 CB 4 ASP B 161 ILE B 165 -1 SHEET 3 CB 4 LYS B 201 VAL B 205 -1 SHEET 4 CB 4 LEU B 195 HIS B 199 -1 SITE 1 S1A 20 ILE A 30 VAL A 49 LEU A 61 SER A 62 SITE 2 S1A 20 TYR A 63 LEU A 64 GLY A 71 GLU A 72 SITE 3 S1A 20 LEU A 73 ARG A 82 SER A 83 ALA A 84 SITE 4 S1A 20 TRP A 85 VAL A 86 ARG A 123 LEU A 124 SITE 5 S1A 20 GLN A 125 VAL A 126 THR A 127 SER B 128 SITE 1 S1B 20 ILE B 30 VAL B 49 LEU B 61 SER B 62 SITE 2 S1B 20 TYR B 63 LEU B 64 GLY B 71 GLU B 72 SITE 3 S1B 20 LEU B 73 ARG B 82 SER B 83 ALA B 84 SITE 4 S1B 20 TRP B 85 VAL B 86 ARG B 123 LEU B 124 SITE 5 S1B 20 GLN B 125 VAL B 126 THR B 127 SER A 128 SITE 1 AC1 12 VAL A 49 SER A 62 GLY A 71 GLU A 72 SITE 2 AC1 12 LEU A 73 ARG A 82 SER A 83 ALA A 84 SITE 3 AC1 12 VAL A 86 THR A 127 LEU B 124 SER B 128 SITE 1 AC2 13 SER A 128 VAL B 49 LEU B 61 SER B 62 SITE 2 AC2 13 ILE B 70 GLY B 71 GLU B 72 LEU B 73 SITE 3 AC2 13 ARG B 82 SER B 83 ALA B 84 ARG B 123 SITE 4 AC2 13 THR B 127 CRYST1 138.000 152.600 76.000 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007246 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013158 0.00000