PDB Short entry for 1CJG HEADER TRANSCRIPTION/DNA 14-APR-99 1CJG TITLE NMR STRUCTURE OF LAC REPRESSOR HP62-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*GP*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*TP*C)- COMPND 4 3'); COMPND 5 CHAIN: C, D; COMPND 6 FRAGMENT: SYMMETRIC LAC OPERATOR; COMPND 7 SYNONYM: SYML OPERATOR; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE OPERATOR IS A PALINDROME OF THE LEFT HALF OF THE COMPND 10 WILD-TYPE OPERATOR AND LACKS THE CENTRAL BASE-PAIR; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: PROTEIN (LAC REPRESSOR); COMPND 13 CHAIN: A, B; COMPND 14 FRAGMENT: HEADPIECE, RESIDUES 1 - 62; COMPND 15 SYNONYM: LAC HP62; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: THE PROTEIN CONTAINS THE 62 N-TERMINAL RESIDUES (I.E., COMPND 18 THE DNA BINDING REGION) OF THE COMPLETE LAC REPRESSOR PROTEIN SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE FRAGMENT IS A VARIANT OF THE WILD-TYPE OPERATOR SOURCE 4 SEQUENCE OF THE LAC OPERON OF ESCHERICHIA COLI; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 GENE: LAC I, THE PART ENCODING THE 62 N-TERMINAL AMINOACIDS; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: DH9; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PGP1-2;PET-HP62 KEYWDS TRANSCRIPTION REGULATION, LAC OPERON, LAC REPRESSOR, HEADPIECE, LAC KEYWDS 2 OPERATOR, TRANSCRIPTION-DNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 11 AUTHOR C.A.E.M.SPRONK,A.M.J.J.BONVIN,P.K.RADHA,G.MELACINI,R.BOELENS, AUTHOR 2 R.KAPTEIN REVDAT 5 27-DEC-23 1CJG 1 REMARK REVDAT 4 27-NOV-19 1CJG 1 JRNL REMARK REVDAT 3 24-FEB-09 1CJG 1 VERSN REVDAT 2 01-APR-03 1CJG 1 JRNL REVDAT 1 01-JAN-00 1CJG 0 JRNL AUTH C.A.SPRONK,A.M.BONVIN,P.K.RADHA,G.MELACINI,R.BOELENS, JRNL AUTH 2 R.KAPTEIN JRNL TITL THE SOLUTION STRUCTURE OF LAC REPRESSOR HEADPIECE 62 JRNL TITL 2 COMPLEXED TO A SYMMETRICAL LAC OPERATOR. JRNL REF STRUCTURE FOLD.DES. V. 7 1483 1999 JRNL REFN ISSN 0969-2126 JRNL PMID 10647179 JRNL DOI 10.1016/S0969-2126(00)88339-2 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.SLIJPER,R.BOELENS,A.L.DAVIS,R.N.KONINGS,G.A.VAN DER MAREL, REMARK 1 AUTH 2 J.H.VAN BOOM,R.KAPTEIN REMARK 1 TITL BACKBONE AND SIDE CHAIN DYNAMICS OF LAC REPRESSOR HEADPIECE REMARK 1 TITL 2 (1-56) AND ITS COMPLEX WITH DNA. REMARK 1 REF BIOCHEMISTRY V. 36 249 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 8993340 REMARK 1 DOI 10.1021/BI961670D REMARK 1 REFERENCE 2 REMARK 1 AUTH C.A.SPRONK,M.SLIJPER,J.H.VAN BOOM,R.KAPTEIN,R.BOELENS REMARK 1 TITL FORMATION OF THE HINGE HELIX IN THE LAC REPRESSOR IS INDUCED REMARK 1 TITL 2 UPON BINDING TO THE LAC OPERATOR. REMARK 1 REF NAT.STRUCT.BIOL. V. 3 916 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 8901866 REMARK 1 DOI 10.1038/NSB1196-916 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.SLIJPER,A.M.BONVIN,R.BOELENS,R.KAPTEIN REMARK 1 TITL REFINED STRUCTURE OF LAC REPRESSOR HEADPIECE (1-56) REMARK 1 TITL 2 DETERMINED BY RELAXATION MATRIX CALCULATIONS FROM 2D AND 3D REMARK 1 TITL 3 NOE DATA: CHANGE OF TERTIARY STRUCTURE UPON BINDING TO THE REMARK 1 TITL 4 LAC OPERATOR. REMARK 1 REF J.MOL.BIOL. V. 259 761 1996 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 8683581 REMARK 1 DOI 10.1006/JMBI.1996.0356 REMARK 1 REFERENCE 4 REMARK 1 AUTH V.P.CHUPRINA,J.A.RULLMANN,R.M.LAMERICHS,J.H.VAN BOOM, REMARK 1 AUTH 2 R.BOELENS,R.KAPTEIN REMARK 1 TITL STRUCTURE OF THE COMPLEX OF LAC REPRESSOR HEADPIECE AND AN REMARK 1 TITL 2 11 BASE-PAIR HALF-OPERATOR DETERMINED BY NUCLEAR MAGNETIC REMARK 1 TITL 3 RESONANCE SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS. REMARK 1 REF J.MOL.BIOL. V. 234 446 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 8230225 REMARK 1 DOI 10.1006/JMBI.1993.1598 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES WERE DETERMINED BY FIRST REMARK 3 CALCULATING THE STRUCTURE OF THE HP62 MONOMER USING THE STANDARD REMARK 3 XPLOR PARAMETER SETS FOR NMR STRUCTURE DETERMINATION. THE HP62 REMARK 3 MONOMERS WERE SUBSEQUENTLY DUPLICATED AND DOCKED ONTO A B-DNA REMARK 3 TEMPLATE STRUCTURE OF THE LAC OPERATOR, WHICH WAS ALLOWED TO REMARK 3 BEND IN ORDER TO ACCOMODATE THE TWO HP62 MONOMERS. THE PROPERLY REMARK 3 DOCKED STRUCTURES WERE PLACED IN A TIP3P WATERBOX WHICH WAS REMARK 3 NEUTRALIZED BY ADDITION OF SODIUM-IONS. THE STRUCTURES WERE THEN REMARK 3 FURTHER REFINED BY A RESTRAINED MD SIMULATION OF 24 PS IN THE REMARK 3 CHARMM22 FORCEFIELD FOR PROTEINS AND NUCLEIC ACIDS. NCS SYMMETRY REMARK 3 RESTRAINTS WERE USED DURING THE DOCKING AND REFINEMENT REMARK 3 PROCEDURES. FOR FURTHER REFINEMENT DETAILS SEE THE PAPER REMARK 3 DESCRIBING THE STRUCTURES REMARK 4 REMARK 4 1CJG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-99. REMARK 100 THE DEPOSITION ID IS D_1000000848. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 315 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : SEE ARTICLE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : SEE ARTICLE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SEE ARTICLE REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING FOLLOWED BY REMARK 210 RESTRAINED MD REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 14 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : SEE ARTICLE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: RESONANCE ASSIGNMENTS WERE BASED ON VARIOUS HOMONUCLEAR REMARK 210 AND DOUBLE AND TRIPLE RESONANCE NMR EXPERIMENTS IN H2O/D2O (95%/ REMARK 210 5%) AND D2O. IN ADDITION ISOTOPE FILTER EXPERIMENTS WERE APPLIED REMARK 210 TO OBTAIN ADDITIONAL ASSIGNMENTS AND TO ASSIGN INTER-MOLECULAR REMARK 210 NOES. FOR FURTHER DETAILS SEE THE REFERENCE DESCRIBING THE REMARK 210 STRUCTURES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 7 DG C 1 C5 DG C 1 C6 -0.060 REMARK 500 8 DG C 12 C5 DG C 12 C6 -0.060 REMARK 500 10 DG D 6 C5 DG D 6 C6 -0.060 REMARK 500 11 DG D 1 C5 DG D 1 C6 -0.060 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DG C 1 N3 - C2 - N2 ANGL. DEV. = 5.7 DEGREES REMARK 500 1 DG C 6 N3 - C2 - N2 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DG C 8 N3 - C2 - N2 ANGL. DEV. = 6.6 DEGREES REMARK 500 1 DA C 9 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 1 DA C 9 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DG C 10 N3 - C2 - N2 ANGL. DEV. = 5.0 DEGREES REMARK 500 1 DG C 12 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DG C 12 N1 - C2 - N2 ANGL. DEV. = -5.7 DEGREES REMARK 500 1 DG C 12 N3 - C2 - N2 ANGL. DEV. = 8.5 DEGREES REMARK 500 1 DC C 13 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 1 DC C 13 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 DT C 20 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DG D 1 N3 - C2 - N2 ANGL. DEV. = 4.9 DEGREES REMARK 500 1 DG D 6 N3 - C2 - N2 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DG D 8 N1 - C2 - N3 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 DG D 8 N3 - C2 - N2 ANGL. DEV. = 7.7 DEGREES REMARK 500 1 DA D 9 O4' - C1' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 1 DA D 9 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DG D 10 N3 - C2 - N2 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 DG D 12 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 1 DG D 12 N3 - C2 - N2 ANGL. DEV. = 5.1 DEGREES REMARK 500 1 DC D 13 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 DC D 13 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 1 DT D 20 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 1 ARG A 22 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 TYR A 47 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 1 TYR A 47 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 MET B 42 CG - SD - CE ANGL. DEV. = -11.9 DEGREES REMARK 500 1 TYR B 47 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 1 TYR B 47 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 DG C 1 N3 - C2 - N2 ANGL. DEV. = 5.1 DEGREES REMARK 500 2 DT C 4 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 2 DG C 6 N3 - C2 - N2 ANGL. DEV. = 5.6 DEGREES REMARK 500 2 DG C 8 N3 - C2 - N2 ANGL. DEV. = 7.5 DEGREES REMARK 500 2 DG C 10 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 2 DG C 10 N3 - C2 - N2 ANGL. DEV. = 5.7 DEGREES REMARK 500 2 DG C 12 N1 - C2 - N3 ANGL. DEV. = -3.6 DEGREES REMARK 500 2 DG C 12 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 2 DG C 12 N1 - C2 - N2 ANGL. DEV. = -6.0 DEGREES REMARK 500 2 DG C 12 N3 - C2 - N2 ANGL. DEV. = 9.6 DEGREES REMARK 500 2 DC C 13 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 2 DG D 1 N3 - C2 - N2 ANGL. DEV. = 6.9 DEGREES REMARK 500 2 DG D 6 N3 - C2 - N2 ANGL. DEV. = 6.4 DEGREES REMARK 500 2 DG D 8 N1 - C2 - N3 ANGL. DEV. = -3.6 DEGREES REMARK 500 2 DG D 8 N3 - C2 - N2 ANGL. DEV. = 7.8 DEGREES REMARK 500 2 DG D 10 N3 - C2 - N2 ANGL. DEV. = 6.0 DEGREES REMARK 500 2 DG D 12 N3 - C2 - N2 ANGL. DEV. = 7.5 DEGREES REMARK 500 2 DC D 13 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 2 DT D 20 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 299 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 15 -170.00 -124.98 REMARK 500 1 SER A 28 -64.93 -108.34 REMARK 500 1 VAL A 30 -100.22 -126.29 REMARK 500 1 SER A 31 170.49 178.59 REMARK 500 1 ASN A 46 71.16 73.96 REMARK 500 1 LYS A 59 138.90 53.94 REMARK 500 1 SER B 28 -73.37 -102.17 REMARK 500 1 VAL B 30 -96.67 -128.21 REMARK 500 1 SER B 31 167.80 175.27 REMARK 500 1 ASN B 46 71.21 72.56 REMARK 500 1 LYS B 59 143.32 58.63 REMARK 500 2 PRO A 3 146.35 -37.18 REMARK 500 2 GLN A 26 74.70 56.09 REMARK 500 2 SER A 28 -77.38 -72.09 REMARK 500 2 TYR A 47 114.52 -37.16 REMARK 500 2 SER A 61 -72.21 -90.86 REMARK 500 2 VAL B 15 -164.40 -127.43 REMARK 500 2 GLN B 26 76.69 67.24 REMARK 500 2 SER B 28 -72.93 -82.68 REMARK 500 2 SER B 61 -74.85 -95.79 REMARK 500 3 ASN A 46 66.73 73.71 REMARK 500 3 ALA A 57 -79.78 -67.05 REMARK 500 3 LYS A 59 124.60 70.02 REMARK 500 3 ALA B 27 87.05 -68.74 REMARK 500 3 ASN B 46 66.27 69.44 REMARK 500 3 ALA B 57 -73.78 -67.99 REMARK 500 3 LYS B 59 127.39 95.08 REMARK 500 4 SER A 28 -72.31 -163.59 REMARK 500 4 ALA A 32 -50.95 70.24 REMARK 500 4 ASN A 46 63.12 66.65 REMARK 500 4 ASN B 25 -66.01 -108.51 REMARK 500 4 SER B 28 -77.07 -160.70 REMARK 500 4 ALA B 32 -49.75 71.55 REMARK 500 4 ASN B 46 69.64 69.35 REMARK 500 5 ASN A 25 -21.01 -150.21 REMARK 500 5 ALA A 27 93.93 -60.71 REMARK 500 5 SER A 28 -96.86 -142.62 REMARK 500 5 ASN A 46 62.39 65.06 REMARK 500 5 ARG A 51 40.12 -80.51 REMARK 500 5 SER A 61 -108.62 58.67 REMARK 500 5 ASN B 25 -7.27 -149.56 REMARK 500 5 GLN B 26 54.72 -93.56 REMARK 500 5 ALA B 27 87.44 -60.16 REMARK 500 5 SER B 28 -98.50 -136.27 REMARK 500 5 ARG B 51 45.12 -81.31 REMARK 500 5 ALA B 57 -19.73 -49.34 REMARK 500 5 SER B 61 -106.75 44.09 REMARK 500 6 LYS A 2 -63.98 -152.19 REMARK 500 6 ASN A 46 67.31 69.84 REMARK 500 6 PRO A 49 107.88 -53.26 REMARK 500 REMARK 500 THIS ENTRY HAS 96 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 48 PRO A 49 3 149.46 REMARK 500 LYS A 2 PRO A 3 9 141.33 REMARK 500 LYS B 2 PRO B 3 9 144.50 REMARK 500 LYS A 2 PRO A 3 10 144.67 REMARK 500 LYS B 2 PRO B 3 10 143.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DT C 4 0.08 SIDE CHAIN REMARK 500 1 DC C 11 0.09 SIDE CHAIN REMARK 500 1 DG C 12 0.08 SIDE CHAIN REMARK 500 1 DC C 13 0.07 SIDE CHAIN REMARK 500 1 DT C 14 0.09 SIDE CHAIN REMARK 500 1 DC C 22 0.10 SIDE CHAIN REMARK 500 1 DG D 8 0.06 SIDE CHAIN REMARK 500 1 DC D 11 0.09 SIDE CHAIN REMARK 500 1 DG D 12 0.07 SIDE CHAIN REMARK 500 1 DT D 14 0.08 SIDE CHAIN REMARK 500 1 DC D 22 0.11 SIDE CHAIN REMARK 500 1 ARG A 35 0.11 SIDE CHAIN REMARK 500 1 ARG B 22 0.08 SIDE CHAIN REMARK 500 1 ARG B 35 0.10 SIDE CHAIN REMARK 500 2 DT C 7 0.07 SIDE CHAIN REMARK 500 2 DG C 8 0.06 SIDE CHAIN REMARK 500 2 DA C 9 0.05 SIDE CHAIN REMARK 500 2 DC C 13 0.06 SIDE CHAIN REMARK 500 2 DT C 14 0.07 SIDE CHAIN REMARK 500 2 DG D 1 0.07 SIDE CHAIN REMARK 500 2 DG D 8 0.08 SIDE CHAIN REMARK 500 2 DT D 14 0.06 SIDE CHAIN REMARK 500 2 DA D 19 0.06 SIDE CHAIN REMARK 500 2 DC D 22 0.10 SIDE CHAIN REMARK 500 3 DA C 9 0.06 SIDE CHAIN REMARK 500 3 DT C 14 0.07 SIDE CHAIN REMARK 500 3 DC C 17 0.06 SIDE CHAIN REMARK 500 3 DT D 4 0.07 SIDE CHAIN REMARK 500 3 DA D 9 0.06 SIDE CHAIN REMARK 500 3 DC D 15 0.06 SIDE CHAIN REMARK 500 3 DC D 17 0.07 SIDE CHAIN REMARK 500 3 DC D 22 0.08 SIDE CHAIN REMARK 500 3 HIS A 29 0.08 SIDE CHAIN REMARK 500 3 TYR B 12 0.08 SIDE CHAIN REMARK 500 4 DG C 1 0.07 SIDE CHAIN REMARK 500 4 DA C 2 0.05 SIDE CHAIN REMARK 500 4 DT C 7 0.06 SIDE CHAIN REMARK 500 4 DG C 8 0.07 SIDE CHAIN REMARK 500 4 DG C 12 0.08 SIDE CHAIN REMARK 500 4 DA C 16 0.06 SIDE CHAIN REMARK 500 4 DC C 22 0.08 SIDE CHAIN REMARK 500 4 DG D 1 0.08 SIDE CHAIN REMARK 500 4 DT D 7 0.07 SIDE CHAIN REMARK 500 4 DG D 8 0.07 SIDE CHAIN REMARK 500 4 DC D 11 0.06 SIDE CHAIN REMARK 500 4 DA D 16 0.07 SIDE CHAIN REMARK 500 4 DC D 22 0.10 SIDE CHAIN REMARK 500 4 HIS A 29 0.08 SIDE CHAIN REMARK 500 4 HIS B 29 0.08 SIDE CHAIN REMARK 500 5 DG C 1 0.08 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 119 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1CJG A 1 62 UNP P03023 LACI_ECOLI 1 62 DBREF 1CJG B 1 62 UNP P03023 LACI_ECOLI 1 62 DBREF 1CJG C 1 22 PDB 1CJG 1CJG 1 22 DBREF 1CJG D 1 22 PDB 1CJG 1CJG 1 22 SEQRES 1 C 22 DG DA DA DT DT DG DT DG DA DG DC DG DC SEQRES 2 C 22 DT DC DA DC DA DA DT DT DC SEQRES 1 D 22 DG DA DA DT DT DG DT DG DA DG DC DG DC SEQRES 2 D 22 DT DC DA DC DA DA DT DT DC SEQRES 1 A 62 MET LYS PRO VAL THR LEU TYR ASP VAL ALA GLU TYR ALA SEQRES 2 A 62 GLY VAL SER TYR GLN THR VAL SER ARG VAL VAL ASN GLN SEQRES 3 A 62 ALA SER HIS VAL SER ALA LYS THR ARG GLU LYS VAL GLU SEQRES 4 A 62 ALA ALA MET ALA GLU LEU ASN TYR ILE PRO ASN ARG VAL SEQRES 5 A 62 ALA GLN GLN LEU ALA GLY LYS GLN SER LEU SEQRES 1 B 62 MET LYS PRO VAL THR LEU TYR ASP VAL ALA GLU TYR ALA SEQRES 2 B 62 GLY VAL SER TYR GLN THR VAL SER ARG VAL VAL ASN GLN SEQRES 3 B 62 ALA SER HIS VAL SER ALA LYS THR ARG GLU LYS VAL GLU SEQRES 4 B 62 ALA ALA MET ALA GLU LEU ASN TYR ILE PRO ASN ARG VAL SEQRES 5 B 62 ALA GLN GLN LEU ALA GLY LYS GLN SER LEU HELIX 1 1 LEU A 6 ALA A 13 1 8 HELIX 2 2 TYR A 17 VAL A 24 1 8 HELIX 3 3 ALA A 32 LEU A 45 1 14 HELIX 4 4 ARG A 51 LEU A 56 1 6 HELIX 5 5 LEU B 6 ALA B 13 1 8 HELIX 6 6 TYR B 17 VAL B 24 1 8 HELIX 7 7 ALA B 32 GLU B 44 1 13 HELIX 8 8 ARG B 51 LEU B 56 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000