PDB Short entry for 1CO0 HEADER TRANSCRIPTION 30-MAY-99 1CO0 TITLE NMR STUDY OF TRP REPRESSOR-MTR OPERATOR DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*GP*TP*AP*CP*TP*CP*GP*TP*GP*TP*AP*CP*TP*GP*GP*TP*AP COMPND 3 *CP*A)-3'; COMPND 4 CHAIN: E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*TP*GP*TP*AP*CP*CP*AP*GP*TP*AP*CP*AP*CP*GP*AP*GP*TP*AP COMPND 8 *CP*A)-3'; COMPND 9 CHAIN: F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TRP OPERON REPRESSOR; COMPND 13 CHAIN: A, B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: TRP OPERON SEQUENCE FROM ESCHERICHIA COLI; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: TRP OPERON SEQUENCE FROM ESCHERICHIA COLI; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: CY15070,CY17071 KEYWDS TRANSCRIPTION REGULATION, REPRESSOR, DNA-BINDING, TRP, DNA, KEYWDS 2 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR G.P.ZHOU,L.BROCCHIERI,O.JARDETZKY REVDAT 4 27-DEC-23 1CO0 1 REMARK REVDAT 3 16-FEB-22 1CO0 1 REMARK REVDAT 2 24-FEB-09 1CO0 1 VERSN REVDAT 1 16-SEP-03 1CO0 0 JRNL AUTH L.BROCCHIERI,G.P.ZHOU,O.JARDETZKY JRNL TITL ALLOSTERY AND INDUCED FIT, NMR AND MOLECULAR MODELING STUDY JRNL TITL 2 OF THE TRP-REPRESSOR - MTR DNA COMPLEX JRNL EDIT G.R.EATON, G.P.ZHOU, O.JARDETZKY JRNL REF STRUCTURES AND MECHANISMS, V. 827 340 2002 JRNL REF 2 ACS SYMPOSIUM SERIES JRNL REFN ISSN 0841-2373 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.ZHANG,D.ZHAO,M.REVINGTON,W.LEE,X.JIA,C.ARROWSMITH, REMARK 1 AUTH 2 O.JARDETZKY REMARK 1 TITL THE SOLUTION STRUCTURES OF THE TRP REPRESSOR-OPERATOR DNA REMARK 1 TITL 2 COMPLEX REMARK 1 REF J.MOL.BIOL. V. 238 592 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1994.1317 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.ZHAO,C.H.ARROWSMITH,X.JIA,O.JARDETZKY REMARK 1 TITL REFINED SOLUTION STRUCTURES OF THE ESCHERICHIA COLI TRP REMARK 1 TITL 2 HOLO-AND APOREPRESSOR REMARK 1 REF J.MOL.BIOL. V. 229 735 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1993.1076 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CO0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1000001131. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : 5.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 78 H ILE A 82 0.90 REMARK 500 HG3 LYS A 90 H ALA A 91 1.28 REMARK 500 O PRO B 93 H ARG B 97 1.33 REMARK 500 O ALA A 77 HG1 THR A 81 1.39 REMARK 500 O GLY B 78 H ILE B 82 1.40 REMARK 500 O ASN A 87 H LYS A 90 1.41 REMARK 500 O THR A 81 H GLY A 85 1.42 REMARK 500 O GLU B 101 H LEU B 105 1.52 REMARK 500 O ARG B 97 H GLU B 101 1.53 REMARK 500 O ARG B 54 HG13 ILE B 57 1.53 REMARK 500 O ARG B 84 H ASN B 87 1.54 REMARK 500 O GLY B 85 H SER B 88 1.54 REMARK 500 O VAL A 55 H GLU A 59 1.56 REMARK 500 O LEU A 26 H TYR A 30 1.56 REMARK 500 O ALA A 50 H ARG A 54 1.56 REMARK 500 O LEU A 43 HH11 ARG B 54 1.58 REMARK 500 O PRO A 45 H ARG A 48 1.59 REMARK 500 O GLY A 78 N ILE A 82 1.76 REMARK 500 O ALA A 77 OG1 THR A 81 1.96 REMARK 500 O LEU B 36 OD1 ASN B 40 2.11 REMARK 500 OP2 DA F 4 OG1 THR A 83 2.14 REMARK 500 O GLY B 78 N ILE B 82 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DT E 1 C3' DT E 1 C2' -0.098 REMARK 500 1 DT E 1 C2' DT E 1 C1' -0.086 REMARK 500 1 DG E 2 C3' DG E 2 C2' -0.097 REMARK 500 1 DG E 2 C2' DG E 2 C1' -0.087 REMARK 500 1 DT E 3 C3' DT E 3 C2' -0.098 REMARK 500 1 DT E 3 C2' DT E 3 C1' -0.087 REMARK 500 1 DA E 4 C3' DA E 4 C2' -0.096 REMARK 500 1 DA E 4 C2' DA E 4 C1' -0.086 REMARK 500 1 DC E 5 C3' DC E 5 C2' -0.098 REMARK 500 1 DC E 5 C2' DC E 5 C1' -0.086 REMARK 500 1 DT E 6 C3' DT E 6 C2' -0.098 REMARK 500 1 DT E 6 C2' DT E 6 C1' -0.088 REMARK 500 1 DC E 7 C3' DC E 7 C2' -0.097 REMARK 500 1 DC E 7 C2' DC E 7 C1' -0.086 REMARK 500 1 DG E 8 C3' DG E 8 C2' -0.096 REMARK 500 1 DG E 8 C2' DG E 8 C1' -0.089 REMARK 500 1 DT E 9 C3' DT E 9 C2' -0.097 REMARK 500 1 DT E 9 C2' DT E 9 C1' -0.087 REMARK 500 1 DG E 10 C3' DG E 10 C2' -0.098 REMARK 500 1 DG E 10 C2' DG E 10 C1' -0.088 REMARK 500 1 DT E 11 C3' DT E 11 C2' -0.097 REMARK 500 1 DT E 11 C2' DT E 11 C1' -0.082 REMARK 500 1 DA E 12 C3' DA E 12 C2' -0.111 REMARK 500 1 DA E 12 C2' DA E 12 C1' -0.094 REMARK 500 1 DC E 13 C3' DC E 13 C2' -0.100 REMARK 500 1 DC E 13 C2' DC E 13 C1' -0.089 REMARK 500 1 DT E 14 C3' DT E 14 C2' -0.089 REMARK 500 1 DT E 14 C2' DT E 14 C1' -0.085 REMARK 500 1 DG E 15 C3' DG E 15 C2' -0.092 REMARK 500 1 DG E 15 C2' DG E 15 C1' -0.095 REMARK 500 1 DG E 16 C3' DG E 16 C2' -0.097 REMARK 500 1 DG E 16 C2' DG E 16 C1' -0.093 REMARK 500 1 DT E 17 C3' DT E 17 C2' -0.097 REMARK 500 1 DT E 17 C2' DT E 17 C1' -0.089 REMARK 500 1 DA E 18 C3' DA E 18 C2' -0.095 REMARK 500 1 DA E 18 C2' DA E 18 C1' -0.087 REMARK 500 1 DC E 19 C3' DC E 19 C2' -0.097 REMARK 500 1 DC E 19 C2' DC E 19 C1' -0.085 REMARK 500 1 DA E 20 C3' DA E 20 C2' -0.098 REMARK 500 1 DA E 20 C2' DA E 20 C1' -0.086 REMARK 500 1 DT F 1 C3' DT F 1 C2' -0.097 REMARK 500 1 DT F 1 C2' DT F 1 C1' -0.085 REMARK 500 1 DG F 2 C3' DG F 2 C2' -0.092 REMARK 500 1 DG F 2 C2' DG F 2 C1' -0.089 REMARK 500 1 DT F 3 C3' DT F 3 C2' -0.085 REMARK 500 1 DT F 3 C2' DT F 3 C1' -0.101 REMARK 500 1 DA F 4 C3' DA F 4 C2' -0.098 REMARK 500 1 DA F 4 C2' DA F 4 C1' -0.090 REMARK 500 1 DC F 5 C3' DC F 5 C2' -0.098 REMARK 500 1 DC F 5 C2' DC F 5 C1' -0.090 REMARK 500 REMARK 500 THIS ENTRY HAS 1200 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DT E 1 C3' - C2' - C1' ANGL. DEV. = 12.9 DEGREES REMARK 500 1 DT E 1 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DG E 2 C3' - C2' - C1' ANGL. DEV. = 13.0 DEGREES REMARK 500 1 DG E 2 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DG E 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DG E 2 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 DT E 3 C3' - C2' - C1' ANGL. DEV. = 12.9 DEGREES REMARK 500 1 DT E 3 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DA E 4 C3' - C2' - C1' ANGL. DEV. = 13.0 DEGREES REMARK 500 1 DA E 4 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DA E 4 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DC E 5 C3' - C2' - C1' ANGL. DEV. = 13.0 DEGREES REMARK 500 1 DC E 5 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 DT E 6 C3' - C2' - C1' ANGL. DEV. = 13.0 DEGREES REMARK 500 1 DT E 6 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DC E 7 C3' - C2' - C1' ANGL. DEV. = 12.8 DEGREES REMARK 500 1 DC E 7 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DG E 8 C3' - C2' - C1' ANGL. DEV. = 13.0 DEGREES REMARK 500 1 DG E 8 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DG E 8 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DG E 8 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 DT E 9 C3' - C2' - C1' ANGL. DEV. = 12.9 DEGREES REMARK 500 1 DT E 9 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DG E 10 C3' - C2' - C1' ANGL. DEV. = 13.0 DEGREES REMARK 500 1 DG E 10 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DG E 10 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DG E 10 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 DT E 11 C3' - C2' - C1' ANGL. DEV. = 12.9 DEGREES REMARK 500 1 DT E 11 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 DA E 12 C3' - C2' - C1' ANGL. DEV. = 13.0 DEGREES REMARK 500 1 DA E 12 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DA E 12 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DC E 13 C3' - C2' - C1' ANGL. DEV. = 12.7 DEGREES REMARK 500 1 DC E 13 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 DT E 14 C3' - C2' - C1' ANGL. DEV. = 12.2 DEGREES REMARK 500 1 DT E 14 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DG E 15 C3' - C2' - C1' ANGL. DEV. = 11.4 DEGREES REMARK 500 1 DG E 15 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 1 DG E 15 C5 - N7 - C8 ANGL. DEV. = -3.3 DEGREES REMARK 500 1 DG E 15 N7 - C8 - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 DG E 15 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 DG E 16 C3' - C2' - C1' ANGL. DEV. = 12.6 DEGREES REMARK 500 1 DG E 16 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DG E 16 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DG E 16 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 DT E 17 C3' - C2' - C1' ANGL. DEV. = 12.9 DEGREES REMARK 500 1 DT E 17 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DA E 18 C3' - C2' - C1' ANGL. DEV. = 12.8 DEGREES REMARK 500 1 DA E 18 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 1 DA E 18 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 1683 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 7 81.90 35.48 REMARK 500 1 MET A 11 -73.43 64.17 REMARK 500 1 ALA A 12 119.48 62.26 REMARK 500 1 GLU A 13 -148.37 35.15 REMARK 500 1 GLN A 14 36.63 -93.79 REMARK 500 1 ARG A 15 111.34 56.40 REMARK 500 1 LEU A 26 -73.71 -65.56 REMARK 500 1 ASN A 32 -138.57 -118.18 REMARK 500 1 LEU A 43 -88.42 -132.21 REMARK 500 1 GLU A 65 -157.99 174.55 REMARK 500 1 MET A 66 4.24 58.19 REMARK 500 1 GLN A 68 56.00 164.22 REMARK 500 1 ARG A 69 19.05 54.67 REMARK 500 1 GLU A 70 -25.70 -178.63 REMARK 500 1 ALA A 77 58.70 142.16 REMARK 500 1 ILE A 79 -82.49 -46.78 REMARK 500 1 LEU A 104 -44.39 -149.97 REMARK 500 1 LEU A 105 -31.45 -155.04 REMARK 500 1 SER A 107 -75.90 -177.80 REMARK 500 1 SER B 8 92.66 -61.60 REMARK 500 1 ALA B 9 -178.31 53.19 REMARK 500 1 ALA B 10 -77.61 -105.79 REMARK 500 1 MET B 11 -167.12 50.94 REMARK 500 1 ARG B 15 -65.79 65.72 REMARK 500 1 GLN B 17 -80.65 -61.26 REMARK 500 1 GLU B 18 46.67 26.48 REMARK 500 1 TRP B 19 -37.96 -145.19 REMARK 500 1 ASN B 32 -142.39 -118.79 REMARK 500 1 LEU B 34 34.14 -94.31 REMARK 500 1 ASN B 40 -53.43 -126.82 REMARK 500 1 LEU B 41 -7.99 -52.82 REMARK 500 1 LEU B 43 -74.74 63.45 REMARK 500 1 PRO B 45 16.41 -60.87 REMARK 500 1 ASP B 46 40.79 -74.53 REMARK 500 1 GLU B 47 18.19 -69.33 REMARK 500 1 ARG B 63 -56.98 -125.72 REMARK 500 1 SER B 67 159.53 59.80 REMARK 500 1 GLN B 68 73.50 34.18 REMARK 500 1 ARG B 69 -23.94 -171.32 REMARK 500 1 GLU B 70 -77.39 -110.11 REMARK 500 1 LEU B 71 30.04 179.37 REMARK 500 1 LEU B 75 29.84 -156.04 REMARK 500 1 ALA B 77 110.05 162.19 REMARK 500 1 ILE B 79 -45.67 -24.84 REMARK 500 1 ALA B 92 108.74 26.51 REMARK 500 1 VAL B 94 -35.73 -39.74 REMARK 500 1 LEU B 104 -51.17 -140.71 REMARK 500 1 LEU B 105 -55.59 -155.48 REMARK 500 1 LYS B 106 45.57 34.33 REMARK 500 2 SER A 5 88.93 -162.43 REMARK 500 REMARK 500 THIS ENTRY HAS 818 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DT F 3 0.11 SIDE CHAIN REMARK 500 1 ARG A 56 0.08 SIDE CHAIN REMARK 500 2 DG E 15 0.05 SIDE CHAIN REMARK 500 2 DA E 18 0.05 SIDE CHAIN REMARK 500 2 DT F 3 0.06 SIDE CHAIN REMARK 500 2 ARG A 54 0.09 SIDE CHAIN REMARK 500 2 ARG A 84 0.09 SIDE CHAIN REMARK 500 2 ARG B 54 0.12 SIDE CHAIN REMARK 500 3 DT E 17 0.07 SIDE CHAIN REMARK 500 3 DA E 18 0.07 SIDE CHAIN REMARK 500 3 ARG A 21 0.19 SIDE CHAIN REMARK 500 3 ARG A 54 0.08 SIDE CHAIN REMARK 500 3 ARG A 56 0.08 SIDE CHAIN REMARK 500 4 DG E 16 0.05 SIDE CHAIN REMARK 500 4 DA E 18 0.05 SIDE CHAIN REMARK 500 4 DT F 3 0.06 SIDE CHAIN REMARK 500 4 DA F 4 0.05 SIDE CHAIN REMARK 500 4 ARG A 54 0.12 SIDE CHAIN REMARK 500 4 ARG B 21 0.08 SIDE CHAIN REMARK 500 5 DG E 16 0.05 SIDE CHAIN REMARK 500 5 DT F 3 0.10 SIDE CHAIN REMARK 500 5 DA F 4 0.06 SIDE CHAIN REMARK 500 5 ARG B 54 0.24 SIDE CHAIN REMARK 500 6 DA E 18 0.07 SIDE CHAIN REMARK 500 6 DT F 3 0.10 SIDE CHAIN REMARK 500 6 ARG A 56 0.14 SIDE CHAIN REMARK 500 7 DA E 18 0.06 SIDE CHAIN REMARK 500 7 ARG A 54 0.08 SIDE CHAIN REMARK 500 7 ARG A 56 0.11 SIDE CHAIN REMARK 500 7 ARG B 21 0.09 SIDE CHAIN REMARK 500 7 ARG B 54 0.13 SIDE CHAIN REMARK 500 8 DA E 18 0.05 SIDE CHAIN REMARK 500 8 DT F 3 0.07 SIDE CHAIN REMARK 500 8 ARG A 56 0.08 SIDE CHAIN REMARK 500 9 DA E 18 0.06 SIDE CHAIN REMARK 500 9 DT F 3 0.07 SIDE CHAIN REMARK 500 9 ARG A 84 0.09 SIDE CHAIN REMARK 500 9 ARG B 54 0.20 SIDE CHAIN REMARK 500 10 DA E 18 0.06 SIDE CHAIN REMARK 500 10 DT F 3 0.08 SIDE CHAIN REMARK 500 10 ARG A 84 0.14 SIDE CHAIN REMARK 500 10 ARG B 54 0.10 SIDE CHAIN REMARK 500 10 ARG B 97 0.29 SIDE CHAIN REMARK 500 11 DA F 4 0.07 SIDE CHAIN REMARK 500 12 DT F 3 0.06 SIDE CHAIN REMARK 500 12 ARG B 84 0.10 SIDE CHAIN REMARK 500 13 DT F 3 0.06 SIDE CHAIN REMARK 500 13 ARG A 56 0.13 SIDE CHAIN REMARK 500 13 ARG A 69 0.08 SIDE CHAIN REMARK 500 14 DA E 18 0.05 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 56 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP B 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP B 201 DBREF 1CO0 A 2 108 UNP P0A881 TRPR_ECOLI 1 107 DBREF 1CO0 B 2 108 UNP P0A881 TRPR_ECOLI 1 107 DBREF 1CO0 E 1 20 PDB 1CO0 1CO0 1 20 DBREF 1CO0 F 1 20 PDB 1CO0 1CO0 1 20 SEQRES 1 E 20 DT DG DT DA DC DT DC DG DT DG DT DA DC SEQRES 2 E 20 DT DG DG DT DA DC DA SEQRES 1 F 20 DT DG DT DA DC DC DA DG DT DA DC DA DC SEQRES 2 F 20 DG DA DG DT DA DC DA SEQRES 1 A 107 ALA GLN GLN SER PRO TYR SER ALA ALA MET ALA GLU GLN SEQRES 2 A 107 ARG HIS GLN GLU TRP LEU ARG PHE VAL ASP LEU LEU LYS SEQRES 3 A 107 ASN ALA TYR GLN ASN ASP LEU HIS LEU PRO LEU LEU ASN SEQRES 4 A 107 LEU MET LEU THR PRO ASP GLU ARG GLU ALA LEU GLY THR SEQRES 5 A 107 ARG VAL ARG ILE VAL GLU GLU LEU LEU ARG GLY GLU MET SEQRES 6 A 107 SER GLN ARG GLU LEU LYS ASN GLU LEU GLY ALA GLY ILE SEQRES 7 A 107 ALA THR ILE THR ARG GLY SER ASN SER LEU LYS ALA ALA SEQRES 8 A 107 PRO VAL GLU LEU ARG GLN TRP LEU GLU GLU VAL LEU LEU SEQRES 9 A 107 LYS SER ASP SEQRES 1 B 107 ALA GLN GLN SER PRO TYR SER ALA ALA MET ALA GLU GLN SEQRES 2 B 107 ARG HIS GLN GLU TRP LEU ARG PHE VAL ASP LEU LEU LYS SEQRES 3 B 107 ASN ALA TYR GLN ASN ASP LEU HIS LEU PRO LEU LEU ASN SEQRES 4 B 107 LEU MET LEU THR PRO ASP GLU ARG GLU ALA LEU GLY THR SEQRES 5 B 107 ARG VAL ARG ILE VAL GLU GLU LEU LEU ARG GLY GLU MET SEQRES 6 B 107 SER GLN ARG GLU LEU LYS ASN GLU LEU GLY ALA GLY ILE SEQRES 7 B 107 ALA THR ILE THR ARG GLY SER ASN SER LEU LYS ALA ALA SEQRES 8 B 107 PRO VAL GLU LEU ARG GLN TRP LEU GLU GLU VAL LEU LEU SEQRES 9 B 107 LYS SER ASP HET TRP B 109 26 HET TRP B 201 26 HETNAM TRP TRYPTOPHAN FORMUL 5 TRP 2(C11 H12 N2 O2) HELIX 1 1 GLN A 17 TYR A 30 1 14 HELIX 2 2 LEU A 36 LEU A 41 1 6 HELIX 3 3 ASP A 46 ARG A 63 5 18 HELIX 4 4 LEU A 71 LEU A 75 1 5 HELIX 5 5 ILE A 79 ALA A 91 1 13 HELIX 6 6 LEU A 96 VAL A 103 1 8 HELIX 7 7 LEU B 20 TYR B 30 1 11 HELIX 8 8 ARG B 48 GLY B 52 1 5 HELIX 9 9 VAL B 55 LEU B 61 1 7 HELIX 10 10 ILE B 79 ALA B 91 1 13 HELIX 11 11 VAL B 94 GLU B 102 1 9 SITE 1 AC1 12 ARG A 54 ILE A 57 THR A 81 ARG A 84 SITE 2 AC1 12 GLY A 85 MET B 42 LEU B 43 THR B 44 SITE 3 AC1 12 PRO B 45 GLU B 47 DA E 12 DC E 13 SITE 1 AC2 10 LEU A 43 THR A 44 PRO A 45 ILE B 57 SITE 2 AC2 10 THR B 81 ARG B 84 GLY B 85 LYS B 90 SITE 3 AC2 10 DA F 12 DC F 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000