PDB Short entry for 1CRX HEADER REPLICATION/DNA 02-JUL-97 1CRX TITLE CRE RECOMBINASE/DNA COMPLEX REACTION INTERMEDIATE I COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3'); COMPND 4 CHAIN: C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T) COMPND 9 -3'); COMPND 10 CHAIN: D, F; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(P*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*GP*C)-3'); COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: CRE RECOMBINASE; COMPND 19 CHAIN: A, B; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 SYNTHETIC: YES; SOURCE 7 MOL_ID: 4; SOURCE 8 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P1; SOURCE 9 ORGANISM_TAXID: 10678; SOURCE 10 ATCC: 25404-B1; SOURCE 11 GENE: CRE; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS SITE-SPECIFIC RECOMBINASE, PROTEIN:DNA COMPLEX, REACTION KEYWDS 2 INTERMEDIATE, COMPLEX (RECOMBINASE/DNA), REPLICATION/DNA KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.GUO,D.N.GOPAUL,G.D.VAN DUYNE REVDAT 3 24-FEB-09 1CRX 1 VERSN REVDAT 2 01-APR-03 1CRX 1 JRNL REVDAT 1 14-OCT-98 1CRX 0 JRNL AUTH F.GUO,D.N.GOPAUL,G.D.VAN DUYNE JRNL TITL STRUCTURE OF CRE RECOMBINASE COMPLEXED WITH DNA IN JRNL TITL 2 A SITE-SPECIFIC RECOMBINATION SYNAPSE. JRNL REF NATURE V. 389 40 1997 JRNL REFN ISSN 0028-0836 JRNL PMID 9288963 JRNL DOI 10.1038/37925 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 41368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4137 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4040 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 454 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5100 REMARK 3 NUCLEIC ACID ATOMS : 1386 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 488 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 0.85 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.400 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.400 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.100 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : PARAM19.SOL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CRX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42896 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 6.90000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 18.90000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR, MAD REMARK 200 SOFTWARE USED: MLPHARE, LOCAL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM ACETATE, PH 5 24% MPD 20 MM REMARK 280 CACL2, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.85000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.50000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.85000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.20000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.85000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.50000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.20000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.85000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.50000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 324 O1 PO4 B 342 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 47.24 -108.25 REMARK 500 ASN A 60 65.43 66.88 REMARK 500 PHE A 64 114.41 -164.68 REMARK 500 LYS A 201 28.07 -141.71 REMARK 500 SER A 214 175.75 -57.25 REMARK 500 PRO A 250 156.07 -49.95 REMARK 500 SER A 251 147.76 -172.38 REMARK 500 ALA A 275 151.75 -34.20 REMARK 500 ASP A 277 31.17 -73.29 REMARK 500 ASP A 278 -132.87 52.42 REMARK 500 SER A 279 170.89 50.25 REMARK 500 GLN A 281 154.04 -44.84 REMARK 500 ASP B 33 44.01 -100.77 REMARK 500 SER B 186 -161.82 -129.72 REMARK 500 ALA B 249 79.45 -113.79 REMARK 500 SER B 251 141.70 -173.52 REMARK 500 TYR B 283 32.04 72.33 REMARK 500 ARG B 326 -39.11 -21.40 REMARK 500 ASP B 329 95.09 -61.18 REMARK 500 GLU B 340 39.46 -82.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG C 10 0.05 SIDE_CHAIN REMARK 500 DA E 4 0.06 SIDE_CHAIN REMARK 500 DA E 5 0.06 SIDE_CHAIN REMARK 500 DC F 6 0.08 SIDE_CHAIN REMARK 500 DA F 8 0.06 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 23 DISTANCE = 13.19 ANGSTROMS REMARK 525 HOH E 35 DISTANCE = 15.84 ANGSTROMS REMARK 525 HOH E 37 DISTANCE = 8.49 ANGSTROMS REMARK 525 HOH E 43 DISTANCE = 10.55 ANGSTROMS REMARK 525 HOH A 498 DISTANCE = 6.39 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PO4 B 342 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 SITE_IDENTIFIER: ACU REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 342 DBREF 1CRX A 20 341 UNP P06956 RECR_BPP1 20 341 DBREF 1CRX B 20 341 UNP P06956 RECR_BPP1 20 341 DBREF 1CRX C 1 15 PDB 1CRX 1CRX 1 15 DBREF 1CRX D 1 19 PDB 1CRX 1CRX 1 19 DBREF 1CRX E 2 16 PDB 1CRX 1CRX 2 16 DBREF 1CRX F 1 19 PDB 1CRX 1CRX 1 19 SEQRES 1 C 15 DT DA DT DA DA DC DT DT DC DG DT DA DT SEQRES 2 C 15 DA DG SEQRES 1 D 19 DA DT DA DT DG DC DT DA DT DA DC DG DA SEQRES 2 D 19 DA DG DT DT DA DT SEQRES 1 E 15 DA DT DA DA DC DT DT DC DG DT DA DT DA SEQRES 2 E 15 DG DC SEQRES 1 F 19 DA DT DA DT DG DC DT DA DT DA DC DG DA SEQRES 2 F 19 DA DG DT DT DA DT SEQRES 1 A 322 SER ASP GLU VAL ARG LYS ASN LEU MET ASP MET PHE ARG SEQRES 2 A 322 ASP ARG GLN ALA PHE SER GLU HIS THR TRP LYS MET LEU SEQRES 3 A 322 LEU SER VAL CYS ARG SER TRP ALA ALA TRP CYS LYS LEU SEQRES 4 A 322 ASN ASN ARG LYS TRP PHE PRO ALA GLU PRO GLU ASP VAL SEQRES 5 A 322 ARG ASP TYR LEU LEU TYR LEU GLN ALA ARG GLY LEU ALA SEQRES 6 A 322 VAL LYS THR ILE GLN GLN HIS LEU GLY GLN LEU ASN MET SEQRES 7 A 322 LEU HIS ARG ARG SER GLY LEU PRO ARG PRO SER ASP SER SEQRES 8 A 322 ASN ALA VAL SER LEU VAL MET ARG ARG ILE ARG LYS GLU SEQRES 9 A 322 ASN VAL ASP ALA GLY GLU ARG ALA LYS GLN ALA LEU ALA SEQRES 10 A 322 PHE GLU ARG THR ASP PHE ASP GLN VAL ARG SER LEU MET SEQRES 11 A 322 GLU ASN SER ASP ARG CYS GLN ASP ILE ARG ASN LEU ALA SEQRES 12 A 322 PHE LEU GLY ILE ALA TYR ASN THR LEU LEU ARG ILE ALA SEQRES 13 A 322 GLU ILE ALA ARG ILE ARG VAL LYS ASP ILE SER ARG THR SEQRES 14 A 322 ASP GLY GLY ARG MET LEU ILE HIS ILE GLY ARG THR LYS SEQRES 15 A 322 THR LEU VAL SER THR ALA GLY VAL GLU LYS ALA LEU SER SEQRES 16 A 322 LEU GLY VAL THR LYS LEU VAL GLU ARG TRP ILE SER VAL SEQRES 17 A 322 SER GLY VAL ALA ASP ASP PRO ASN ASN TYR LEU PHE CYS SEQRES 18 A 322 ARG VAL ARG LYS ASN GLY VAL ALA ALA PRO SER ALA THR SEQRES 19 A 322 SER GLN LEU SER THR ARG ALA LEU GLU GLY ILE PHE GLU SEQRES 20 A 322 ALA THR HIS ARG LEU ILE TYR GLY ALA LYS ASP ASP SER SEQRES 21 A 322 GLY GLN ARG TYR LEU ALA TRP SER GLY HIS SER ALA ARG SEQRES 22 A 322 VAL GLY ALA ALA ARG ASP MET ALA ARG ALA GLY VAL SER SEQRES 23 A 322 ILE PRO GLU ILE MET GLN ALA GLY GLY TRP THR ASN VAL SEQRES 24 A 322 ASN ILE VAL MET ASN TYR ILE ARG ASN LEU ASP SER GLU SEQRES 25 A 322 THR GLY ALA MET VAL ARG LEU LEU GLU ASP SEQRES 1 B 322 SER ASP GLU VAL ARG LYS ASN LEU MET ASP MET PHE ARG SEQRES 2 B 322 ASP ARG GLN ALA PHE SER GLU HIS THR TRP LYS MET LEU SEQRES 3 B 322 LEU SER VAL CYS ARG SER TRP ALA ALA TRP CYS LYS LEU SEQRES 4 B 322 ASN ASN ARG LYS TRP PHE PRO ALA GLU PRO GLU ASP VAL SEQRES 5 B 322 ARG ASP TYR LEU LEU TYR LEU GLN ALA ARG GLY LEU ALA SEQRES 6 B 322 VAL LYS THR ILE GLN GLN HIS LEU GLY GLN LEU ASN MET SEQRES 7 B 322 LEU HIS ARG ARG SER GLY LEU PRO ARG PRO SER ASP SER SEQRES 8 B 322 ASN ALA VAL SER LEU VAL MET ARG ARG ILE ARG LYS GLU SEQRES 9 B 322 ASN VAL ASP ALA GLY GLU ARG ALA LYS GLN ALA LEU ALA SEQRES 10 B 322 PHE GLU ARG THR ASP PHE ASP GLN VAL ARG SER LEU MET SEQRES 11 B 322 GLU ASN SER ASP ARG CYS GLN ASP ILE ARG ASN LEU ALA SEQRES 12 B 322 PHE LEU GLY ILE ALA TYR ASN THR LEU LEU ARG ILE ALA SEQRES 13 B 322 GLU ILE ALA ARG ILE ARG VAL LYS ASP ILE SER ARG THR SEQRES 14 B 322 ASP GLY GLY ARG MET LEU ILE HIS ILE GLY ARG THR LYS SEQRES 15 B 322 THR LEU VAL SER THR ALA GLY VAL GLU LYS ALA LEU SER SEQRES 16 B 322 LEU GLY VAL THR LYS LEU VAL GLU ARG TRP ILE SER VAL SEQRES 17 B 322 SER GLY VAL ALA ASP ASP PRO ASN ASN TYR LEU PHE CYS SEQRES 18 B 322 ARG VAL ARG LYS ASN GLY VAL ALA ALA PRO SER ALA THR SEQRES 19 B 322 SER GLN LEU SER THR ARG ALA LEU GLU GLY ILE PHE GLU SEQRES 20 B 322 ALA THR HIS ARG LEU ILE TYR GLY ALA LYS ASP ASP SER SEQRES 21 B 322 GLY GLN ARG TYR LEU ALA TRP SER GLY HIS SER ALA ARG SEQRES 22 B 322 VAL GLY ALA ALA ARG ASP MET ALA ARG ALA GLY VAL SER SEQRES 23 B 322 ILE PRO GLU ILE MET GLN ALA GLY GLY TRP THR ASN VAL SEQRES 24 B 322 ASN ILE VAL MET ASN TYR ILE ARG ASN LEU ASP SER GLU SEQRES 25 B 322 THR GLY ALA MET VAL ARG LEU LEU GLU ASP MODRES 1CRX TYR B 324 TYR CRE-PO4-DNA LINK MODRES 1CRX DG C 15 DG CRE-PO4-DNA LINK HET PO4 B 342 3 HETNAM PO4 PHOSPHATE ION FORMUL 7 PO4 O4 P 3- FORMUL 8 HOH *488(H2 O) HELIX 1 1 ASP A 21 ARG A 32 1 12 HELIX 2 2 ARG A 34 ALA A 36 5 3 HELIX 3 3 GLU A 39 ASN A 59 1 21 HELIX 4 4 PRO A 68 ALA A 80 1 13 HELIX 5 5 VAL A 85 ARG A 101 1 17 HELIX 6 6 PRO A 107 ASP A 109 5 3 HELIX 7 7 ASN A 111 ALA A 127 1 17 HELIX 8 8 ARG A 139 GLU A 150 1 12 HELIX 9 9 CYS A 155 THR A 170 1 16 HELIX 10 10 ILE A 174 ARG A 179 1 6 HELIX 11 11 VAL A 182 ASP A 184 5 3 HELIX 12 12 ASP A 189 GLY A 191 5 3 HELIX 13 13 LEU A 215 SER A 226 1 12 HELIX 14 14 VAL A 230 ASP A 232 5 3 HELIX 15 15 THR A 258 TYR A 273 1 16 HELIX 16 16 SER A 290 ARG A 301 1 12 HELIX 17 17 ILE A 306 GLY A 313 1 8 HELIX 18 18 VAL A 321 TYR A 324 1 4 HELIX 19 19 ASP A 329 GLU A 331 5 3 HELIX 20 20 ALA A 334 LEU A 339 1 6 HELIX 21 21 ASP B 21 ARG B 32 1 12 HELIX 22 22 ARG B 34 ALA B 36 5 3 HELIX 23 23 GLU B 39 ASN B 59 1 21 HELIX 24 24 PRO B 68 ARG B 81 1 14 HELIX 25 25 VAL B 85 ARG B 101 1 17 HELIX 26 26 PRO B 107 ASP B 109 5 3 HELIX 27 27 ASN B 111 ASP B 126 1 16 HELIX 28 28 ARG B 139 ASN B 151 1 13 HELIX 29 29 CYS B 155 THR B 170 1 16 HELIX 30 30 ILE B 174 ILE B 177 1 4 HELIX 31 31 VAL B 182 ASP B 184 5 3 HELIX 32 32 LEU B 215 SER B 228 1 14 HELIX 33 33 VAL B 230 ASP B 232 5 3 HELIX 34 34 THR B 258 TYR B 273 1 16 HELIX 35 35 SER B 290 ALA B 302 1 13 HELIX 36 36 ILE B 306 GLY B 313 1 8 HELIX 37 37 ASN B 319 LEU B 328 1 10 HELIX 38 38 ALA B 334 LEU B 339 1 6 SHEET 1 A 3 ILE A 185 ARG A 187 0 SHEET 2 A 3 MET A 193 ILE A 197 -1 N LEU A 194 O SER A 186 SHEET 3 A 3 VAL A 209 ALA A 212 -1 N VAL A 209 O ILE A 197 SHEET 1 B 2 ARG A 241 VAL A 242 0 SHEET 2 B 2 ALA A 248 ALA A 249 -1 N ALA A 249 O ARG A 241 SHEET 1 C 3 ILE B 185 ARG B 187 0 SHEET 2 C 3 MET B 193 THR B 200 -1 O LEU B 194 N SER B 186 SHEET 3 C 3 LEU B 203 ALA B 212 -1 O LEU B 203 N THR B 200 SHEET 1 D 2 ARG B 241 VAL B 242 0 SHEET 2 D 2 ALA B 248 ALA B 249 -1 N ALA B 249 O ARG B 241 LINK OH TYR B 324 P PO4 B 342 1555 1555 1.61 LINK O3' DG C 15 P PO4 B 342 1555 1555 1.60 CISPEP 1 PHE A 64 PRO A 65 0 -0.23 CISPEP 2 PHE B 64 PRO B 65 0 -0.42 SITE 1 ACT 5 ARG A 173 HIS A 289 ARG A 292 TRP A 315 SITE 2 ACT 5 TYR A 324 SITE 1 ACU 5 ARG B 173 HIS B 289 ARG B 292 TRP B 315 SITE 2 ACU 5 TYR B 324 SITE 1 AC1 6 ARG B 173 HIS B 289 ARG B 292 TRP B 315 SITE 2 AC1 6 TYR B 324 DG C 15 CRYST1 107.700 121.000 180.400 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009285 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005543 0.00000