PDB Short entry for 1CSY HEADER COMPLEX (PHOSPHOTRANSFERASE/PEPTIDE) 03-OCT-95 1CSY TITLE SYK TYROSINE KINASE C-TERMINAL SH2 DOMAIN COMPLEXED WITH A TITLE 2 PHOSPHOPEPTIDEFROM THE GAMMA CHAIN OF THE HIGH AFFINITY IMMUNOGLOBIN TITLE 3 G RECEPTOR, NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYK PROTEIN TYROSINE KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL SH2 DOMAIN; COMPND 5 EC: 2.7.1.112; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ACETYL-THR-PTR-GLU-THR-LEU-NH2; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: THE LIGAND IS A PHOSPHOTYROSINE CONTAINING PEPTIDE COMPND 12 DERIVED FROM THE HIGH-AFFINITY IGE RECEPTOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BL21; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 17 OTHER_DETAILS: RECOMBINANT CONSTRUCT ADDED TO PROTEIN DOMAIN KEYWDS PROTEIN-TYROSINE KINASE SH2 DOMAIN, COMPLEX (PHOSPHOTRANSFERASE- KEYWDS 2 PEPTIDE), COMPLEX (PHOSPHOTRANSFERASE-PEPTIDE) COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.S.NARULA,R.W.YUAN,S.E.ADAMS,O.M.GREEN,J.GREEN,T.B.PHILLIPS, AUTHOR 2 L.D.ZYDOWSKY,M.C.BOTFIELD,M.H.HATADA,E.R.LAIRD,M.J.ZOLLER,J.L.KARAS, AUTHOR 3 D.C.DALGARNO REVDAT 4 22-FEB-12 1CSY 1 JRNL VERSN REVDAT 3 24-FEB-09 1CSY 1 VERSN REVDAT 2 01-APR-03 1CSY 1 JRNL REVDAT 1 08-NOV-96 1CSY 0 JRNL AUTH S.S.NARULA,R.W.YUAN,S.E.ADAMS,O.M.GREEN,J.GREEN,T.B.PHILIPS, JRNL AUTH 2 L.D.ZYDOWSKY,M.C.BOTFIELD,M.HATADA,E.R.LAIRD,M.J.ZOLLER, JRNL AUTH 3 J.L.KARAS,D.C.DALGARNO JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL SH2 DOMAIN OF THE HUMAN JRNL TITL 2 TYROSINE KINASE SYK COMPLEXED WITH A PHOSPHOTYROSINE JRNL TITL 3 PENTAPEPTIDE. JRNL REF STRUCTURE V. 3 1061 1995 JRNL REFN ISSN 0969-2126 JRNL PMID 8590001 JRNL DOI 10.1016/S0969-2126(01)00242-8 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CSY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER A 33 HZ1 LYS A 38 1.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 9 HIS A 62 CG HIS A 62 CD2 0.054 REMARK 500 11 HIS A 62 CG HIS A 62 CD2 0.054 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -165.81 -106.07 REMARK 500 1 ARG A 4 136.56 -173.17 REMARK 500 1 ALA A 5 -94.86 -78.24 REMARK 500 1 SER A 6 -156.63 -92.54 REMARK 500 1 VAL A 7 161.80 -43.90 REMARK 500 1 SER A 9 134.90 63.57 REMARK 500 1 LYS A 12 99.23 -36.19 REMARK 500 1 MET A 13 153.33 155.57 REMARK 500 1 TRP A 15 11.88 -68.42 REMARK 500 1 ILE A 20 164.26 -41.45 REMARK 500 1 SER A 21 -72.27 -84.53 REMARK 500 1 ARG A 22 -41.22 175.49 REMARK 500 1 SER A 33 122.52 72.83 REMARK 500 1 LYS A 34 -44.77 -150.97 REMARK 500 1 ASN A 46 -45.26 -145.66 REMARK 500 1 ASN A 47 46.21 -169.43 REMARK 500 1 HIS A 56 57.46 -108.00 REMARK 500 1 GLU A 57 110.66 55.87 REMARK 500 1 LYS A 67 -168.81 -110.17 REMARK 500 1 ASP A 68 50.41 -107.31 REMARK 500 1 LYS A 69 29.86 47.96 REMARK 500 1 LYS A 79 -138.83 -139.86 REMARK 500 1 ASP A 96 -9.82 71.90 REMARK 500 1 LEU A 98 -169.64 -52.31 REMARK 500 1 VAL A 101 175.75 -52.35 REMARK 500 1 THR A 103 -36.00 -152.11 REMARK 500 1 GLN A 107 161.65 -36.63 REMARK 500 1 ILE A 109 -70.05 -119.08 REMARK 500 1 THR A 111 -83.18 -88.51 REMARK 500 1 GLU B 3 -175.13 -55.59 REMARK 500 2 SER A 2 76.28 -109.04 REMARK 500 2 ARG A 4 133.07 -176.38 REMARK 500 2 ALA A 5 -92.08 -178.27 REMARK 500 2 VAL A 7 67.77 36.02 REMARK 500 2 HIS A 10 -37.97 -36.65 REMARK 500 2 TRP A 15 8.69 -69.41 REMARK 500 2 LYS A 19 -121.05 -110.90 REMARK 500 2 ILE A 20 162.54 52.45 REMARK 500 2 SER A 21 -68.30 -90.96 REMARK 500 2 ARG A 22 -45.91 171.46 REMARK 500 2 SER A 33 -144.32 62.85 REMARK 500 2 LYS A 34 -59.61 82.68 REMARK 500 2 THR A 35 4.30 -65.58 REMARK 500 2 ASN A 36 97.83 51.25 REMARK 500 2 ARG A 44 -90.49 -161.05 REMARK 500 2 ASP A 45 -122.95 -108.76 REMARK 500 2 ASN A 47 -88.13 -92.29 REMARK 500 2 HIS A 56 -86.80 -81.10 REMARK 500 2 ASP A 68 50.29 -117.31 REMARK 500 2 SER A 74 -156.26 -148.62 REMARK 500 REMARK 500 THIS ENTRY HAS 619 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 B 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CSZ RELATED DB: PDB DBREF 1CSY A 10 112 UNP P43405 KSYK_HUMAN 163 265 DBREF 1CSY B 0 6 PDB 1CSY 1CSY 0 6 SEQRES 1 A 112 GLY SER ARG ARG ALA SER VAL GLY SER HIS GLU LYS MET SEQRES 2 A 112 PRO TRP PHE HIS GLY LYS ILE SER ARG GLU GLU SER GLU SEQRES 3 A 112 GLN ILE VAL LEU ILE GLY SER LYS THR ASN GLY LYS PHE SEQRES 4 A 112 LEU ILE ARG ALA ARG ASP ASN ASN GLY SER TYR ALA LEU SEQRES 5 A 112 CYS LEU LEU HIS GLU GLY LYS VAL LEU HIS TYR ARG ILE SEQRES 6 A 112 ASP LYS ASP LYS THR GLY LYS LEU SER ILE PRO GLU GLY SEQRES 7 A 112 LYS LYS PHE ASP THR LEU TRP GLN LEU VAL GLU HIS TYR SEQRES 8 A 112 SER TYR LYS ALA ASP GLY LEU LEU ARG VAL LEU THR VAL SEQRES 9 A 112 PRO CYS GLN LYS ILE GLY THR GLN SEQRES 1 B 7 ACE THR PTR GLU THR LEU NH2 MODRES 1CSY PTR B 2 TYR O-PHOSPHOTYROSINE HET ACE B 0 6 HET PTR B 2 24 HET NH2 B 6 3 HETNAM ACE ACETYL GROUP HETNAM PTR O-PHOSPHOTYROSINE HETNAM NH2 AMINO GROUP HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 ACE C2 H4 O FORMUL 2 PTR C9 H12 N O6 P FORMUL 2 NH2 H2 N HELIX 1 1 GLU A 23 ILE A 31 1 9 HELIX 2 2 LEU A 84 TYR A 93 1 10 SHEET 1 A 3 PHE A 39 ALA A 43 0 SHEET 2 A 3 TYR A 50 LEU A 55 -1 N CYS A 53 O LEU A 40 SHEET 3 A 3 LYS A 59 ILE A 65 -1 N ILE A 65 O TYR A 50 LINK C ACE B 0 N THR B 1 1555 1555 1.34 LINK N PTR B 2 C THR B 1 1555 1555 1.34 LINK C PTR B 2 N GLU B 3 1555 1555 1.33 LINK N NH2 B 6 C LEU B 5 1555 1555 1.35 SITE 1 AC2 3 GLU A 77 THR B 4 LEU B 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000