PDB Short entry for 1D7K HEADER LYASE 18-OCT-99 1D7K TITLE CRYSTAL STRUCTURE OF HUMAN ORNITHINE DECARBOXYLASE AT 2.1 ANGSTROMS TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN ORNITHINE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET WITH N-TERMINAL (HIS)6 TAG KEYWDS ALPHA-BETA BARREL, PYRIDOXAL 5'-PHOSPHATE, SHEET-DOMAIN, KEYWDS 2 DECARBOXYLATION, ORNITHINE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.ALMRUD,M.A.OLIVEIRA,A.D.KERN,N.V.GRISHIN,M.A.PHILLIPS,M.L.HACKERT REVDAT 3 31-JAN-18 1D7K 1 REMARK REVDAT 2 24-FEB-09 1D7K 1 VERSN REVDAT 1 25-OCT-00 1D7K 0 JRNL AUTH J.J.ALMRUD,M.A.OLIVEIRA,A.D.KERN,N.V.GRISHIN,M.A.PHILLIPS, JRNL AUTH 2 M.L.HACKERT JRNL TITL CRYSTAL STRUCTURE OF HUMAN ORNITHINE DECARBOXYLASE AT 2.1 A JRNL TITL 2 RESOLUTION: STRUCTURAL INSIGHTS TO ANTIZYME BINDING. JRNL REF J.MOL.BIOL. V. 295 7 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10623504 JRNL DOI 10.1006/JMBI.1999.3331 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 55799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROYGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2789 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6423 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 401 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS STRUCTURE WAS REFINED USING DATA FROM 30-2.1 ANGSTROM REMARK 3 RESOLUTION REMARK 3 USING THE CCP4 SUITE PROGRAM REFMAC. THE REFMAC REFINEMENT WAS REMARK 3 CARRIED OUT USING THE MAXIMUM LIKELIHOOD FUNCTION AND MINIMIZATION REMARK 3 BY REMARK 3 THE CONJUGATE DIRECTION METHOD. REMARK 4 REMARK 4 1D7K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1000009862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53656 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.36300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M NACL, 5MM DTT, 0.1M REMARK 280 TRIS-HCL, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 16K, TEMPERATURE REMARK 280 289.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.84000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.85500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.85500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.84000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 302 REMARK 465 SER A 303 REMARK 465 ASP A 304 REMARK 465 ASP A 305 REMARK 465 GLU A 306 REMARK 465 ASP A 307 REMARK 465 GLU A 308 REMARK 465 SER A 309 REMARK 465 SER A 310 REMARK 465 THR B 301 REMARK 465 GLY B 302 REMARK 465 SER B 303 REMARK 465 ASP B 304 REMARK 465 ASP B 305 REMARK 465 GLU B 306 REMARK 465 ASP B 307 REMARK 465 GLU B 308 REMARK 465 ASN B 422 REMARK 465 PRO B 423 REMARK 465 ASP B 424 REMARK 465 PHE B 425 REMARK 465 PRO B 426 REMARK 465 PRO B 427 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 34 OG REMARK 470 LEU A 363 CG CD1 CD2 REMARK 470 GLU B 30 CD OE1 OE2 REMARK 470 SER B 33 OG REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 ASP B 158 CG OD1 OD2 REMARK 470 SER B 160 CB OG REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 SER B 267 OG REMARK 470 GLU B 299 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 15 O GLU A 16 1.71 REMARK 500 O HOH B 434 O HOH B 594 2.01 REMARK 500 O HOH A 432 O HOH B 593 2.12 REMARK 500 O HOH B 506 O HOH B 594 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 10 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 PHE A 18 C - N - CA ANGL. DEV. = 19.1 DEGREES REMARK 500 ASP A 47 CB - CG - OD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 61 CD - NE - CZ ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 61 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP A 88 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 TYR A 110 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 THR A 132 N - CA - CB ANGL. DEV. = -16.0 DEGREES REMARK 500 THR A 132 OG1 - CB - CG2 ANGL. DEV. = 15.9 DEGREES REMARK 500 MET A 140 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 ALA A 143 O - C - N ANGL. DEV. = -11.3 DEGREES REMARK 500 ARG A 144 CD - NE - CZ ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 154 NH1 - CZ - NH2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 154 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 165 CG - CD - NE ANGL. DEV. = 13.5 DEGREES REMARK 500 CYS A 202 CA - CB - SG ANGL. DEV. = 17.9 DEGREES REMARK 500 PHE A 208 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 216 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 MET A 221 CA - CB - CG ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP A 233 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 270 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 277 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 277 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 GLU A 299 CA - CB - CG ANGL. DEV. = 18.7 DEGREES REMARK 500 ARG A 365 CD - NE - CZ ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG A 365 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 371 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 MET A 381 CA - CB - CG ANGL. DEV. = 11.2 DEGREES REMARK 500 GLN A 421 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 PHE A 425 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 PHE A 425 CB - CG - CD1 ANGL. DEV. = 9.2 DEGREES REMARK 500 PHE A 425 CG - CD2 - CE2 ANGL. DEV. = 6.7 DEGREES REMARK 500 PRO A 426 C - N - CA ANGL. DEV. = 13.1 DEGREES REMARK 500 PRO A 426 N - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 ASP B 10 N - CA - CB ANGL. DEV. = 11.6 DEGREES REMARK 500 ASP B 10 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 GLU B 16 CA - C - N ANGL. DEV. = 16.3 DEGREES REMARK 500 GLU B 16 O - C - N ANGL. DEV. = -11.4 DEGREES REMARK 500 LYS B 27 CD - CE - NZ ANGL. DEV. = 14.9 DEGREES REMARK 500 ILE B 28 CA - CB - CG2 ANGL. DEV. = 17.0 DEGREES REMARK 500 VAL B 31 CA - C - O ANGL. DEV. = 12.6 DEGREES REMARK 500 SER B 34 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 ASP B 35 N - CA - CB ANGL. DEV. = 12.5 DEGREES REMARK 500 ASP B 35 OD1 - CG - OD2 ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP B 35 CB - CG - OD1 ANGL. DEV. = 15.5 DEGREES REMARK 500 ASP B 38 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 47 CB - CG - OD2 ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 78 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 8 -44.64 -137.54 REMARK 500 PHE A 9 172.67 -55.33 REMARK 500 GLU A 16 -109.98 -42.36 REMARK 500 SER A 32 -23.78 -158.04 REMARK 500 SER A 34 83.58 34.47 REMARK 500 ASP A 35 -86.48 -74.54 REMARK 500 ASN A 71 102.26 -179.74 REMARK 500 ASP A 134 14.04 -147.67 REMARK 500 HIS A 146 61.97 -157.95 REMARK 500 ALA A 149 152.61 -49.37 REMARK 500 SER A 160 153.49 -19.14 REMARK 500 LYS A 161 -169.96 -124.70 REMARK 500 ALA A 162 -67.22 -101.35 REMARK 500 CYS A 202 119.44 -30.51 REMARK 500 ASP A 243 50.95 -98.55 REMARK 500 LEU A 297 -89.64 -79.06 REMARK 500 GLU A 299 115.46 98.06 REMARK 500 GLN A 312 -42.89 -17.61 REMARK 500 ASN A 319 39.84 -93.31 REMARK 500 PRO A 344 -168.76 -45.46 REMARK 500 PRO A 346 98.01 -40.23 REMARK 500 ASP A 347 64.56 70.09 REMARK 500 ARG A 349 112.56 80.66 REMARK 500 CYS A 360 30.92 -57.79 REMARK 500 GLU A 374 124.81 -36.85 REMARK 500 VAL A 377 134.01 -34.89 REMARK 500 THR A 390 -84.42 -122.92 REMARK 500 PRO A 423 -99.01 -60.26 REMARK 500 ASP A 424 70.73 67.96 REMARK 500 PHE A 425 -75.41 -176.26 REMARK 500 PRO A 426 -85.49 3.43 REMARK 500 SER B 34 88.36 -167.37 REMARK 500 ASP B 35 -97.63 -34.64 REMARK 500 ASP B 36 74.20 14.75 REMARK 500 LYS B 37 44.93 -105.94 REMARK 500 ASN B 71 99.11 -169.64 REMARK 500 ALA B 82 2.98 -69.77 REMARK 500 PRO B 105 -57.12 -17.02 REMARK 500 ALA B 111 51.12 -102.35 REMARK 500 ASP B 134 15.65 -159.57 REMARK 500 THR B 157 -155.25 -108.90 REMARK 500 ASP B 158 -124.45 -145.03 REMARK 500 ASP B 159 63.82 61.49 REMARK 500 SER B 160 137.60 78.72 REMARK 500 CYS B 164 108.56 -36.25 REMARK 500 SER B 167 114.16 74.07 REMARK 500 THR B 173 161.07 -27.18 REMARK 500 ASP B 243 39.68 -83.64 REMARK 500 VAL B 269 142.59 -28.84 REMARK 500 GLU B 299 100.14 97.13 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 7 GLU A 8 149.24 REMARK 500 GLU A 16 GLY A 17 -148.01 REMARK 500 GLN A 26 LYS A 27 -146.44 REMARK 500 ASP A 35 ASP A 36 -149.47 REMARK 500 ASP A 158 ASP A 159 -117.43 REMARK 500 SER A 160 LYS A 161 -114.58 REMARK 500 LYS A 161 ALA A 162 137.64 REMARK 500 ARG A 165 LEU A 166 -143.73 REMARK 500 GLY A 201 CYS A 202 143.98 REMARK 500 LEU A 297 LYS A 298 -145.26 REMARK 500 LYS A 342 ARG A 343 -144.53 REMARK 500 ARG A 343 PRO A 344 -143.51 REMARK 500 GLN A 421 ASN A 422 -128.31 REMARK 500 ASN A 422 PRO A 423 134.32 REMARK 500 ASP A 424 PHE A 425 120.79 REMARK 500 PHE A 425 PRO A 426 -138.65 REMARK 500 SER B 34 ASP B 35 -120.27 REMARK 500 LEU B 101 GLY B 102 149.38 REMARK 500 SER B 160 LYS B 161 147.36 REMARK 500 CYS B 164 ARG B 165 148.15 REMARK 500 ARG B 165 LEU B 166 -125.73 REMARK 500 ALA B 172 THR B 173 141.09 REMARK 500 LEU B 297 LYS B 298 -123.73 REMARK 500 GLN B 341 LYS B 342 135.07 REMARK 500 LYS B 342 ARG B 343 140.47 REMARK 500 PRO B 346 ASP B 347 -98.94 REMARK 500 ASP B 347 GLU B 348 -141.44 REMARK 500 MET B 417 GLN B 418 -149.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 29 10.94 REMARK 500 LYS A 50 11.15 REMARK 500 GLN A 99 -11.85 REMARK 500 ALA A 124 -14.09 REMARK 500 ALA A 143 -10.97 REMARK 500 PHE A 208 -10.56 REMARK 500 ILE A 271 10.65 REMARK 500 GLU A 274 -10.21 REMARK 500 PRO B 104 -11.55 REMARK 500 SER B 241 -17.32 REMARK 500 ASP B 320 10.10 REMARK 500 REMARK 500 REMARK: NULL DBREF 1D7K A 7 427 UNP P11926 DCOR_HUMAN 7 427 DBREF 1D7K B 7 427 UNP P11926 DCOR_HUMAN 7 427 SEQADV 1D7K ARG A 349 UNP P11926 LYS 349 CONFLICT SEQADV 1D7K GLN A 415 UNP P11926 GLU 415 CONFLICT SEQADV 1D7K ARG B 349 UNP P11926 LYS 349 CONFLICT SEQADV 1D7K GLN B 415 UNP P11926 GLU 415 CONFLICT SEQRES 1 A 421 GLU GLU PHE ASP CYS HIS PHE LEU ASP GLU GLY PHE THR SEQRES 2 A 421 ALA LYS ASP ILE LEU ASP GLN LYS ILE ASN GLU VAL SER SEQRES 3 A 421 SER SER ASP ASP LYS ASP ALA PHE TYR VAL ALA ASP LEU SEQRES 4 A 421 GLY ASP ILE LEU LYS LYS HIS LEU ARG TRP LEU LYS ALA SEQRES 5 A 421 LEU PRO ARG VAL THR PRO PHE TYR ALA VAL LLP CYS ASN SEQRES 6 A 421 ASP SER LYS ALA ILE VAL LYS THR LEU ALA ALA THR GLY SEQRES 7 A 421 THR GLY PHE ASP CYS ALA SER LYS THR GLU ILE GLN LEU SEQRES 8 A 421 VAL GLN SER LEU GLY VAL PRO PRO GLU ARG ILE ILE TYR SEQRES 9 A 421 ALA ASN PRO CYS LYS GLN VAL SER GLN ILE LYS TYR ALA SEQRES 10 A 421 ALA ASN ASN GLY VAL GLN MET MET THR PHE ASP SER GLU SEQRES 11 A 421 VAL GLU LEU MET LYS VAL ALA ARG ALA HIS PRO LYS ALA SEQRES 12 A 421 LYS LEU VAL LEU ARG ILE ALA THR ASP ASP SER LYS ALA SEQRES 13 A 421 VAL CYS ARG LEU SER VAL LYS PHE GLY ALA THR LEU ARG SEQRES 14 A 421 THR SER ARG LEU LEU LEU GLU ARG ALA LYS GLU LEU ASN SEQRES 15 A 421 ILE ASP VAL VAL GLY VAL SER PHE HIS VAL GLY SER GLY SEQRES 16 A 421 CYS THR ASP PRO GLU THR PHE VAL GLN ALA ILE SER ASP SEQRES 17 A 421 ALA ARG CYS VAL PHE ASP MET GLY ALA GLU VAL GLY PHE SEQRES 18 A 421 SER MET TYR LEU LEU ASP ILE GLY GLY GLY PHE PRO GLY SEQRES 19 A 421 SER GLU ASP VAL LYS LEU LYS PHE GLU GLU ILE THR GLY SEQRES 20 A 421 VAL ILE ASN PRO ALA LEU ASP LYS TYR PHE PRO SER ASP SEQRES 21 A 421 SER GLY VAL ARG ILE ILE ALA GLU PRO GLY ARG TYR TYR SEQRES 22 A 421 VAL ALA SER ALA PHE THR LEU ALA VAL ASN ILE ILE ALA SEQRES 23 A 421 LYS LYS ILE VAL LEU LYS GLU GLN THR GLY SER ASP ASP SEQRES 24 A 421 GLU ASP GLU SER SER GLU GLN THR PHE MET TYR TYR VAL SEQRES 25 A 421 ASN ASP GLY VAL TYR GLY SER PHE ASN CYS ILE LEU TYR SEQRES 26 A 421 ASP HIS ALA HIS VAL LYS PRO LEU LEU GLN LYS ARG PRO SEQRES 27 A 421 LYS PRO ASP GLU ARG TYR TYR SER SER SER ILE TRP GLY SEQRES 28 A 421 PRO THR CYS ASP GLY LEU ASP ARG ILE VAL GLU ARG CYS SEQRES 29 A 421 ASP LEU PRO GLU MET HIS VAL GLY ASP TRP MET LEU PHE SEQRES 30 A 421 GLU ASN MET GLY ALA TYR THR VAL ALA ALA ALA SER THR SEQRES 31 A 421 PHE ASN GLY PHE GLN ARG PRO THR ILE TYR TYR VAL MET SEQRES 32 A 421 SER GLY PRO ALA TRP GLN LEU MET GLN GLN PHE GLN ASN SEQRES 33 A 421 PRO ASP PHE PRO PRO SEQRES 1 B 421 GLU GLU PHE ASP CYS HIS PHE LEU ASP GLU GLY PHE THR SEQRES 2 B 421 ALA LYS ASP ILE LEU ASP GLN LYS ILE ASN GLU VAL SER SEQRES 3 B 421 SER SER ASP ASP LYS ASP ALA PHE TYR VAL ALA ASP LEU SEQRES 4 B 421 GLY ASP ILE LEU LYS LYS HIS LEU ARG TRP LEU LYS ALA SEQRES 5 B 421 LEU PRO ARG VAL THR PRO PHE TYR ALA VAL LLP CYS ASN SEQRES 6 B 421 ASP SER LYS ALA ILE VAL LYS THR LEU ALA ALA THR GLY SEQRES 7 B 421 THR GLY PHE ASP CYS ALA SER LYS THR GLU ILE GLN LEU SEQRES 8 B 421 VAL GLN SER LEU GLY VAL PRO PRO GLU ARG ILE ILE TYR SEQRES 9 B 421 ALA ASN PRO CYS LYS GLN VAL SER GLN ILE LYS TYR ALA SEQRES 10 B 421 ALA ASN ASN GLY VAL GLN MET MET THR PHE ASP SER GLU SEQRES 11 B 421 VAL GLU LEU MET LYS VAL ALA ARG ALA HIS PRO LYS ALA SEQRES 12 B 421 LYS LEU VAL LEU ARG ILE ALA THR ASP ASP SER LYS ALA SEQRES 13 B 421 VAL CYS ARG LEU SER VAL LYS PHE GLY ALA THR LEU ARG SEQRES 14 B 421 THR SER ARG LEU LEU LEU GLU ARG ALA LYS GLU LEU ASN SEQRES 15 B 421 ILE ASP VAL VAL GLY VAL SER PHE HIS VAL GLY SER GLY SEQRES 16 B 421 CYS THR ASP PRO GLU THR PHE VAL GLN ALA ILE SER ASP SEQRES 17 B 421 ALA ARG CYS VAL PHE ASP MET GLY ALA GLU VAL GLY PHE SEQRES 18 B 421 SER MET TYR LEU LEU ASP ILE GLY GLY GLY PHE PRO GLY SEQRES 19 B 421 SER GLU ASP VAL LYS LEU LYS PHE GLU GLU ILE THR GLY SEQRES 20 B 421 VAL ILE ASN PRO ALA LEU ASP LYS TYR PHE PRO SER ASP SEQRES 21 B 421 SER GLY VAL ARG ILE ILE ALA GLU PRO GLY ARG TYR TYR SEQRES 22 B 421 VAL ALA SER ALA PHE THR LEU ALA VAL ASN ILE ILE ALA SEQRES 23 B 421 LYS LYS ILE VAL LEU LYS GLU GLN THR GLY SER ASP ASP SEQRES 24 B 421 GLU ASP GLU SER SER GLU GLN THR PHE MET TYR TYR VAL SEQRES 25 B 421 ASN ASP GLY VAL TYR GLY SER PHE ASN CYS ILE LEU TYR SEQRES 26 B 421 ASP HIS ALA HIS VAL LYS PRO LEU LEU GLN LYS ARG PRO SEQRES 27 B 421 LYS PRO ASP GLU ARG TYR TYR SER SER SER ILE TRP GLY SEQRES 28 B 421 PRO THR CYS ASP GLY LEU ASP ARG ILE VAL GLU ARG CYS SEQRES 29 B 421 ASP LEU PRO GLU MET HIS VAL GLY ASP TRP MET LEU PHE SEQRES 30 B 421 GLU ASN MET GLY ALA TYR THR VAL ALA ALA ALA SER THR SEQRES 31 B 421 PHE ASN GLY PHE GLN ARG PRO THR ILE TYR TYR VAL MET SEQRES 32 B 421 SER GLY PRO ALA TRP GLN LEU MET GLN GLN PHE GLN ASN SEQRES 33 B 421 PRO ASP PHE PRO PRO MODRES 1D7K LLP A 69 LYS MODRES 1D7K LLP B 69 LYS HET LLP A 69 24 HET LLP B 69 24 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HOH *401(H2 O) HELIX 1 1 THR A 19 ASN A 29 1 11 HELIX 2 2 LEU A 45 LEU A 59 1 15 HELIX 3 3 SER A 73 GLY A 84 1 12 HELIX 4 4 SER A 91 SER A 100 1 10 HELIX 5 5 PRO A 104 GLU A 106 5 3 HELIX 6 6 GLN A 116 ASN A 126 1 11 HELIX 7 7 SER A 135 HIS A 146 1 12 HELIX 8 8 THR A 173 LEU A 187 1 15 HELIX 9 9 PRO A 205 GLY A 226 1 22 HELIX 10 10 LYS A 247 PHE A 263 1 17 HELIX 11 11 PRO A 264 GLY A 268 5 5 HELIX 12 12 GLY A 276 ALA A 281 1 6 HELIX 13 13 PHE A 326 ASP A 332 1 7 HELIX 14 14 THR A 390 ALA A 394 5 5 HELIX 15 15 THR A 396 PHE A 400 5 5 HELIX 16 16 SER A 410 GLN A 421 1 12 HELIX 17 17 THR B 19 GLU B 30 1 12 HELIX 18 18 LEU B 45 LEU B 59 1 15 HELIX 19 19 SER B 73 ALA B 82 1 10 HELIX 20 20 SER B 91 SER B 100 1 10 HELIX 21 21 PRO B 104 GLU B 106 5 3 HELIX 22 22 GLN B 116 ASN B 126 1 11 HELIX 23 23 SER B 135 HIS B 146 1 12 HELIX 24 24 THR B 173 ASN B 188 1 16 HELIX 25 25 PRO B 205 GLU B 224 1 20 HELIX 26 26 LYS B 247 PHE B 263 1 17 HELIX 27 27 PRO B 264 GLY B 268 5 5 HELIX 28 28 GLY B 276 ALA B 281 1 6 HELIX 29 29 GLY B 324 PHE B 326 5 3 HELIX 30 30 ASN B 327 ASP B 332 1 6 HELIX 31 31 THR B 390 ALA B 394 5 5 HELIX 32 32 THR B 396 PHE B 400 5 5 HELIX 33 33 SER B 410 GLN B 419 1 10 SHEET 1 A 7 ARG A 365 PRO A 373 0 SHEET 2 A 7 TYR A 350 TRP A 356 -1 N TYR A 351 O LEU A 372 SHEET 3 A 7 THR A 313 VAL A 318 1 O PHE A 314 N SER A 354 SHEET 4 A 7 PHE A 284 VAL A 296 -1 N ILE A 291 O TYR A 317 SHEET 5 A 7 PHE A 40 ASP A 44 -1 O PHE A 40 N ALA A 287 SHEET 6 A 7 THR A 404 MET A 409 1 O THR A 404 N TYR A 41 SHEET 7 A 7 CYS A 11 PHE A 13 1 N HIS A 12 O TYR A 407 SHEET 1 A1 6 ARG A 365 PRO A 373 0 SHEET 2 A1 6 TYR A 350 TRP A 356 -1 N TYR A 351 O LEU A 372 SHEET 3 A1 6 THR A 313 VAL A 318 1 O PHE A 314 N SER A 354 SHEET 4 A1 6 PHE A 284 VAL A 296 -1 N ILE A 291 O TYR A 317 SHEET 5 A1 6 TRP A 380 PHE A 383 -1 N MET A 381 O VAL A 288 SHEET 6 A1 6 LEU A 339 LEU A 340 -1 O LEU A 339 N LEU A 382 SHEET 1 B 9 VAL A 62 ALA A 67 0 SHEET 2 B 9 GLY A 86 CYS A 89 1 O GLY A 86 N TYR A 66 SHEET 3 B 9 ILE A 108 TYR A 110 1 N ILE A 109 O PHE A 87 SHEET 4 B 9 MET A 130 PHE A 133 1 O MET A 130 N TYR A 110 SHEET 5 B 9 LYS A 150 ARG A 154 1 O LYS A 150 N MET A 131 SHEET 6 B 9 ASP A 190 SER A 195 1 O ASP A 190 N LEU A 151 SHEET 7 B 9 LEU A 231 ASP A 233 1 N LEU A 231 O VAL A 192 SHEET 8 B 9 ARG A 270 ALA A 273 1 O ARG A 270 N LEU A 232 SHEET 9 B 9 VAL A 62 ALA A 67 1 N THR A 63 O ILE A 271 SHEET 1 C 7 ARG B 365 PRO B 373 0 SHEET 2 C 7 TYR B 350 TRP B 356 -1 N TYR B 351 O LEU B 372 SHEET 3 C 7 THR B 313 VAL B 318 1 O PHE B 314 N SER B 354 SHEET 4 C 7 PHE B 284 VAL B 296 -1 N ILE B 291 O TYR B 317 SHEET 5 C 7 PHE B 40 ASP B 44 -1 O PHE B 40 N ALA B 287 SHEET 6 C 7 THR B 404 MET B 409 1 O THR B 404 N TYR B 41 SHEET 7 C 7 HIS B 12 PHE B 13 1 N HIS B 12 O TYR B 407 SHEET 1 C1 6 ARG B 365 PRO B 373 0 SHEET 2 C1 6 TYR B 350 TRP B 356 -1 N TYR B 351 O LEU B 372 SHEET 3 C1 6 THR B 313 VAL B 318 1 O PHE B 314 N SER B 354 SHEET 4 C1 6 PHE B 284 VAL B 296 -1 N ILE B 291 O TYR B 317 SHEET 5 C1 6 TRP B 380 PHE B 383 -1 N MET B 381 O VAL B 288 SHEET 6 C1 6 LEU B 339 LEU B 340 -1 O LEU B 339 N LEU B 382 SHEET 1 D 9 THR B 63 ALA B 67 0 SHEET 2 D 9 GLY B 86 CYS B 89 1 N GLY B 86 O PRO B 64 SHEET 3 D 9 ILE B 108 TYR B 110 1 O ILE B 109 N CYS B 89 SHEET 4 D 9 MET B 130 PHE B 133 1 O MET B 130 N TYR B 110 SHEET 5 D 9 LYS B 150 ARG B 154 1 O LYS B 150 N MET B 131 SHEET 6 D 9 VAL B 191 SER B 195 1 N VAL B 192 O LEU B 151 SHEET 7 D 9 LEU B 231 ASP B 233 1 N LEU B 231 O VAL B 192 SHEET 8 D 9 ARG B 270 ALA B 273 1 O ARG B 270 N LEU B 232 SHEET 9 D 9 THR B 63 ALA B 67 1 N THR B 63 O ILE B 271 LINK C VAL A 68 N LLP A 69 1555 1555 1.35 LINK C LLP A 69 N CYS A 70 1555 1555 1.34 LINK C VAL B 68 N LLP B 69 1555 1555 1.33 LINK C LLP B 69 N CYS B 70 1555 1555 1.34 CRYST1 61.680 107.450 139.710 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016213 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009307 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007158 0.00000