PDB Short entry for 1D8J
HEADER    GENE REGULATION                         25-OCT-99   1D8J              
TITLE     SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA           
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: GENERAL TRANSCRIPTION FACTOR TFIIE-BETA;                   
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: CENTRAL CORE DOMAIN;                                       
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: PET3A                                     
KEYWDS    WINGED HELIX-TURN-HELIX, RIKEN STRUCTURAL                             
KEYWDS   2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS,           
KEYWDS   3 GENE REGULATION                                                      
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    M.OKUDA,Y.WATANABE,H.OKAMURA,F.HANAOKA,Y.OHKUMA,Y.NISHIMURA,          
AUTHOR   2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)               
REVDAT   2   24-FEB-09 1D8J    1       VERSN                                    
REVDAT   1   26-APR-00 1D8J    0                                                
JRNL        AUTH   M.OKUDA,Y.WATANABE,H.OKAMURA,F.HANAOKA,Y.OHKUMA,             
JRNL        AUTH 2 Y.NISHIMURA                                                  
JRNL        TITL   STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIEBETA            
JRNL        TITL 2 WITH A NOVEL DOUBLE-STRANDED DNA-BINDING SURFACE.            
JRNL        REF    EMBO J.                       V.  19  1346 2000              
JRNL        REFN                   ISSN 0261-4189                               
JRNL        PMID   10716934                                                     
JRNL        DOI    10.1093/EMBOJ/19.6.1346                                      
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : EMBOSS 5                                             
REMARK   3   AUTHORS     : NAKAI, KIDERA, NAKAMURA                              
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL       
REMARK   3  OF 1224 RESTRAINTS, 1184 ARE NOE-DERIVED DISTANCE CONSTRAINTS,      
REMARK   3  38 DIHEDRAL ANGLE RESTRAINTS, 40 DISTANCE RESTRAINTS FROM           
REMARK   3  HYDROGEN BONDS.                                                     
REMARK   4                                                                      
REMARK   4 1D8J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-99.                  
REMARK 100 THE RCSB ID CODE IS RCSB009887.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 300                                
REMARK 210  PH                             : 6.0                                
REMARK 210  IONIC STRENGTH                 : 500MM NACL                         
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1-2MM PROTEIN U-15N,13C; 20MM      
REMARK 210                                   PHOSPHATE BUFFER, 500MM NACL;      
REMARK 210                                   1-2MM PROTEIN ; 20MM PHOSPHATE     
REMARK 210                                   BUFFER, 500MM NACL                 
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D NOESY, 3D_13C-SEPARATED_        
REMARK 210                                   NOESY, 3D_15N-SEPARATED_NOESY,     
REMARK 210                                   4D_13C-SEPARATED_NOESY, HNHA,      
REMARK 210                                   HMQC-J                             
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ, 500 MHZ                   
REMARK 210  SPECTROMETER MODEL             : DMX, AMX                           
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 1.6, PIPP, CAPP,           
REMARK 210                                   STAPP 3.9, EMBOSS 5                
REMARK 210   METHOD USED                   : 4D SIMULATED ANNEALING             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20                  
REMARK 210                                                                      
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR      
REMARK 210  SPECTROSCOPY.                                                       
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 LYS A   9      -59.90     74.93                                   
REMARK 500  1 ILE A  46     -105.72     26.28                                   
REMARK 500  1 GLU A  57      -67.39   -165.45                                   
REMARK 500  1 LEU A  59       27.93    -79.71                                   
REMARK 500  1 VAL A  60      -38.80   -134.88                                   
REMARK 500  1 ILE A  68      -98.66   -115.96                                   
REMARK 500  1 TYR A  78       49.22     36.15                                   
REMARK 500  1 ASN A  79      -49.69   -164.60                                   
REMARK 500  2 LEU A   2      -64.79   -155.68                                   
REMARK 500  2 SER A   5     -173.10     61.26                                   
REMARK 500  2 LYS A   9      -47.36     82.62                                   
REMARK 500  2 ASP A  28       46.38    -82.06                                   
REMARK 500  2 GLN A  42       72.71    -26.47                                   
REMARK 500  2 HIS A  43       58.12   -178.58                                   
REMARK 500  2 ASP A  45      -45.06   -162.21                                   
REMARK 500  2 ILE A  46      -89.57     40.88                                   
REMARK 500  2 GLU A  57      -54.21   -138.84                                   
REMARK 500  2 LYS A  77      -72.25     71.60                                   
REMARK 500  2 TYR A  78       46.28   -146.02                                   
REMARK 500  3 LYS A   9      -47.87   -166.34                                   
REMARK 500  3 ARG A  26      -51.71   -163.87                                   
REMARK 500  3 LEU A  44      -52.59    166.26                                   
REMARK 500  3 GLU A  57      -68.89   -160.32                                   
REMARK 500  3 ASN A  61       58.35   -101.78                                   
REMARK 500  3 ILE A  68      -96.65   -131.79                                   
REMARK 500  3 LYS A  77     -103.56     55.73                                   
REMARK 500  3 ASN A  79      173.76     73.99                                   
REMARK 500  4 SER A   3      -36.58   -153.82                                   
REMARK 500  4 SER A   6       34.23    -83.79                                   
REMARK 500  4 TYR A   8     -126.81     51.95                                   
REMARK 500  4 ASP A  28       53.96   -140.46                                   
REMARK 500  4 ASP A  45      -40.65   -163.54                                   
REMARK 500  4 ILE A  46      -88.30     18.18                                   
REMARK 500  4 GLU A  57      -66.86   -162.29                                   
REMARK 500  4 VAL A  60      -41.78   -133.22                                   
REMARK 500  5 LEU A   2      -81.73     62.08                                   
REMARK 500  5 SER A   5       81.04     56.92                                   
REMARK 500  5 LYS A   9      -67.88     69.56                                   
REMARK 500  5 GLU A  57      -74.43   -138.77                                   
REMARK 500  5 ASN A  61      -15.78   -145.81                                   
REMARK 500  5 ILE A  68     -108.09   -116.94                                   
REMARK 500  5 PRO A  76      -81.86    -73.65                                   
REMARK 500  5 LYS A  77       41.10   -161.42                                   
REMARK 500  5 ASN A  79      105.39   -167.52                                   
REMARK 500  6 LYS A   9      -47.68    175.27                                   
REMARK 500  6 ARG A  26      -47.09   -136.81                                   
REMARK 500  6 ILE A  46     -102.46     22.47                                   
REMARK 500  6 GLU A  57      -55.16   -167.58                                   
REMARK 500  6 LYS A  77      -44.47   -164.35                                   
REMARK 500  6 TYR A  78      -64.24   -147.08                                   
REMARK 500  6 ASN A  79       80.39     57.61                                   
REMARK 500  7 LEU A   2     -155.46     61.56                                   
REMARK 500  7 LYS A   9      -64.89     75.42                                   
REMARK 500  7 GLN A  42      -11.95     68.83                                   
REMARK 500  7 HIS A  43       35.51    -77.35                                   
REMARK 500  7 ASP A  45       37.82    -86.30                                   
REMARK 500  7 GLU A  57      -49.89   -160.93                                   
REMARK 500  7 ALA A  58      -76.82    -81.93                                   
REMARK 500  7 ASN A  61       26.57   -147.50                                   
REMARK 500  7 ILE A  68     -112.78   -127.71                                   
REMARK 500  7 ASN A  79       47.35   -154.98                                   
REMARK 500  8 LEU A   2       29.66   -150.35                                   
REMARK 500  8 SER A   3       52.29   -161.33                                   
REMARK 500  8 LYS A   9      -61.80     74.20                                   
REMARK 500  8 ARG A  26      -59.29   -165.53                                   
REMARK 500  8 GLN A  42       86.41    -32.60                                   
REMARK 500  8 HIS A  43       29.27   -140.60                                   
REMARK 500  8 GLU A  57      -67.29   -166.95                                   
REMARK 500  8 LEU A  59       37.45    -80.27                                   
REMARK 500  8 ASP A  69       77.60   -160.32                                   
REMARK 500  8 TYR A  78     -109.65     57.52                                   
REMARK 500  8 ASN A  79      163.48     64.95                                   
REMARK 500  9 SER A   5      135.56     71.55                                   
REMARK 500  9 SER A   6      -55.05   -158.28                                   
REMARK 500  9 LYS A   9      -61.58   -151.44                                   
REMARK 500  9 GLN A  42      -88.84     73.68                                   
REMARK 500  9 HIS A  43     -109.60     31.82                                   
REMARK 500  9 LEU A  44      -64.71     69.36                                   
REMARK 500  9 ILE A  46      137.78     47.51                                   
REMARK 500  9 GLU A  57      -65.65   -170.50                                   
REMARK 500  9 ASN A  61       -9.34     69.17                                   
REMARK 500  9 ASP A  69       19.90     59.16                                   
REMARK 500  9 LYS A  77      -51.95   -157.50                                   
REMARK 500  9 TYR A  78      -52.40   -171.82                                   
REMARK 500 10 LEU A   2       28.29   -149.92                                   
REMARK 500 10 TYR A   8      124.31     66.25                                   
REMARK 500 10 LYS A   9      -74.66     65.10                                   
REMARK 500 10 GLN A  42      -10.52     69.04                                   
REMARK 500 10 HIS A  43       39.15    -78.06                                   
REMARK 500 10 GLU A  57      -56.19   -167.75                                   
REMARK 500 10 ILE A  68      -95.90   -120.87                                   
REMARK 500 10 PRO A  76     -172.50    -67.02                                   
REMARK 500 10 TYR A  78      -49.31   -163.02                                   
REMARK 500 11 SER A   3       60.04   -152.51                                   
REMARK 500 11 SER A   6       54.32   -140.48                                   
REMARK 500 11 TYR A   8       15.82     50.71                                   
REMARK 500 11 LYS A   9      -42.75   -169.34                                   
REMARK 500 11 GLN A  42      -61.00     75.63                                   
REMARK 500 11 ILE A  46     -134.37     55.63                                   
REMARK 500 11 GLU A  57      -66.77   -165.72                                   
REMARK 500 11 LEU A  59       31.70    -81.46                                   
REMARK 500 11 VAL A  60      -40.38   -134.41                                   
REMARK 500 11 ILE A  68      -60.80   -104.06                                   
REMARK 500 11 ASP A  69       76.23   -152.45                                   
REMARK 500 11 ASN A  79      -49.26   -165.79                                   
REMARK 500 12 SER A   3      -62.24   -153.22                                   
REMARK 500 12 SER A   6       56.30   -150.35                                   
REMARK 500 12 TYR A   8     -122.43   -114.38                                   
REMARK 500 12 GLN A  42       84.40    -36.92                                   
REMARK 500 12 HIS A  43       45.10   -140.04                                   
REMARK 500 12 ILE A  46      -98.42     22.85                                   
REMARK 500 12 GLU A  57      -72.68   -102.00                                   
REMARK 500 12 LEU A  59       31.90    -80.39                                   
REMARK 500 12 VAL A  60      -47.68   -134.47                                   
REMARK 500 13 SER A   3      -57.44     75.01                                   
REMARK 500 13 LYS A   9      -69.97     69.12                                   
REMARK 500 13 ARG A  26       38.99    -95.17                                   
REMARK 500 13 ASP A  28       41.76    -82.30                                   
REMARK 500 13 ASP A  45       41.22    -83.90                                   
REMARK 500 13 GLU A  57      -70.33   -168.38                                   
REMARK 500 13 LEU A  59       28.59    -79.10                                   
REMARK 500 13 LYS A  64       36.52    -99.00                                   
REMARK 500 13 ASN A  79      143.78     70.22                                   
REMARK 500 14 SER A   3       35.91   -153.05                                   
REMARK 500 14 LYS A   9      -65.82     74.19                                   
REMARK 500 14 GLN A  42     -111.27     67.54                                   
REMARK 500 14 HIS A  43     -116.30     46.71                                   
REMARK 500 14 LEU A  44      -55.40     78.44                                   
REMARK 500 14 ILE A  46      -74.11     66.39                                   
REMARK 500 14 GLU A  57      -67.91   -152.46                                   
REMARK 500 14 LYS A  77       52.21   -160.68                                   
REMARK 500 14 VAL A  80      135.72     69.49                                   
REMARK 500 15 SER A   3       76.78   -153.16                                   
REMARK 500 15 LYS A   9      -47.40   -154.90                                   
REMARK 500 15 GLN A  25       43.37    -82.41                                   
REMARK 500 15 ARG A  26      -51.43   -158.60                                   
REMARK 500 15 GLU A  57      -61.88   -172.77                                   
REMARK 500 15 ILE A  68     -114.07   -115.80                                   
REMARK 500 15 LYS A  77      128.26     70.76                                   
REMARK 500 16 SER A   3       75.26   -162.43                                   
REMARK 500 16 SER A   5     -168.76     64.17                                   
REMARK 500 16 TYR A   8       38.01   -153.31                                   
REMARK 500 16 LYS A   9      -51.04   -173.50                                   
REMARK 500 16 ARG A  26      -50.13   -154.45                                   
REMARK 500 16 TYR A  78      -61.13   -156.27                                   
REMARK 500 16 ASN A  79      -67.68     70.25                                   
REMARK 500 17 SER A   6     -128.78    -83.52                                   
REMARK 500 17 TYR A   8      142.00     69.02                                   
REMARK 500 17 LYS A   9      -45.69     74.47                                   
REMARK 500 17 ASP A  45       38.72    -87.22                                   
REMARK 500 17 GLU A  57      -70.77   -166.79                                   
REMARK 500 17 ALA A  58      -80.09    -57.45                                   
REMARK 500 17 ASN A  61       54.57   -145.66                                   
REMARK 500 18 LYS A   9      -67.20     72.99                                   
REMARK 500 18 GLN A  25       48.74    -83.82                                   
REMARK 500 18 ARG A  26      -50.14   -162.79                                   
REMARK 500 18 GLN A  42      -15.37     72.45                                   
REMARK 500 18 HIS A  43       42.73    -78.18                                   
REMARK 500 18 ILE A  46     -132.07     34.74                                   
REMARK 500 18 GLU A  57      -49.09   -132.90                                   
REMARK 500 18 VAL A  60      -93.46    -73.83                                   
REMARK 500 18 ASN A  79     -155.31     61.42                                   
REMARK 500 19 LEU A   2      -68.06     73.32                                   
REMARK 500 19 SER A   5       52.14   -163.99                                   
REMARK 500 19 TYR A   8      145.13     66.48                                   
REMARK 500 19 LYS A   9      -48.71     77.68                                   
REMARK 500 19 ASP A  45       42.53    -84.59                                   
REMARK 500 19 GLU A  57      -66.11   -165.75                                   
REMARK 500 19 ASN A  61       66.02   -102.26                                   
REMARK 500 19 ILE A  68     -120.97   -112.59                                   
REMARK 500 19 LYS A  77      -80.35   -166.36                                   
REMARK 500 20 SER A   5     -131.95     46.15                                   
REMARK 500 20 LYS A   9      -65.18     72.51                                   
REMARK 500 20 GLN A  42      -58.51     74.44                                   
REMARK 500 20 HIS A  43       77.75    -69.76                                   
REMARK 500 20 ILE A  46      -70.48     50.26                                   
REMARK 500 20 GLU A  57      -75.17   -168.17                                   
REMARK 500 20 ILE A  68     -125.15   -126.52                                   
REMARK 500 20 LYS A  77     -173.41     71.22                                   
REMARK 500 20 TYR A  78       32.73   -164.20                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500  4 ARG A  23         0.08    SIDE_CHAIN                              
REMARK 500  8 ARG A  23         0.09    SIDE_CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1D8K   RELATED DB: PDB                                   
REMARK 900 RELATED ID: TRT001000205.1   RELATED DB: TARGETDB                    
DBREF  1D8J A    1    81  UNP    P29084   T2EB_HUMAN      66    146             
SEQRES   1 A   81  ALA LEU SER GLY SER SER GLY TYR LYS PHE GLY VAL LEU          
SEQRES   2 A   81  ALA LYS ILE VAL ASN TYR MET LYS THR ARG HIS GLN ARG          
SEQRES   3 A   81  GLY ASP THR HIS PRO LEU THR LEU ASP GLU ILE LEU ASP          
SEQRES   4 A   81  GLU THR GLN HIS LEU ASP ILE GLY LEU LYS GLN LYS GLN          
SEQRES   5 A   81  TRP LEU MET THR GLU ALA LEU VAL ASN ASN PRO LYS ILE          
SEQRES   6 A   81  GLU VAL ILE ASP GLY LYS TYR ALA PHE LYS PRO LYS TYR          
SEQRES   7 A   81  ASN VAL ARG                                                  
HELIX    1   1 PHE A   10  GLN A   25  1                                  16    
HELIX    2   2 LEU A   34  GLU A   40  1                                   7    
HELIX    3   3 LEU A   48  MET A   55  1                                   8    
SHEET    1   A 3 LEU A  32  LEU A  32  0                                        
SHEET    2   A 3 ILE A  65  ILE A  68  0                                        
SHEET    3   A 3 LYS A  71  PHE A  74  0                                        
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000