PDB Short entry for 1D9Z HEADER GENE REGULATION 30-OCT-99 1D9Z TITLE CRYSTAL STRUCTURE OF THE DNA REPAIR PROTEIN UVRB IN COMPLEX WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXCINUCLEASE UVRABC COMPONENT UVRB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CALDOTENAX; SOURCE 3 ORGANISM_TAXID: 1395; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PTYB1 KEYWDS ATP-BOUND PROTEIN, EXCINUCLEASE, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR K.THEIS,P.J.CHEN,M.SKORVAGA,B.VAN HOUTEN,C.KISKER REVDAT 5 07-FEB-24 1D9Z 1 REMARK SHEET LINK REVDAT 4 04-OCT-17 1D9Z 1 REMARK REVDAT 3 24-FEB-09 1D9Z 1 VERSN REVDAT 2 01-APR-03 1D9Z 1 JRNL REVDAT 1 03-MAY-00 1D9Z 0 JRNL AUTH K.THEIS,P.J.CHEN,M.SKORVAGA,B.VAN HOUTEN,C.KISKER JRNL TITL CRYSTAL STRUCTURE OF UVRB, A DNA HELICASE ADAPTED FOR JRNL TITL 2 NUCLEOTIDE EXCISION REPAIR. JRNL REF EMBO J. V. 18 6899 1999 JRNL REFN ISSN 0261-4189 JRNL PMID 10601012 JRNL DOI 10.1093/EMBOJ/18.24.6899 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.ZOU,B.VAN HOUTEN REMARK 1 TITL STRAND OPENING BY THE UVRA2B COMPLEX ALLOWS DYNAMIC REMARK 1 TITL 2 RECOGNITION OF DNA DAMAGE REMARK 1 REF EMBO J. V. 18 4889 1999 REMARK 1 REFN ISSN 0261-4189 REMARK 1 DOI 10.1093/EMBOJ/18.17.4889 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -1000. REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 954 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4632 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MAXIMUM LIKELYHOOD REMARK 4 REMARK 4 1D9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-99. REMARK 100 THE DEPOSITION ID IS D_1000009929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-99 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19075 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: DIFFERENCE FOURIER (CCP4) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 MG/ML UVRB, 500 MM NACL, 14-18% PEG REMARK 280 6000, 10 MM ZNCL2, 100 MM BICINE PH 9, PH 9.0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 295K. 5 MM ATP 5 MM MGCL2 500 MM NACL, 14-18% PEG REMARK 280 6000, 10 MM ZNCL2, 100 MM BICINE PH 9, PH 9.0, SOAKING, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.91367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.82733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.82733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.91367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ASP A 187 REMARK 465 ARG A 223 REMARK 465 ILE A 224 REMARK 465 ILE A 596 REMARK 465 ARG A 597 REMARK 465 ALA A 598 REMARK 465 THR A 599 REMARK 465 TYR A 600 REMARK 465 ALA A 601 REMARK 465 ALA A 602 REMARK 465 GLU A 603 REMARK 465 GLU A 604 REMARK 465 THR A 605 REMARK 465 GLU A 606 REMARK 465 MET A 607 REMARK 465 TYR A 608 REMARK 465 GLU A 609 REMARK 465 ALA A 610 REMARK 465 LYS A 611 REMARK 465 PRO A 612 REMARK 465 ALA A 613 REMARK 465 ALA A 614 REMARK 465 ALA A 615 REMARK 465 MET A 616 REMARK 465 THR A 617 REMARK 465 LYS A 618 REMARK 465 GLN A 619 REMARK 465 GLU A 620 REMARK 465 ARG A 621 REMARK 465 GLU A 622 REMARK 465 GLU A 623 REMARK 465 LEU A 624 REMARK 465 ILE A 625 REMARK 465 ARG A 626 REMARK 465 THR A 627 REMARK 465 LEU A 628 REMARK 465 GLU A 629 REMARK 465 ALA A 630 REMARK 465 GLU A 631 REMARK 465 MET A 632 REMARK 465 LYS A 633 REMARK 465 GLU A 634 REMARK 465 ALA A 635 REMARK 465 ALA A 636 REMARK 465 LYS A 637 REMARK 465 ALA A 638 REMARK 465 LEU A 639 REMARK 465 ASP A 640 REMARK 465 PHE A 641 REMARK 465 GLU A 642 REMARK 465 ARG A 643 REMARK 465 ALA A 644 REMARK 465 ALA A 645 REMARK 465 GLN A 646 REMARK 465 LEU A 647 REMARK 465 ARG A 648 REMARK 465 ASP A 649 REMARK 465 ILE A 650 REMARK 465 ILE A 651 REMARK 465 PHE A 652 REMARK 465 GLU A 653 REMARK 465 LEU A 654 REMARK 465 LYS A 655 REMARK 465 ALA A 656 REMARK 465 GLU A 657 REMARK 465 GLY A 658 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 ASP A 182 CG OD1 OD2 REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 184 CG OD1 ND2 REMARK 470 ASP A 185 CG OD1 OD2 REMARK 470 ILE A 186 CG1 CG2 CD1 REMARK 470 PHE A 188 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 THR A 191 OG1 CG2 REMARK 470 PHE A 192 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 194 CG1 CG2 REMARK 470 ARG A 195 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 197 CG OD1 OD2 REMARK 470 VAL A 198 CG1 CG2 REMARK 470 VAL A 199 CG1 CG2 REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 470 PHE A 202 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO A 203 CG CD REMARK 470 SER A 205 OG REMARK 470 HIS A 209 CG ND1 CD2 CE1 NE2 REMARK 470 CYS A 210 SG REMARK 470 ILE A 211 CG1 CG2 CD1 REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 213 CG1 CG2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 PHE A 215 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 216 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 218 CG OD1 OD2 REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 ILE A 220 CG1 CG2 CD1 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 203 N - CA - CB ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG A 206 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 270 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 285 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 311 NH1 - CZ - NH2 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 311 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 348 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 348 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 413 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 413 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 423 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 PRO A 426 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 441 NH1 - CZ - NH2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 441 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 TYR A 474 CG - CD1 - CE1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 492 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 506 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 529 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 570 NH1 - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 570 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 133.59 166.88 REMARK 500 TYR A 11 -150.21 -70.41 REMARK 500 PRO A 13 109.18 -56.95 REMARK 500 GLN A 14 -136.25 -97.22 REMARK 500 ALA A 20 -76.66 -60.85 REMARK 500 ILE A 21 -87.56 -26.17 REMARK 500 ALA A 22 -31.02 -39.45 REMARK 500 VAL A 25 -72.95 -40.09 REMARK 500 ARG A 30 10.01 -60.77 REMARK 500 ASN A 57 74.61 29.31 REMARK 500 TYR A 74 -81.19 -53.30 REMARK 500 VAL A 90 -169.52 -127.51 REMARK 500 TYR A 92 35.05 -79.86 REMARK 500 ASP A 94 42.43 -85.66 REMARK 500 TYR A 95 -93.99 179.05 REMARK 500 TYR A 96 -170.99 -54.48 REMARK 500 GLU A 99 83.92 1.95 REMARK 500 THR A 105 10.93 -69.70 REMARK 500 ASP A 106 61.65 27.44 REMARK 500 LYS A 111 74.76 -68.06 REMARK 500 ASP A 117 -50.79 1.24 REMARK 500 ILE A 119 -77.67 -45.29 REMARK 500 GLU A 132 -64.28 -106.57 REMARK 500 ASP A 135 70.26 -106.77 REMARK 500 SER A 143 -13.11 -45.90 REMARK 500 GLU A 153 42.33 -78.96 REMARK 500 TYR A 154 -40.72 -148.18 REMARK 500 GLU A 168 166.46 -46.60 REMARK 500 GLN A 180 72.24 45.19 REMARK 500 TYR A 181 137.37 -20.04 REMARK 500 ARG A 183 57.71 -155.39 REMARK 500 ASP A 185 -80.16 -143.81 REMARK 500 ARG A 189 -144.42 -167.76 REMARK 500 THR A 191 -86.56 60.15 REMARK 500 ARG A 195 -79.79 68.61 REMARK 500 ASP A 197 -150.07 88.97 REMARK 500 ILE A 201 -81.29 -118.70 REMARK 500 PHE A 202 106.79 67.06 REMARK 500 PRO A 203 68.80 -100.96 REMARK 500 ALA A 204 91.79 -60.96 REMARK 500 SER A 205 -144.81 -101.38 REMARK 500 ARG A 206 84.44 -9.90 REMARK 500 GLU A 208 -40.76 52.55 REMARK 500 CYS A 210 50.96 177.62 REMARK 500 ILE A 211 21.15 -78.30 REMARK 500 ARG A 212 32.51 -83.19 REMARK 500 VAL A 213 80.04 62.85 REMARK 500 PHE A 215 101.56 27.36 REMARK 500 ILE A 220 76.30 39.70 REMARK 500 GLU A 226 106.67 -37.94 REMARK 500 REMARK 500 THIS ENTRY HAS 98 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 107 10.54 REMARK 500 GLU A 268 -11.46 REMARK 500 LYS A 279 -10.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D9X RELATED DB: PDB REMARK 900 1D9X CONTAINS THE SAME PROTEIN WITHOUT ITS COFACTOR ATP DBREF 1D9Z A 1 658 UNP P56981 UVRB_BACCA 1 657 SEQRES 1 A 657 VAL GLU GLY ARG PHE GLN LEU VAL ALA PRO TYR GLU PRO SEQRES 2 A 657 GLN GLY ASP GLN PRO GLN ALA ILE ALA LYS LEU VAL ASP SEQRES 3 A 657 GLY LEU ARG ARG GLY VAL LYS HIS GLN THR LEU LEU GLY SEQRES 4 A 657 ALA THR GLY THR GLY LYS THR PHE THR ILE SER ASN VAL SEQRES 5 A 657 ILE ALA GLN VAL ASN LYS PRO THR LEU VAL ILE ALA HIS SEQRES 6 A 657 ASN LYS THR LEU ALA GLY GLN LEU TYR SER GLU LEU LYS SEQRES 7 A 657 GLU PHE PHE PRO HIS ASN ALA VAL GLU TYR PHE VAL SER SEQRES 8 A 657 TYR TYR ASP TYR TYR GLN PRO GLU ALA TYR VAL PRO GLN SEQRES 9 A 657 THR ASP THR TYR ILE GLU LYS ASP ALA LYS ILE ASN ASP SEQRES 10 A 657 GLU ILE ASP LYS LEU ARG HIS SER ALA THR SER ALA LEU SEQRES 11 A 657 PHE GLU ARG ARG ASP VAL ILE ILE VAL ALA SER VAL SER SEQRES 12 A 657 CYS ILE TYR GLY LEU GLY SER PRO GLU GLU TYR ARG GLU SEQRES 13 A 657 LEU VAL VAL SER LEU ARG VAL GLY MET GLU ILE GLU ARG SEQRES 14 A 657 ASN ALA LEU LEU ARG ARG LEU VAL ASP ILE GLN TYR ASP SEQRES 15 A 657 ARG ASN ASP ILE ASP PHE ARG GLY THR PHE ARG VAL ARG SEQRES 16 A 657 GLY ASP VAL VAL GLU ILE PHE PRO ALA SER ARG ASP GLU SEQRES 17 A 657 HIS CYS ILE ARG VAL GLU PHE PHE GLY ASP GLU ILE GLU SEQRES 18 A 657 ARG ILE ARG GLU VAL ASP ALA LEU THR GLY LYS VAL LEU SEQRES 19 A 657 GLY GLU ARG GLU HIS VAL ALA ILE PHE PRO ALA SER HIS SEQRES 20 A 657 PHE VAL THR ARG GLU GLU LYS MET ARG LEU ALA ILE GLN SEQRES 21 A 657 ASN ILE GLU GLN GLU LEU GLU GLU ARG LEU ALA GLU LEU SEQRES 22 A 657 ARG ALA GLN GLY LYS LEU LEU GLU ALA GLN ARG LEU GLU SEQRES 23 A 657 GLN ARG THR ARG TYR ASP LEU GLU MET MET ARG GLU MET SEQRES 24 A 657 GLY PHE CYS SER GLY ILE GLU ASN TYR SER ARG HIS LEU SEQRES 25 A 657 ALA LEU ARG PRO PRO GLY SER THR PRO TYR THR LEU LEU SEQRES 26 A 657 ASP TYR PHE PRO ASP ASP PHE LEU ILE ILE VAL ASP GLU SEQRES 27 A 657 SER HIS VAL THR LEU PRO GLN LEU ARG GLY MET TYR ASN SEQRES 28 A 657 GLY ASP ARG ALA ARG LYS GLN VAL LEU VAL ASP HIS GLY SEQRES 29 A 657 PHE ARG LEU PRO SER ALA LEU ASP ASN ARG PRO LEU THR SEQRES 30 A 657 PHE GLU GLU PHE GLU GLN LYS ILE ASN GLN ILE ILE TYR SEQRES 31 A 657 VAL SER ALA THR PRO GLY PRO TYR GLU LEU GLU HIS SER SEQRES 32 A 657 PRO GLY VAL VAL GLU GLN ILE ILE ARG PRO THR GLY LEU SEQRES 33 A 657 LEU ASP PRO THR ILE ASP VAL ARG PRO THR LYS GLY GLN SEQRES 34 A 657 ILE ASP ASP LEU ILE GLY GLU ILE ARG GLU ARG VAL GLU SEQRES 35 A 657 ARG ASN GLU ARG THR LEU VAL THR THR LEU THR LYS LYS SEQRES 36 A 657 MET ALA GLU ASP LEU THR ASP TYR LEU LYS GLU ALA GLY SEQRES 37 A 657 ILE LYS VAL ALA TYR LEU HIS SER GLU ILE LYS THR LEU SEQRES 38 A 657 GLU ARG ILE GLU ILE ILE ARG ASP LEU ARG LEU GLY LYS SEQRES 39 A 657 TYR ASP VAL LEU VAL GLY ILE ASN LEU LEU ARG GLU GLY SEQRES 40 A 657 LEU ASP ILE PRO GLU VAL SER LEU VAL ALA ILE LEU ASP SEQRES 41 A 657 ALA ASP LYS GLU GLY PHE LEU ARG SER GLU ARG SER LEU SEQRES 42 A 657 ILE GLN THR ILE GLY ARG ALA ALA ARG ASN ALA ASN GLY SEQRES 43 A 657 HIS VAL ILE MET TYR ALA ASP THR ILE THR LYS SER MET SEQRES 44 A 657 GLU ILE ALA ILE GLN GLU THR LYS ARG ARG ARG ALA ILE SEQRES 45 A 657 GLN GLU GLU TYR ASN ARG LYS HIS GLY ILE VAL PRO ARG SEQRES 46 A 657 THR VAL LYS LYS GLU ILE ARG ASP VAL ILE ARG ALA THR SEQRES 47 A 657 TYR ALA ALA GLU GLU THR GLU MET TYR GLU ALA LYS PRO SEQRES 48 A 657 ALA ALA ALA MET THR LYS GLN GLU ARG GLU GLU LEU ILE SEQRES 49 A 657 ARG THR LEU GLU ALA GLU MET LYS GLU ALA ALA LYS ALA SEQRES 50 A 657 LEU ASP PHE GLU ARG ALA ALA GLN LEU ARG ASP ILE ILE SEQRES 51 A 657 PHE GLU LEU LYS ALA GLU GLY HET MG A 703 1 HET ZN A 701 1 HET ZN A 702 1 HET ATP A 700 31 HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 ZN 2(ZN 2+) FORMUL 5 ATP C10 H16 N5 O13 P3 HELIX 1 1 ASP A 16 ARG A 30 1 15 HELIX 2 2 GLY A 44 ASN A 57 1 14 HELIX 3 3 ASN A 66 PHE A 81 1 16 HELIX 4 4 ASP A 117 LEU A 130 1 14 HELIX 5 5 VAL A 142 TYR A 146 5 5 HELIX 6 6 ALA A 171 LEU A 176 1 6 HELIX 7 7 ARG A 252 GLY A 278 1 27 HELIX 8 8 LEU A 286 GLU A 299 1 14 HELIX 9 9 GLY A 305 ASN A 308 5 4 HELIX 10 10 TYR A 309 LEU A 315 1 7 HELIX 11 11 THR A 324 TYR A 328 5 5 HELIX 12 12 GLU A 339 GLY A 349 1 11 HELIX 13 13 GLY A 349 HIS A 364 1 16 HELIX 14 14 LEU A 368 LEU A 372 5 5 HELIX 15 15 THR A 378 GLN A 384 1 7 HELIX 16 16 GLY A 397 GLU A 402 1 6 HELIX 17 17 GLY A 429 GLU A 443 1 15 HELIX 18 18 THR A 454 GLU A 467 1 14 HELIX 19 19 THR A 481 ARG A 492 1 12 HELIX 20 20 GLY A 526 ARG A 529 5 4 HELIX 21 21 SER A 530 GLY A 539 1 10 HELIX 22 22 ARG A 540 ALA A 542 5 3 HELIX 23 23 THR A 557 HIS A 581 1 25 SHEET 1 A 7 ALA A 85 PHE A 89 0 SHEET 2 A 7 VAL A 136 ALA A 140 1 N ILE A 137 O ALA A 85 SHEET 3 A 7 THR A 60 ILE A 63 1 N THR A 60 O VAL A 136 SHEET 4 A 7 LEU A 334 VAL A 337 1 O LEU A 334 N LEU A 61 SHEET 5 A 7 ILE A 389 VAL A 392 1 O ILE A 390 N VAL A 337 SHEET 6 A 7 HIS A 34 GLY A 39 1 O GLN A 35 N TYR A 391 SHEET 7 A 7 VAL A 407 GLN A 410 1 O VAL A 408 N LEU A 38 SHEET 1 B 2 TYR A 101 VAL A 102 0 SHEET 2 B 2 THR A 107 TYR A 108 -1 N THR A 107 O VAL A 102 SHEET 1 C 2 VAL A 159 ARG A 162 0 SHEET 2 C 2 HIS A 240 ILE A 243 -1 N VAL A 241 O LEU A 161 SHEET 1 D 1 GLU A 226 ASP A 228 0 SHEET 1 E 5 THR A 421 ARG A 425 0 SHEET 2 E 5 HIS A 548 TYR A 552 1 O VAL A 549 N ASP A 423 SHEET 3 E 5 VAL A 514 ILE A 519 1 O SER A 515 N HIS A 548 SHEET 4 E 5 ARG A 447 THR A 451 1 O ARG A 447 N SER A 515 SHEET 5 E 5 VAL A 500 GLY A 501 1 N GLY A 501 O VAL A 450 LINK NE2 HIS A 403 ZN ZN A 701 1555 1555 2.14 LINK NE2 HIS A 581 ZN ZN A 702 1555 1555 2.27 LINK O1B ATP A 700 MG MG A 703 1555 1555 2.97 SITE 1 AC1 2 GLU A 339 ATP A 700 SITE 1 AC2 1 HIS A 403 SITE 1 AC3 2 LYS A 580 HIS A 581 SITE 1 AC4 10 TYR A 11 GLU A 12 GLN A 14 GLN A 17 SITE 2 AC4 10 THR A 41 GLY A 42 GLY A 44 LYS A 45 SITE 3 AC4 10 THR A 46 MG A 703 CRYST1 153.443 153.443 80.741 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006520 0.003760 0.000000 0.00000 SCALE2 0.000000 0.007530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012390 0.00000