PDB Short entry for 1DGC HEADER TRANSCRIPTION/DNA 15-JUL-93 1DGC TITLE THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE DNA SHOWS TITLE 2 THE COMPLEX DEPENDS ON DNA FLEXIBILITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3'); COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN (GCN4); COMPND 8 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 5 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 6 ORGANISM_TAXID: 4932 KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.KOENIG,T.J.RICHMOND REVDAT 4 07-FEB-24 1DGC 1 REMARK REVDAT 3 24-FEB-09 1DGC 1 VERSN REVDAT 2 01-APR-03 1DGC 1 JRNL REVDAT 1 22-JUN-94 1DGC 0 JRNL AUTH P.KONIG,T.J.RICHMOND JRNL TITL THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE JRNL TITL 2 DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITY. JRNL REF J.MOL.BIOL. V. 233 139 1993 JRNL REFN ISSN 0022-2836 JRNL PMID 8377181 JRNL DOI 10.1006/JMBI.1993.1490 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 3296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 456 REMARK 3 NUCLEIC ACID ATOMS : 386 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 3.860 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.25 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.25, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.33000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.33000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.66500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.33000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.99500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.33000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.33000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.66500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.33000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.33000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.99500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.33000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS ONE HALF OF PROTEIN/DNA REMARK 300 COMPLEX PER ASYMMETRIC UNIT. REMARK 300 REMARK 300 MOLECULAR DYAD AXIS OF PROTEIN DIMER AND PALINDROMIC HALF REMARK 300 SITES OF THE DNA COINCIDES WITH CRYSTALLOGRAPHIC TWO-FOLD REMARK 300 AXIS. THE FULL PROTEIN/DNA COMPLEX CAN BE OBTAINED BY REMARK 300 APPLYING THE FOLLOWING TRANSFORMATION MATRIX AND REMARK 300 TRANSLATION VECTOR TO THE COORDINATES X Y Z: REMARK 300 REMARK 300 0 -1 0 X 117.32 X SYMM REMARK 300 -1 0 0 Y + 117.32 = Y SYMM REMARK 300 0 0 -1 Z 43.33 Z SYMM REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 117.32000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 117.32000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.33000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 220 REMARK 465 VAL A 221 REMARK 465 PRO A 222 REMARK 465 GLU A 223 REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 ASP A 226 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B -10 C5' DT B -10 C4' 0.056 REMARK 500 DG B -9 P DG B -9 O5' 0.079 REMARK 500 DG B -9 C5' DG B -9 C4' 0.073 REMARK 500 DG B -8 C5' DG B -8 C4' 0.068 REMARK 500 DT B -4 C5 DT B -4 C7 0.038 REMARK 500 DG B -3 C6 DG B -3 N1 -0.045 REMARK 500 DT B 5 C5' DT B 5 C4' 0.050 REMARK 500 DT B 5 C6 DT B 5 N1 -0.052 REMARK 500 DC B 6 P DC B 6 O5' 0.110 REMARK 500 DC B 6 C5' DC B 6 C4' 0.050 REMARK 500 DT B 7 C5 DT B 7 C7 0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B -10 O4' - C1' - C2' ANGL. DEV. = -5.7 DEGREES REMARK 500 DT B -10 C4 - C5 - C7 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT B -10 C6 - C5 - C7 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG B -9 O4' - C1' - N9 ANGL. DEV. = 14.5 DEGREES REMARK 500 DG B -8 P - O5' - C5' ANGL. DEV. = 15.0 DEGREES REMARK 500 DG B -8 C5' - C4' - O4' ANGL. DEV. = 8.0 DEGREES REMARK 500 DG B -8 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA B -5 O4' - C1' - N9 ANGL. DEV. = 8.7 DEGREES REMARK 500 DA B -5 C3' - O3' - P ANGL. DEV. = 11.4 DEGREES REMARK 500 DT B -4 N3 - C2 - O2 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT B -4 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG B -3 O3' - P - O5' ANGL. DEV. = -14.3 DEGREES REMARK 500 DG B -3 C5' - C4' - C3' ANGL. DEV. = -12.1 DEGREES REMARK 500 DG B -3 O4' - C1' - N9 ANGL. DEV. = 6.7 DEGREES REMARK 500 DA B -2 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC B -1 N1 - C2 - O2 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG B 1 C3' - O3' - P ANGL. DEV. = 14.1 DEGREES REMARK 500 DT B 2 O4' - C4' - C3' ANGL. DEV. = -4.5 DEGREES REMARK 500 DT B 2 O4' - C1' - C2' ANGL. DEV. = -7.3 DEGREES REMARK 500 DC B 3 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DC B 3 O4' - C1' - N1 ANGL. DEV. = 7.7 DEGREES REMARK 500 DA B 4 O4' - C1' - N9 ANGL. DEV. = 9.0 DEGREES REMARK 500 DT B 5 C5' - C4' - O4' ANGL. DEV. = 9.9 DEGREES REMARK 500 DT B 5 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT B 5 C4 - C5 - C6 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT B 5 N3 - C2 - O2 ANGL. DEV. = -6.0 DEGREES REMARK 500 DT B 5 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DC B 6 O4' - C1' - N1 ANGL. DEV. = 10.1 DEGREES REMARK 500 DC B 6 N1 - C2 - O2 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC B 6 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT B 7 C4' - C3' - O3' ANGL. DEV. = 12.7 DEGREES REMARK 500 DT B 7 O4' - C1' - N1 ANGL. DEV. = 6.6 DEGREES REMARK 500 DT B 7 C3' - O3' - P ANGL. DEV. = 13.5 DEGREES REMARK 500 DC B 8 N1 - C1' - C2' ANGL. DEV. = -11.6 DEGREES REMARK 500 DC B 8 O4' - C1' - N1 ANGL. DEV. = 7.8 DEGREES REMARK 500 DC B 9 N1 - C1' - C2' ANGL. DEV. = 8.6 DEGREES REMARK 500 DC B 9 O4' - C1' - N1 ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG A 243 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 243 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 249 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LYS A 256 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 229 -48.66 -27.35 REMARK 500 LEU A 277 -39.80 178.94 REMARK 500 GLU A 280 -13.76 161.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 AMINO ACIDS NUMBERING (RESIDUE NUMBER) CORRESPONDS TO THE REMARK 999 281 AMINO ACIDS OF INTACT GCN4. DBREF 1DGC A 220 281 UNP P03069 GCN4_YEAST 220 281 DBREF 1DGC B -10 9 PDB 1DGC 1DGC -10 9 SEQRES 1 B 19 DT DG DG DA DG DA DT DG DA DC DG DT DC SEQRES 2 B 19 DA DT DC DT DC DC SEQRES 1 A 62 ILE VAL PRO GLU SER SER ASP PRO ALA ALA LEU LYS ARG SEQRES 2 A 62 ALA ARG ASN THR GLU ALA ALA ARG ARG SER ARG ALA ARG SEQRES 3 A 62 LYS LEU GLN ARG MET LYS GLN LEU GLU ASP LYS VAL GLU SEQRES 4 A 62 GLU LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU VAL SEQRES 5 A 62 ALA ARG LEU LYS LYS LEU VAL GLY GLU ARG HELIX 1 A ALA A 228 LYS A 276 1 49 CRYST1 58.660 58.660 86.660 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017047 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011539 0.00000