PDB Short entry for 1DGK HEADER TRANSFERASE 24-NOV-99 1DGK TITLE MUTANT MONOMER OF RECOMBINANT HUMAN HEXOKINASE TYPE I WITH GLUCOSE AND TITLE 2 ADP IN THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEXOKINASE TYPE I; COMPND 3 CHAIN: N; COMPND 4 SYNONYM: HK I, BRAIN FORM HEXOKINASE; COMPND 5 EC: 2.7.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: SECOND MOLECULE OF ADP IS BOUND NEAR THE N-TERMINUS OF COMPND 9 THE POLYPEPTIDE CHAIN. THE REGULATORY SITE OF THE N-TERMINAL DOMAIN COMPND 10 IS OCCUPIED WITH GLUCOSE AND PHOSPHATE. MUTATIONS IN DIMER INTERFACE COMPND 11 AND THE ACTIVE SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BRAIN; SOURCE 6 CELL: NEURON; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS BRAIN HEXOKINASE, MAMMALIAN HEXOKINASE 1, SUGAR KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.E.ALESHIN,X.LIU,C.KIRBY,G.P.BOURENKOV,H.D.BARTUNIK,H.J.FROMM, AUTHOR 2 R.B.HONZATKO REVDAT 7 07-FEB-24 1DGK 1 REMARK REVDAT 6 03-NOV-21 1DGK 1 SEQADV HETSYN REVDAT 5 29-JUL-20 1DGK 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 SITE REVDAT 4 31-JAN-18 1DGK 1 JRNL REVDAT 3 24-FEB-09 1DGK 1 VERSN REVDAT 2 01-APR-03 1DGK 1 JRNL REVDAT 1 08-MAR-00 1DGK 0 JRNL AUTH A.E.ALESHIN,C.KIRBY,X.LIU,G.P.BOURENKOV,H.D.BARTUNIK, JRNL AUTH 2 H.J.FROMM,R.B.HONZATKO JRNL TITL CRYSTAL STRUCTURES OF MUTANT MONOMERIC HEXOKINASE I REVEAL JRNL TITL 2 MULTIPLE ADP BINDING SITES AND CONFORMATIONAL CHANGES JRNL TITL 3 RELEVANT TO ALLOSTERIC REGULATION. JRNL REF J.MOL.BIOL. V. 296 1001 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10686099 JRNL DOI 10.1006/JMBI.1999.3494 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.E.ALESHIN,C.ZENG,H.D.BARTUNIK,H.J.FROMM,R.B.HONZATKO REMARK 1 TITL REGULATION OF HEXOKINASE I: CRYSTAL STRUCTURE OF RECOMBINANT REMARK 1 TITL 2 HUMAN BRAIN HEXOKINASE COMPLEXED WITH GLUCOSE AND PHOSPHATE REMARK 1 REF J.MOL.BIOL. V. 282 345 1998 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1998.2017 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.E.ALESHIN,C.ZENG,H.D.BARTUNIK,H.J.FROMM,R.B.HONZATKO REMARK 1 TITL THE MECHANISM OF REGULATION OF HEXOKINASE: NEW INSIGHTS FROM REMARK 1 TITL 2 THE CRYSTAL STRUCTURE OF RECOMBINANT HUMAN BRAIN HEXOKINASE REMARK 1 TITL 3 COMPLEXED WITH GLUCOSE AND GLUCOSE-6-PHOSPHATE REMARK 1 REF STRUCTURE V. 6 39 1998 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(98)00006-9 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 3 NUMBER OF REFLECTIONS : 23882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1241 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7019 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.010 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.039 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 USED MAXIMUM LIKELIHOOD RESIDUALS AND CONJUGATE DIRECTION REMARK 3 MINIMIZATION.SIDE REMARK 3 CHAINS OF RESIDUES 16, 17, 20, 21, 24, 101, 102, 252, 353, 794-799, REMARK 3 801, 804, REMARK 3 806, 809-811 HAVE POOR ELECTRON DENSITY. THEIR OCCUPANCIES ARE SET REMARK 3 TO 0.01 REMARK 4 REMARK 4 1DGK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000010068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25465 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 200 DATA REDUNDANCY : 2.640 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM ACETATE, MES, ADP, REMARK 280 GLUCOSE, GLUCOSE-6-PHOSPHATE. GROWN CRYSTALS WERE SOAKED WITH REMARK 280 THE SAME BUFFER, BUT W/O GLUCOSE-6-PHOSPHATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 72.89000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 73.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.89000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 73.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET N 1 REMARK 465 ILE N 2 REMARK 465 ALA N 3 REMARK 465 ALA N 4 REMARK 465 GLN N 5 REMARK 465 LEU N 6 REMARK 465 LEU N 7 REMARK 465 ALA N 8 REMARK 465 TYR N 9 REMARK 465 TYR N 10 REMARK 465 PHE N 11 REMARK 465 THR N 12 REMARK 465 GLU N 13 REMARK 465 LEU N 14 REMARK 465 LYS N 15 REMARK 465 GLU N 914 REMARK 465 ALA N 915 REMARK 465 SER N 916 REMARK 465 SER N 917 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR N 27 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG N 30 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG N 30 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 THR N 41 CA - CB - CG2 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG N 44 CD - NE - CZ ANGL. DEV. = 11.6 DEGREES REMARK 500 ASP N 79 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP N 84 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG N 91 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG N 91 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG N 94 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG N 141 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 GLU N 181 OE1 - CD - OE2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG N 196 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP N 200 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 GLU N 225 OE1 - CD - OE2 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG N 243 CD - NE - CZ ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG N 243 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG N 243 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP N 246 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP N 246 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP N 261 CA - CB - CG ANGL. DEV. = 12.8 DEGREES REMARK 500 ASP N 267 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG N 274 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 PHE N 277 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG N 279 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG N 279 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR N 284 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR N 284 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 GLU N 294 OE1 - CD - OE2 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG N 307 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG N 307 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 GLU N 343 OE1 - CD - OE2 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG N 381 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG N 396 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG N 405 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG N 405 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG N 407 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG N 426 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG N 432 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG N 433 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG N 441 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG N 462 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG N 468 NE - CZ - NH1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG N 468 NE - CZ - NH2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG N 492 NH1 - CZ - NH2 ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG N 492 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG N 492 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 LYS N 510 CD - CE - NZ ANGL. DEV. = 16.3 DEGREES REMARK 500 PHE N 515 CB - CG - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG N 517 CG - CD - NE ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 103 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP N 17 -71.60 -49.66 REMARK 500 ARG N 30 75.95 -102.91 REMARK 500 ASN N 104 -74.55 -59.13 REMARK 500 LYS N 173 -136.86 53.38 REMARK 500 LYS N 176 70.77 -165.71 REMARK 500 LYS N 621 -141.16 60.61 REMARK 500 LYS N 624 23.32 -148.12 REMARK 500 GLU N 646 -93.61 -128.11 REMARK 500 PHE N 768 29.83 46.54 REMARK 500 GLU N 774 -28.45 -36.37 REMARK 500 GLU N 783 153.53 -42.10 REMARK 500 ASP N 793 -160.93 -115.82 REMARK 500 ARG N 794 -161.73 -104.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA N 796 12.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CZA RELATED DB: PDB REMARK 900 MUTANT MONOMER OF RECOMBINANT HUMAN HEXOKINASE TYPE I COMPLEXED REMARK 900 WITH GLUCOSE, GLUCOSE-6-PHOSPHATE, AND ADP REMARK 900 RELATED ID: 1HKB RELATED DB: PDB REMARK 900 NONCRYSTALLOGRAPHIC DIMER OF WILD-TYPE HUMAN HEXOKINASE I COMPLEXED REMARK 900 WITH GLUCOSE AND GLUCOSE-6-PHOSPHATE REMARK 900 RELATED ID: 1HKC RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC DIMER OF WILD-TYPE HUMAN HEXOKINASE I COMPLEXED REMARK 900 WITH GLUCOSE AND PHOSPHATE DBREF 1DGK N 1 917 UNP P19367 HXK1_HUMAN 1 917 SEQADV 1DGK GLU N 240 UNP P19367 ALA 280 ENGINEERED MUTATION SEQADV 1DGK ARG N 243 UNP P19367 ALA 283 ENGINEERED MUTATION SEQADV 1DGK TYR N 284 UNP P19367 GLY 284 ENGINEERED MUTATION SEQADV 1DGK ALA N 536 UNP P19367 THR 536 ENGINEERED MUTATION SEQADV 1DGK ASP N 730 UNP P19367 ASN 730 CONFLICT SEQADV 1DGK LEU N 776 UNP P19367 MET 776 CONFLICT SEQRES 1 N 917 MET ILE ALA ALA GLN LEU LEU ALA TYR TYR PHE THR GLU SEQRES 2 N 917 LEU LYS ASP ASP GLN VAL LYS LYS ILE ASP LYS TYR LEU SEQRES 3 N 917 TYR ALA MET ARG LEU SER ASP GLU THR LEU ILE ASP ILE SEQRES 4 N 917 MET THR ARG PHE ARG LYS GLU MET LYS ASN GLY LEU SER SEQRES 5 N 917 ARG ASP PHE ASN PRO THR ALA THR VAL LYS MET LEU PRO SEQRES 6 N 917 THR PHE VAL ARG SER ILE PRO ASP GLY SER GLU LYS GLY SEQRES 7 N 917 ASP PHE ILE ALA LEU ASP LEU GLY GLY SER SER PHE ARG SEQRES 8 N 917 ILE LEU ARG VAL GLN VAL ASN HIS GLU LYS ASN GLN ASN SEQRES 9 N 917 VAL HIS MET GLU SER GLU VAL TYR ASP THR PRO GLU ASN SEQRES 10 N 917 ILE VAL HIS GLY SER GLY SER GLN LEU PHE ASP HIS VAL SEQRES 11 N 917 ALA GLU CYS LEU GLY ASP PHE MET GLU LYS ARG LYS ILE SEQRES 12 N 917 LYS ASP LYS LYS LEU PRO VAL GLY PHE THR PHE SER PHE SEQRES 13 N 917 PRO CYS GLN GLN SER LYS ILE ASP GLU ALA ILE LEU ILE SEQRES 14 N 917 THR TRP THR LYS ARG PHE LYS ALA SER GLY VAL GLU GLY SEQRES 15 N 917 ALA ASP VAL VAL LYS LEU LEU ASN LYS ALA ILE LYS LYS SEQRES 16 N 917 ARG GLY ASP TYR ASP ALA ASN ILE VAL ALA VAL VAL ASN SEQRES 17 N 917 ASP THR VAL GLY THR MET MET THR CYS GLY TYR ASP ASP SEQRES 18 N 917 GLN HIS CYS GLU VAL GLY LEU ILE ILE GLY THR GLY THR SEQRES 19 N 917 ASN ALA CYS TYR MET GLU GLU LEU ARG HIS ILE ASP LEU SEQRES 20 N 917 VAL GLU GLY ASP GLU GLY ARG MET CYS ILE ASN THR GLU SEQRES 21 N 917 TRP GLY ALA PHE GLY ASP ASP GLY SER LEU GLU ASP ILE SEQRES 22 N 917 ARG THR GLU PHE ASP ARG ALA ILE ASP ALA TYR SER LEU SEQRES 23 N 917 ASN PRO GLY LYS GLN LEU PHE GLU LYS MET VAL SER GLY SEQRES 24 N 917 MET TYR LEU GLY GLU LEU VAL ARG LEU ILE LEU VAL LYS SEQRES 25 N 917 MET ALA LYS GLU GLY LEU LEU PHE GLU GLY ARG ILE THR SEQRES 26 N 917 PRO GLU LEU LEU THR ARG GLY LYS PHE ASN THR SER ASP SEQRES 27 N 917 VAL SER ALA ILE GLU LYS ASN LYS GLU GLY LEU HIS ASN SEQRES 28 N 917 ALA LYS GLU ILE LEU THR ARG LEU GLY VAL GLU PRO SER SEQRES 29 N 917 ASP ASP ASP CYS VAL SER VAL GLN HIS VAL CYS THR ILE SEQRES 30 N 917 VAL SER PHE ARG SER ALA ASN LEU VAL ALA ALA THR LEU SEQRES 31 N 917 GLY ALA ILE LEU ASN ARG LEU ARG ASP ASN LYS GLY THR SEQRES 32 N 917 PRO ARG LEU ARG THR THR VAL GLY VAL ASP GLY SER LEU SEQRES 33 N 917 TYR LYS THR HIS PRO GLN TYR SER ARG ARG PHE HIS LYS SEQRES 34 N 917 THR LEU ARG ARG LEU VAL PRO ASP SER ASP VAL ARG PHE SEQRES 35 N 917 LEU LEU SER GLU SER GLY SER GLY LYS GLY ALA ALA MET SEQRES 36 N 917 VAL THR ALA VAL ALA TYR ARG LEU ALA GLU GLN HIS ARG SEQRES 37 N 917 GLN ILE GLU GLU THR LEU ALA HIS PHE HIS LEU THR LYS SEQRES 38 N 917 ASP MET LEU LEU GLU VAL LYS LYS ARG MET ARG ALA GLU SEQRES 39 N 917 MET GLU LEU GLY LEU ARG LYS GLN THR HIS ASN ASN ALA SEQRES 40 N 917 VAL VAL LYS MET LEU PRO SER PHE VAL ARG ARG THR PRO SEQRES 41 N 917 ASP GLY THR GLU ASN GLY ASP PHE LEU ALA LEU ASP LEU SEQRES 42 N 917 GLY GLY ALA ASN PHE ARG VAL LEU LEU VAL LYS ILE ARG SEQRES 43 N 917 SER GLY LYS LYS ARG THR VAL GLU MET HIS ASN LYS ILE SEQRES 44 N 917 TYR ALA ILE PRO ILE GLU ILE MET GLN GLY THR GLY GLU SEQRES 45 N 917 GLU LEU PHE ASP HIS ILE VAL SER CYS ILE SER ASP PHE SEQRES 46 N 917 LEU ASP TYR MET GLY ILE LYS GLY PRO ARG MET PRO LEU SEQRES 47 N 917 GLY PHE THR PHE SER PHE PRO CYS GLN GLN THR SER LEU SEQRES 48 N 917 ASP ALA GLY ILE LEU ILE THR TRP THR LYS GLY PHE LYS SEQRES 49 N 917 ALA THR ASP CYS VAL GLY HIS ASP VAL VAL THR LEU LEU SEQRES 50 N 917 ARG ASP ALA ILE LYS ARG ARG GLU GLU PHE ASP LEU ASP SEQRES 51 N 917 VAL VAL ALA VAL VAL ASN ASP THR VAL GLY THR MET MET SEQRES 52 N 917 THR CYS ALA TYR GLU GLU PRO THR CYS GLU VAL GLY LEU SEQRES 53 N 917 ILE VAL GLY THR GLY SER ASN ALA CYS TYR MET GLU GLU SEQRES 54 N 917 MET LYS ASN VAL GLU MET VAL GLU GLY ASP GLN GLY GLN SEQRES 55 N 917 MET CYS ILE ASN MET GLU TRP GLY ALA PHE GLY ASP ASN SEQRES 56 N 917 GLY CYS LEU ASP ASP ILE ARG THR HIS TYR ASP ARG LEU SEQRES 57 N 917 VAL ASP GLU TYR SER LEU ASN ALA GLY LYS GLN ARG TYR SEQRES 58 N 917 GLU LYS MET ILE SER GLY MET TYR LEU GLY GLU ILE VAL SEQRES 59 N 917 ARG ASN ILE LEU ILE ASP PHE THR LYS LYS GLY PHE LEU SEQRES 60 N 917 PHE ARG GLY GLN ILE SER GLU THR LEU LYS THR ARG GLY SEQRES 61 N 917 ILE PHE GLU THR LYS PHE LEU SER GLN ILE GLU SER ASP SEQRES 62 N 917 ARG LEU ALA LEU LEU GLN VAL ARG ALA ILE LEU GLN GLN SEQRES 63 N 917 LEU GLY LEU ASN SER THR CYS ASP ASP SER ILE LEU VAL SEQRES 64 N 917 LYS THR VAL CYS GLY VAL VAL SER ARG ARG ALA ALA GLN SEQRES 65 N 917 LEU CYS GLY ALA GLY MET ALA ALA VAL VAL ASP LYS ILE SEQRES 66 N 917 ARG GLU ASN ARG GLY LEU ASP ARG LEU ASN VAL THR VAL SEQRES 67 N 917 GLY VAL ASP GLY THR LEU TYR LYS LEU HIS PRO HIS PHE SEQRES 68 N 917 SER ARG ILE MET HIS GLN THR VAL LYS GLU LEU SER PRO SEQRES 69 N 917 LYS CYS ASN VAL SER PHE LEU LEU SER GLU ASP GLY SER SEQRES 70 N 917 GLY LYS GLY ALA ALA LEU ILE THR ALA VAL GLY VAL ARG SEQRES 71 N 917 LEU ARG THR GLU ALA SER SER HET GLC N 918 12 HET GLC N 919 12 HET PO4 N 920 5 HET ADP N 921 27 HET ADP N 922 27 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 4 PO4 O4 P 3- FORMUL 5 ADP 2(C10 H15 N5 O10 P2) FORMUL 7 HOH *94(H2 O) HELIX 1 1 ASP N 16 LEU N 26 1 11 HELIX 2 2 TYR N 27 ARG N 30 5 4 HELIX 3 3 SER N 32 SER N 52 1 21 HELIX 4 4 PHE N 55 ALA N 59 5 5 HELIX 5 5 PRO N 115 GLY N 121 1 7 HELIX 6 6 SER N 122 LYS N 142 1 21 HELIX 7 7 ASP N 184 GLY N 197 1 14 HELIX 8 8 ASN N 208 ASP N 221 1 14 HELIX 9 9 ARG N 243 ILE N 245 5 3 HELIX 10 10 GLU N 260 PHE N 264 5 5 HELIX 11 11 THR N 275 TYR N 284 1 10 HELIX 12 12 PHE N 293 SER N 298 1 6 HELIX 13 13 SER N 298 GLU N 316 1 19 HELIX 14 14 LEU N 319 ARG N 323 5 5 HELIX 15 15 THR N 325 THR N 330 1 6 HELIX 16 16 ASN N 335 GLU N 343 1 9 HELIX 17 17 GLU N 347 LEU N 359 1 13 HELIX 18 18 SER N 364 GLY N 402 1 39 HELIX 19 19 GLY N 414 HIS N 420 1 7 HELIX 20 20 GLN N 422 VAL N 435 1 14 HELIX 21 21 GLY N 448 HIS N 476 1 29 HELIX 22 22 THR N 480 ARG N 500 1 21 HELIX 23 23 ARG N 500 ASN N 505 1 6 HELIX 24 24 PRO N 563 GLN N 568 1 6 HELIX 25 25 THR N 570 GLY N 590 1 21 HELIX 26 26 ASP N 632 GLU N 645 1 14 HELIX 27 27 ASN N 656 TYR N 667 1 12 HELIX 28 28 LYS N 691 VAL N 693 5 3 HELIX 29 29 GLU N 708 PHE N 712 5 5 HELIX 30 30 THR N 723 TYR N 732 1 10 HELIX 31 31 TYR N 741 SER N 746 1 6 HELIX 32 32 TYR N 749 LYS N 764 1 16 HELIX 33 33 LEU N 767 GLN N 771 5 5 HELIX 34 34 THR N 784 GLU N 791 1 8 HELIX 35 35 LEU N 797 GLY N 808 1 12 HELIX 36 36 THR N 812 ARG N 849 1 38 HELIX 37 37 GLY N 862 HIS N 868 1 7 HELIX 38 38 HIS N 870 SER N 883 1 14 HELIX 39 39 SER N 897 ARG N 912 1 16 SHEET 1 A 6 LEU N 64 PRO N 65 0 SHEET 2 A 6 ARG N 254 ASN N 258 -1 N ASN N 258 O LEU N 64 SHEET 3 A 6 THR N 234 GLU N 241 -1 O TYR N 238 N ILE N 257 SHEET 4 A 6 CYS N 224 ILE N 230 -1 O GLU N 225 N MET N 239 SHEET 5 A 6 LEU N 406 ASP N 413 1 O THR N 409 N GLU N 225 SHEET 6 A 6 SER N 438 LEU N 444 1 N ASP N 439 O LEU N 406 SHEET 1 B 5 GLN N 103 TYR N 112 0 SHEET 2 B 5 PHE N 90 GLU N 100 -1 O PHE N 90 N TYR N 112 SHEET 3 B 5 GLY N 78 LEU N 85 -1 O GLY N 78 N VAL N 97 SHEET 4 B 5 VAL N 150 PHE N 154 1 N GLY N 151 O ILE N 81 SHEET 5 B 5 ILE N 203 VAL N 207 1 N VAL N 204 O VAL N 150 SHEET 1 C 2 CYS N 158 GLN N 159 0 SHEET 2 C 2 ILE N 167 LEU N 168 -1 O ILE N 167 N GLN N 159 SHEET 1 D 6 LEU N 512 PRO N 513 0 SHEET 2 D 6 GLN N 702 ASN N 706 -1 N ASN N 706 O LEU N 512 SHEET 3 D 6 SER N 682 GLU N 689 -1 O TYR N 686 N ILE N 705 SHEET 4 D 6 CYS N 672 VAL N 678 -1 O GLU N 673 N MET N 687 SHEET 5 D 6 LEU N 854 ASP N 861 1 O THR N 857 N GLU N 673 SHEET 6 D 6 CYS N 886 LEU N 892 1 N ASN N 887 O LEU N 854 SHEET 1 E 5 THR N 552 TYR N 560 0 SHEET 2 E 5 PHE N 538 ARG N 546 -1 O PHE N 538 N TYR N 560 SHEET 3 E 5 GLY N 526 LEU N 533 -1 O GLY N 526 N ILE N 545 SHEET 4 E 5 PRO N 597 PHE N 602 1 O PRO N 597 N LEU N 529 SHEET 5 E 5 ASP N 650 VAL N 655 1 O ASP N 650 N LEU N 598 SHEET 1 F 2 CYS N 606 SER N 610 0 SHEET 2 F 2 ALA N 613 LEU N 616 -1 N ALA N 613 O SER N 610 CRYST1 145.780 146.830 58.590 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006860 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017070 0.00000