PDB Short entry for 1DJS HEADER HORMONE/GROWTH FACTOR/RECEPTOR 03-DEC-99 1DJS TITLE LIGAND-BINDING PORTION OF FIBROBLAST GROWTH FACTOR RECEPTOR 2 IN TITLE 2 COMPLEX WITH FGF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (FIBROBLAST GROWTH FACTOR RECEPTOR 2); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG-LIKE DOMAINS 2 AND 3; COMPND 5 EC: 2.7.1.112; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROTEIN (FIBROBLAST GROWTH FACTOR 1); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FGFR, FGF, IMMUNOGLOBULIN, IMMUNE SYSTEM, HORMONE-GROWTH FACTOR- KEYWDS 2 RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.J.STAUBER,A.D.DIGABRIELE,W.A.HENDRICKSON REVDAT 9 21-DEC-22 1DJS 1 REMARK SEQADV LINK REVDAT 8 14-MAR-18 1DJS 1 SEQADV REVDAT 7 23-AUG-17 1DJS 1 SOURCE REMARK REVDAT 6 13-JUL-11 1DJS 1 VERSN REVDAT 5 24-FEB-09 1DJS 1 VERSN REVDAT 4 01-APR-03 1DJS 1 JRNL REVDAT 3 23-JUN-00 1DJS 1 HEADER COMPND DBREF SEQADV REVDAT 2 06-MAR-00 1DJS 1 HEADER REMARK REVDAT 1 12-JAN-00 1DJS 0 JRNL AUTH D.J.STAUBER,A.D.DIGABRIELE,W.A.HENDRICKSON JRNL TITL STRUCTURAL INTERACTIONS OF FIBROBLAST GROWTH FACTOR RECEPTOR JRNL TITL 2 WITH ITS LIGANDS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 97 49 2000 JRNL REFN ISSN 0027-8424 JRNL PMID 10618369 JRNL DOI 10.1073/PNAS.97.1.49 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 19354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2702 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 319 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.449 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.298 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.181 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.009 ; NULL REMARK 3 ANGLE DISTANCE (A) : 2.300 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DJS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000010141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9919, 0.9793, 0.9791, 0.9641 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MADSYS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 10MM TRIS REMARK 280 (PH7.5), PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 64.98500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 64.98500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.53000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 64.98500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 64.98500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 64.53000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 64.98500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 64.98500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 64.53000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 64.98500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 64.98500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 64.53000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 64.98500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.98500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 64.53000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 64.98500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 64.98500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 64.53000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 64.98500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 64.98500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 64.53000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 64.98500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 64.98500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 64.53000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -301.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 64.98500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 64.98500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.53000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 28610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -649.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 129.97000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 64.98500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -64.98500 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 64.53000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 64.98500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 64.98500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 64.53000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 297 REMARK 465 GLY A 298 REMARK 465 SER A 299 REMARK 465 LYS A 300 REMARK 465 TYR A 301 REMARK 465 GLY A 302 REMARK 465 PRO A 303 REMARK 465 ASP A 304 REMARK 465 GLY A 305 REMARK 465 LEU A 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASN B 92 O HOH B 410 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 162 CG MSE A 162 SE 0.486 REMARK 500 MSE A 186 SE MSE A 186 CE 0.967 REMARK 500 MSE A 218 CG MSE A 218 SE 0.303 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 153 CA - C - O ANGL. DEV. = -15.1 DEGREES REMARK 500 PRO A 154 CA - N - CD ANGL. DEV. = -9.0 DEGREES REMARK 500 PRO A 154 N - CA - CB ANGL. DEV. = 8.1 DEGREES REMARK 500 MSE A 162 CB - CG - SE ANGL. DEV. = -24.5 DEGREES REMARK 500 MSE A 162 CG - SE - CE ANGL. DEV. = -22.5 DEGREES REMARK 500 MSE A 186 CG - SE - CE ANGL. DEV. = -34.0 DEGREES REMARK 500 ARG A 210 CD - NE - CZ ANGL. DEV. = 10.1 DEGREES REMARK 500 MSE A 218 CB - CG - SE ANGL. DEV. = -24.1 DEGREES REMARK 500 MSE A 218 CG - SE - CE ANGL. DEV. = -22.5 DEGREES REMARK 500 ARG A 251 CD - NE - CZ ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 251 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 251 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 24 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 88 CD - NE - CZ ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG B 88 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 GLU B 90 O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 GLU B 91 CA - CB - CG ANGL. DEV. = 21.8 DEGREES REMARK 500 GLU B 91 CB - CG - CD ANGL. DEV. = 23.4 DEGREES REMARK 500 GLU B 91 O - C - N ANGL. DEV. = -12.5 DEGREES REMARK 500 ASN B 92 C - N - CA ANGL. DEV. = 21.6 DEGREES REMARK 500 HIS B 93 C - N - CA ANGL. DEV. = 17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 148 133.70 -26.32 REMARK 500 ALA A 172 8.15 80.09 REMARK 500 CYS A 179 53.94 -145.93 REMARK 500 PRO A 180 109.36 -51.59 REMARK 500 GLN A 212 -37.56 -152.82 REMARK 500 VAL A 294 -169.76 -119.38 REMARK 500 GLU A 295 79.79 11.75 REMARK 500 TYR A 308 -88.54 -58.31 REMARK 500 ASN B 18 -72.53 -51.80 REMARK 500 ASP B 32 -156.67 -151.84 REMARK 500 GLU B 91 -8.02 -40.09 REMARK 500 SER B 138 -153.74 -113.69 REMARK 500 SER B 139 -29.91 -17.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 409 DBREF 1DJS A 147 151 UNP P21802 FGR2_HUMAN 32 36 DBREF 1DJS A 152 362 UNP P21802 FGR2_HUMAN 152 362 DBREF 1DJS B 6 140 UNP P05230 FGF1_HUMAN 21 155 SEQADV 1DJS GLY A 152 UNP P21802 ARG 152 ENGINEERED MUTATION SEQADV 1DJS MSE A 162 UNP P21802 MET 162 MODIFIED RESIDUE SEQADV 1DJS MSE A 186 UNP P21802 MET 186 MODIFIED RESIDUE SEQADV 1DJS MSE A 189 UNP P21802 MET 189 MODIFIED RESIDUE SEQADV 1DJS MSE A 218 UNP P21802 MET 218 MODIFIED RESIDUE SEQADV 1DJS MSE B 67 UNP P05230 MET 82 MODIFIED RESIDUE SEQRES 1 A 216 THR LEU GLU PRO GLU GLY ALA PRO TYR TRP THR ASN THR SEQRES 2 A 216 GLU LYS MSE GLU LYS ARG LEU HIS ALA VAL PRO ALA ALA SEQRES 3 A 216 ASN THR VAL LYS PHE ARG CYS PRO ALA GLY GLY ASN PRO SEQRES 4 A 216 MSE PRO THR MSE ARG TRP LEU LYS ASN GLY LYS GLU PHE SEQRES 5 A 216 LYS GLN GLU HIS ARG ILE GLY GLY TYR LYS VAL ARG ASN SEQRES 6 A 216 GLN HIS TRP SER LEU ILE MSE GLU SER VAL VAL PRO SER SEQRES 7 A 216 ASP LYS GLY ASN TYR THR CYS VAL VAL GLU ASN GLU TYR SEQRES 8 A 216 GLY SER ILE ASN HIS THR TYR HIS LEU ASP VAL VAL GLU SEQRES 9 A 216 ARG SER PRO HIS ARG PRO ILE LEU GLN ALA GLY LEU PRO SEQRES 10 A 216 ALA ASN ALA SER THR VAL VAL GLY GLY ASP VAL GLU PHE SEQRES 11 A 216 VAL CYS LYS VAL TYR SER ASP ALA GLN PRO HIS ILE GLN SEQRES 12 A 216 TRP ILE LYS HIS VAL GLU LYS ASN GLY SER LYS TYR GLY SEQRES 13 A 216 PRO ASP GLY LEU PRO TYR LEU LYS VAL LEU LYS ALA ALA SEQRES 14 A 216 GLY VAL ASN THR THR ASP LYS GLU ILE GLU VAL LEU TYR SEQRES 15 A 216 ILE ARG ASN VAL THR PHE GLU ASP ALA GLY GLU TYR THR SEQRES 16 A 216 CYS LEU ALA GLY ASN SER ILE GLY ILE SER PHE HIS SER SEQRES 17 A 216 ALA TRP LEU THR VAL LEU PRO ALA SEQRES 1 B 135 GLY ASN TYR LYS LYS PRO LYS LEU LEU TYR CYS SER ASN SEQRES 2 B 135 GLY GLY HIS PHE LEU ARG ILE LEU PRO ASP GLY THR VAL SEQRES 3 B 135 ASP GLY THR ARG ASP ARG SER ASP GLN HIS ILE GLN LEU SEQRES 4 B 135 GLN LEU SER ALA GLU SER VAL GLY GLU VAL TYR ILE LYS SEQRES 5 B 135 SER THR GLU THR GLY GLN TYR LEU ALA MSE ASP THR ASP SEQRES 6 B 135 GLY LEU LEU TYR GLY SER GLN THR PRO ASN GLU GLU CYS SEQRES 7 B 135 LEU PHE LEU GLU ARG LEU GLU GLU ASN HIS TYR ASN THR SEQRES 8 B 135 TYR ILE SER LYS LYS HIS ALA GLU LYS ASN TRP PHE VAL SEQRES 9 B 135 GLY LEU LYS LYS ASN GLY SER CYS LYS ARG GLY PRO ARG SEQRES 10 B 135 THR HIS TYR GLY GLN LYS ALA ILE LEU PHE LEU PRO LEU SEQRES 11 B 135 PRO VAL SER SER ASP MODRES 1DJS MSE A 162 MET SELENOMETHIONINE MODRES 1DJS MSE A 186 MET SELENOMETHIONINE MODRES 1DJS MSE A 189 MET SELENOMETHIONINE MODRES 1DJS MSE A 218 MET SELENOMETHIONINE MODRES 1DJS MSE B 67 MET SELENOMETHIONINE HET MSE A 162 8 HET MSE A 186 8 HET MSE A 189 8 HET MSE A 218 8 HET MSE B 67 8 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 405 5 HET SO4 B 408 5 HET SO4 B 409 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 3 SO4 9(O4 S 2-) FORMUL 12 HOH *319(H2 O) HELIX 1 1 THR A 159 GLU A 163 5 5 HELIX 2 2 LYS A 199 ARG A 203 5 5 HELIX 3 3 VAL A 222 LYS A 226 5 5 HELIX 4 4 THR A 320 GLU A 325 1 6 HELIX 5 5 ASN B 80 CYS B 83 5 4 HELIX 6 6 ARG B 119 THR B 123 5 5 HELIX 7 7 GLN B 127 ILE B 130 5 4 SHEET 1 A 2 GLY A 152 TRP A 156 0 SHEET 2 A 2 ALA A 181 ASN A 184 -1 N GLY A 182 O TYR A 155 SHEET 1 B 5 LEU A 166 PRO A 170 0 SHEET 2 B 5 GLY A 238 VAL A 249 1 O HIS A 245 N HIS A 167 SHEET 3 B 5 GLY A 227 ASN A 235 -1 O GLY A 227 N LEU A 246 SHEET 4 B 5 THR A 188 LYS A 193 -1 N THR A 188 O GLU A 234 SHEET 5 B 5 LYS A 196 GLU A 197 -1 N LYS A 196 O LYS A 193 SHEET 1 C 3 VAL A 175 ARG A 178 0 SHEET 2 C 3 SER A 215 MSE A 218 -1 O LEU A 216 N PHE A 177 SHEET 3 C 3 LYS A 208 VAL A 209 -1 O LYS A 208 N ILE A 217 SHEET 1 D 2 ILE A 257 LEU A 258 0 SHEET 2 D 2 VAL A 280 TYR A 281 -1 O TYR A 281 N ILE A 257 SHEET 1 E 5 ALA A 266 VAL A 269 0 SHEET 2 E 5 ILE A 350 LEU A 360 1 O TRP A 356 N ALA A 266 SHEET 3 E 5 GLY A 338 GLY A 345 -1 O GLY A 338 N LEU A 357 SHEET 4 E 5 HIS A 287 HIS A 293 -1 N HIS A 287 O GLY A 345 SHEET 5 E 5 LEU A 309 ALA A 314 -1 N LYS A 310 O LYS A 292 SHEET 1 F 2 VAL A 274 VAL A 277 0 SHEET 2 F 2 VAL A 326 ILE A 329 -1 N LEU A 327 O PHE A 276 SHEET 1 G 4 VAL B 31 THR B 34 0 SHEET 2 G 4 HIS B 21 ILE B 25 -1 N PHE B 22 O THR B 34 SHEET 3 G 4 LEU B 13 CYS B 16 -1 O LEU B 14 N LEU B 23 SHEET 4 G 4 PHE B 132 LEU B 135 -1 N LEU B 133 O TYR B 15 SHEET 1 H 4 LEU B 44 SER B 50 0 SHEET 2 H 4 GLU B 53 SER B 58 -1 N GLU B 53 O SER B 50 SHEET 3 H 4 PHE B 85 LEU B 89 -1 O PHE B 85 N VAL B 54 SHEET 4 H 4 ASN B 95 SER B 99 -1 O THR B 96 N ARG B 88 SHEET 1 I 2 TYR B 64 MSE B 67 0 SHEET 2 I 2 LEU B 73 SER B 76 -1 N TYR B 74 O ALA B 66 SSBOND 1 CYS A 179 CYS A 231 1555 1555 2.00 SSBOND 2 CYS A 278 CYS A 342 1555 1555 2.04 LINK C LYS A 161 N MSE A 162 1555 1555 1.32 LINK C MSE A 162 N GLU A 163 1555 1555 1.33 LINK C PRO A 185 N MSE A 186 1555 1555 1.33 LINK C MSE A 186 N PRO A 187 1555 1555 1.32 LINK C THR A 188 N MSE A 189 1555 1555 1.32 LINK C MSE A 189 N ARG A 190 1555 1555 1.32 LINK C ILE A 217 N MSE A 218 1555 1555 1.33 LINK C MSE A 218 N GLU A 219 1555 1555 1.32 LINK C ALA B 66 N MSE B 67 1555 1555 1.31 LINK C MSE B 67 N ASP B 68 1555 1555 1.33 CISPEP 1 ASN A 184 PRO A 185 0 4.43 CISPEP 2 LEU A 262 PRO A 263 0 3.32 SITE 1 AC1 5 ASN B 18 LYS B 112 LYS B 113 LYS B 118 SITE 2 AC1 5 HOH B 447 SITE 1 AC2 4 LYS B 112 LYS B 118 ARG B 122 HOH B 505 SITE 1 AC3 6 PRO A 223 GLU A 339 SER A 354 ALA A 355 SITE 2 AC3 6 TRP A 356 HOH A 448 SITE 1 AC4 4 HIS A 254 ARG A 255 ILE A 348 HOH A 583 SITE 1 AC5 5 VAL B 137 SER B 138 HOH B 490 HOH B 501 SITE 2 AC5 5 HOH B 539 SITE 1 AC6 4 LYS A 176 ARG A 210 HIS A 213 ILE A 217 SITE 1 AC7 3 ARG A 178 LYS A 208 HOH A 565 SITE 1 AC8 8 GLU A 219 SER A 220 HOH A 427 SER B 17 SITE 2 AC8 8 ASN B 92 LYS B 128 LEU B 131 HOH B 476 SITE 1 AC9 5 GLY B 6 LYS B 12 PRO B 134 LEU B 135 SITE 2 AC9 5 PRO B 136 CRYST1 129.970 129.970 129.060 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007694 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007748 0.00000