PDB Short entry for 1DLH HEADER HISTOCOMPATIBILITY ANTIGEN 15-FEB-94 1DLH TITLE CRYSTAL STRUCTURE OF THE HUMAN CLASS II MHC PROTEIN HLA-DR1 COMPLEXED TITLE 2 WITH AN INFLUENZA VIRUS PEPTIDE CAVEAT 1DLH NAG B 521 HAS WRONG CHIRALITY AT ATOM C1 NAG E 521 HAS WRONG CAVEAT 2 1DLH CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (ALPHA COMPND 3 CHAIN); COMPND 4 CHAIN: A, D; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (BETA CHAIN); COMPND 8 CHAIN: B, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ENTEROTOXIN TYPE B PRECURSOR; COMPND 12 CHAIN: C, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: MOTHS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7106; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: SPODOPTERA; SOURCE 13 EXPRESSION_SYSTEM_COMMON: MOTHS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7106; SOURCE 15 MOL_ID: 3 KEYWDS HISTOCOMPATIBILITY ANTIGEN EXPDTA X-RAY DIFFRACTION AUTHOR L.J.STERN REVDAT 6 29-JUL-20 1DLH 1 CAVEAT COMPND REMARK HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 13-JUL-11 1DLH 1 VERSN REVDAT 4 25-AUG-09 1DLH 1 SOURCE REVDAT 3 24-FEB-09 1DLH 1 VERSN REVDAT 2 01-APR-03 1DLH 1 JRNL REVDAT 1 22-JUN-94 1DLH 0 JRNL AUTH L.J.STERN,J.H.BROWN,T.S.JARDETZKY,J.C.GORGA,R.G.URBAN, JRNL AUTH 2 J.L.STROMINGER,D.C.WILEY JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN CLASS II MHC PROTEIN HLA-DR1 JRNL TITL 2 COMPLEXED WITH AN INFLUENZA VIRUS PEPTIDE. JRNL REF NATURE V. 368 215 1994 JRNL REFN ISSN 0028-0836 JRNL PMID 8145819 JRNL DOI 10.1038/368215A0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.H.BROWN,T.S.JARDETZKY,J.C.GORGA,L.J.STERN,R.G.URBAN, REMARK 1 AUTH 2 J.L.STROMINGER,D.C.WILEY REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF THE HUMAN CLASS II REMARK 1 TITL 2 HISTOCOMPATIBILITY ANTIGEN HLA-DR1 REMARK 1 REF NATURE V. 364 33 1993 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 23847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6255 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 2.130 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.75000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.30000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 185.62500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.30000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.87500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.30000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.30000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 185.62500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.30000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.30000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.87500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TWO MOLECULES IN THE ASYMMETRIC UNIT ARE RELATED BY AN REMARK 300 APPROXIMATE TWO-FOLD AXIS. THE TRANSFORMATION PRESENTED ON REMARK 300 *MTRIX* RECORDS BELOW WILL YIELD APPROXIMATE COORDINATES REMARK 300 FOR CHAINS *D* AND *E* WHEN APPLIED TO CHAINS *A* AND *B*, REMARK 300 RESPECTIVELY. REMARK 300 REMARK 300 MOLECULE 1 : ALPHA CHAIN - RESIDUES A 3 THROUGH A 182 REMARK 300 : BETA CHAIN - RESIDUES B 3 THROUGH B 190 REMARK 300 : PEPTIDE - RESIDUES C 306 THROUGH C 318 REMARK 300 : SUGARS - RESIDUES A 501, B 511, B 512, REMARK 300 B 521 REMARK 300 MOLECULE 2 : ALPHA CHAIN - RESIDUES D 3 THROUGH D 182 REMARK 300 : BETA CHAIN - RESIDUES E 3 THROUGH E 190 REMARK 300 : PEPTIDE - RESIDUES F 306 THROUGH F 318 REMARK 300 : SUGARS - RESIDUES D 501, E 511, E 512, REMARK 300 E 521 REMARK 300 WATERS : MOL1 + MOL2 - RESIDUES 1 THROUGH 153 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY E 86 O REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 55 CG CD OE1 OE2 REMARK 480 GLU B 59 CG CD OE1 OE2 REMARK 480 GLU B 187 CG CD OE1 OE2 REMARK 480 ARG B 189 CG CD NE CZ NH1 NH2 REMARK 480 ARG D 50 CG CD NE CZ NH1 NH2 REMARK 480 GLU D 55 CG CD OE1 OE2 REMARK 480 GLU E 59 CG CD OE1 OE2 REMARK 480 GLU E 187 CG CD OE1 OE2 REMARK 480 ARG E 189 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TRP D 178 O HOH D 530 2.09 REMARK 500 N ASP E 43 O HOH E 546 2.11 REMARK 500 O TYR D 161 O HOH D 530 2.12 REMARK 500 O ASP D 142 O HOH D 524 2.14 REMARK 500 N ARG A 50 O HOH A 528 2.14 REMARK 500 N LEU B 8 O HOH B 556 2.15 REMARK 500 OD1 ASP E 41 O HOH E 546 2.17 REMARK 500 OD1 ASN B 33 O HOH B 558 2.17 REMARK 500 O PHE A 153 O HOH A 529 2.18 REMARK 500 N PHE A 51 O HOH A 528 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 150 CE2 TYR A 150 CD2 0.107 REMARK 500 GLU B 22 CG GLU B 22 CD 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 183 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 PRO D 87 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG D 146 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 PRO D 173 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 17 -30.66 -36.53 REMARK 500 GLU A 46 -37.76 -39.84 REMARK 500 ARG A 50 24.61 -79.31 REMARK 500 PHE A 51 -50.98 -150.41 REMARK 500 ASN A 78 24.15 91.01 REMARK 500 TYR A 79 35.99 72.31 REMARK 500 LEU A 92 -164.82 -129.01 REMARK 500 ARG A 100 0.79 55.93 REMARK 500 PRO A 102 138.08 -38.69 REMARK 500 PRO A 115 63.95 -66.93 REMARK 500 VAL A 117 141.02 -174.29 REMARK 500 THR A 130 95.01 -50.08 REMARK 500 PRO A 155 153.83 -47.71 REMARK 500 SER A 156 147.90 -171.99 REMARK 500 GLU A 172 144.36 177.41 REMARK 500 PRO A 173 121.87 -24.49 REMARK 500 ARG B 4 173.79 -46.54 REMARK 500 ASN B 19 18.76 54.77 REMARK 500 ASN B 33 -98.87 72.59 REMARK 500 GLN B 64 77.98 -65.56 REMARK 500 THR B 90 -85.38 -104.63 REMARK 500 LYS B 105 89.82 67.81 REMARK 500 THR B 106 89.79 -61.21 REMARK 500 GLN B 110 -15.85 78.36 REMARK 500 HIS B 112 132.96 -38.68 REMARK 500 TYR B 123 132.88 -170.34 REMARK 500 TRP B 153 34.76 78.31 REMARK 500 PRO B 183 142.29 -37.77 REMARK 500 VAL B 186 111.43 -163.08 REMARK 500 GLU D 4 -35.56 -130.53 REMARK 500 ASP D 17 -33.18 -37.90 REMARK 500 ILE D 72 -76.27 -62.72 REMARK 500 ASN D 78 32.12 91.35 REMARK 500 PRO D 102 143.35 -37.16 REMARK 500 LYS D 111 36.08 32.13 REMARK 500 THR D 130 99.51 -55.17 REMARK 500 GLU D 172 150.10 177.08 REMARK 500 PRO D 173 117.80 -27.47 REMARK 500 GLU D 179 129.69 -171.92 REMARK 500 ARG E 4 177.54 -48.40 REMARK 500 ARG E 23 115.13 92.60 REMARK 500 ASN E 33 -92.22 62.41 REMARK 500 GLN E 64 80.88 -69.80 REMARK 500 LYS E 65 -7.88 -53.54 REMARK 500 CYS E 79 -74.83 -60.68 REMARK 500 HIS E 81 -75.17 -66.57 REMARK 500 GLU E 87 -38.03 -35.13 REMARK 500 THR E 90 -82.20 -102.89 REMARK 500 LYS E 105 68.10 67.45 REMARK 500 TRP E 153 30.57 81.05 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 123 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU B 22 -10.78 REMARK 500 TYR E 123 10.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 1DLH A 3 182 UNP P01903 HA2R_HUMAN 28 207 DBREF 1DLH B 3 190 UNP P13758 HB2F_HUMAN 32 219 DBREF 1DLH C 306 318 UNP P11133 HEMA_IAZH2 306 318 DBREF 1DLH D 3 182 UNP P01903 HA2R_HUMAN 28 207 DBREF 1DLH E 3 190 UNP P13758 HB2F_HUMAN 32 219 DBREF 1DLH F 306 318 UNP P11133 HEMA_IAZH2 306 318 SEQRES 1 A 180 GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR LEU ASN SEQRES 2 A 180 PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE ASP GLY SEQRES 3 A 180 ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS GLU THR SEQRES 4 A 180 VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SER PHE SEQRES 5 A 180 GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL ASP LYS SEQRES 6 A 180 ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN TYR THR SEQRES 7 A 180 PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL LEU THR SEQRES 8 A 180 ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL LEU ILE SEQRES 9 A 180 CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL ASN VAL SEQRES 10 A 180 THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR GLY VAL SEQRES 11 A 180 SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS LEU PHE SEQRES 12 A 180 ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER THR GLU SEQRES 13 A 180 ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY LEU ASP SEQRES 14 A 180 GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP ALA SEQRES 1 B 188 THR ARG PRO ARG PHE LEU TRP GLN LEU LYS PHE GLU CYS SEQRES 2 B 188 HIS PHE PHE ASN GLY THR GLU ARG VAL ARG LEU LEU GLU SEQRES 3 B 188 ARG CYS ILE TYR ASN GLN GLU GLU SER VAL ARG PHE ASP SEQRES 4 B 188 SER ASP VAL GLY GLU TYR ARG ALA VAL THR GLU LEU GLY SEQRES 5 B 188 ARG PRO ASP ALA GLU TYR TRP ASN SER GLN LYS ASP LEU SEQRES 6 B 188 LEU GLU GLN ARG ARG ALA ALA VAL ASP THR TYR CYS ARG SEQRES 7 B 188 HIS ASN TYR GLY VAL GLY GLU SER PHE THR VAL GLN ARG SEQRES 8 B 188 ARG VAL GLU PRO LYS VAL THR VAL TYR PRO SER LYS THR SEQRES 9 B 188 GLN PRO LEU GLN HIS HIS ASN LEU LEU VAL CYS SER VAL SEQRES 10 B 188 SER GLY PHE TYR PRO GLY SER ILE GLU VAL ARG TRP PHE SEQRES 11 B 188 ARG ASN GLY GLN GLU GLU LYS ALA GLY VAL VAL SER THR SEQRES 12 B 188 GLY LEU ILE GLN ASN GLY ASP TRP THR PHE GLN THR LEU SEQRES 13 B 188 VAL MET LEU GLU THR VAL PRO ARG SER GLY GLU VAL TYR SEQRES 14 B 188 THR CYS GLN VAL GLU HIS PRO SER VAL THR SER PRO LEU SEQRES 15 B 188 THR VAL GLU TRP ARG ALA SEQRES 1 C 13 PRO LYS TYR VAL LYS GLN ASN THR LEU LYS LEU ALA THR SEQRES 1 D 180 GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR LEU ASN SEQRES 2 D 180 PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE ASP GLY SEQRES 3 D 180 ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS GLU THR SEQRES 4 D 180 VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SER PHE SEQRES 5 D 180 GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL ASP LYS SEQRES 6 D 180 ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN TYR THR SEQRES 7 D 180 PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL LEU THR SEQRES 8 D 180 ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL LEU ILE SEQRES 9 D 180 CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL ASN VAL SEQRES 10 D 180 THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR GLY VAL SEQRES 11 D 180 SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS LEU PHE SEQRES 12 D 180 ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER THR GLU SEQRES 13 D 180 ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY LEU ASP SEQRES 14 D 180 GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP ALA SEQRES 1 E 188 THR ARG PRO ARG PHE LEU TRP GLN LEU LYS PHE GLU CYS SEQRES 2 E 188 HIS PHE PHE ASN GLY THR GLU ARG VAL ARG LEU LEU GLU SEQRES 3 E 188 ARG CYS ILE TYR ASN GLN GLU GLU SER VAL ARG PHE ASP SEQRES 4 E 188 SER ASP VAL GLY GLU TYR ARG ALA VAL THR GLU LEU GLY SEQRES 5 E 188 ARG PRO ASP ALA GLU TYR TRP ASN SER GLN LYS ASP LEU SEQRES 6 E 188 LEU GLU GLN ARG ARG ALA ALA VAL ASP THR TYR CYS ARG SEQRES 7 E 188 HIS ASN TYR GLY VAL GLY GLU SER PHE THR VAL GLN ARG SEQRES 8 E 188 ARG VAL GLU PRO LYS VAL THR VAL TYR PRO SER LYS THR SEQRES 9 E 188 GLN PRO LEU GLN HIS HIS ASN LEU LEU VAL CYS SER VAL SEQRES 10 E 188 SER GLY PHE TYR PRO GLY SER ILE GLU VAL ARG TRP PHE SEQRES 11 E 188 ARG ASN GLY GLN GLU GLU LYS ALA GLY VAL VAL SER THR SEQRES 12 E 188 GLY LEU ILE GLN ASN GLY ASP TRP THR PHE GLN THR LEU SEQRES 13 E 188 VAL MET LEU GLU THR VAL PRO ARG SER GLY GLU VAL TYR SEQRES 14 E 188 THR CYS GLN VAL GLU HIS PRO SER VAL THR SER PRO LEU SEQRES 15 E 188 THR VAL GLU TRP ARG ALA SEQRES 1 F 13 PRO LYS TYR VAL LYS GLN ASN THR LEU LYS LEU ALA THR MODRES 1DLH ASN A 78 ASN GLYCOSYLATION SITE MODRES 1DLH ASN A 118 ASN GLYCOSYLATION SITE MODRES 1DLH ASN B 19 ASN GLYCOSYLATION SITE MODRES 1DLH ASN D 78 ASN GLYCOSYLATION SITE MODRES 1DLH ASN D 118 ASN GLYCOSYLATION SITE MODRES 1DLH ASN E 19 ASN GLYCOSYLATION SITE HET NAG G 1 14 HET NDG G 2 14 HET NAG H 1 14 HET NDG H 2 14 HET NAG A 501 14 HET NAG B 521 14 HET NAG D 501 14 HET NAG E 521 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE FORMUL 7 NAG 6(C8 H15 N O6) FORMUL 7 NDG 2(C8 H15 N O6) FORMUL 13 HOH *153(H2 O) HELIX 1 H1 LEU A 45 ALA A 52 5 8 HELIX 2 H2 GLU A 55 TYR A 79 1 25 HELIX 3 H3 GLU B 52 SER B 63 1 12 HELIX 4 H4 GLN B 64 ARG B 71 1 8 HELIX 5 H5 ALA B 73 VAL B 85 1 13 HELIX 6 H6 GLY B 86 ARG B 93 1 8 HELIX 7 H1 LEU D 45 ALA D 52 5 8 HELIX 8 H2 GLU D 55 TYR D 79 1 25 HELIX 9 H3 GLU E 52 SER E 63 1 12 HELIX 10 H4 GLN E 64 ARG E 71 1 8 HELIX 11 H5 ALA E 73 VAL E 85 1 13 HELIX 12 H6 GLY E 86 ARG E 93 1 8 SHEET 1 SD1 4 VAL A 85 ASN A 94 0 SHEET 2 SD1 4 ASN A 103 THR A 113 -1 N ILE A 106 O LEU A 92 SHEET 3 SD1 4 LEU A 144 PHE A 153 -1 N LEU A 151 O LEU A 105 SHEET 4 SD1 4 SER A 133 ARG A 140 -1 N SER A 133 O TYR A 150 SHEET 1 SE1 3 ASN A 118 ASN A 124 0 SHEET 2 SE1 3 VAL A 160 GLU A 166 -1 N GLU A 166 O ASN A 118 SHEET 3 SE1 3 LEU A 174 TRP A 178 -1 N LEU A 174 O VAL A 165 SHEET 1 SA1 8 LYS A 39 ARG A 44 0 SHEET 2 SA1 8 ASP A 29 ASP A 35 -1 N ASP A 35 O GLU A 40 SHEET 3 SA1 8 SER A 19 ASP A 27 -1 O PHE A 22 N VAL A 34 SHEET 4 SA1 8 HIS A 5 ASN A 15 -1 O ALA A 10 N MET A 23 SHEET 5 SA1 8 PHE B 7 PHE B 18 -1 O LEU B 11 N GLU A 11 SHEET 6 SA1 8 ARG B 23 ASN B 33 -1 O ARG B 29 N LYS B 12 SHEET 7 SA1 8 GLU B 35 SER B 42 -1 O VAL B 38 N CYS B 30 SHEET 8 SA1 8 GLY B 45 VAL B 50 -1 O ARG B 48 N ARG B 39 SHEET 1 SB1 4 LYS B 98 SER B 104 0 SHEET 2 SB1 4 ASN B 113 GLY B 121 -1 O SER B 120 N LYS B 98 SHEET 3 SB1 4 THR B 154 THR B 163 -1 O PHE B 155 N GLY B 121 SHEET 4 SB1 4 GLY B 141 ASN B 150 -1 O ILE B 148 N GLN B 156 SHEET 1 SC1 3 GLU B 128 ASN B 134 0 SHEET 2 SC1 3 GLU B 169 GLU B 176 -1 N THR B 172 O PHE B 132 SHEET 3 SC1 3 LEU B 184 ALA B 190 -1 N TRP B 188 O TYR B 171 SHEET 1 SD2 4 VAL D 85 ASN D 94 0 SHEET 2 SD2 4 ASN D 103 THR D 113 -1 N ILE D 106 O LEU D 92 SHEET 3 SD2 4 LEU D 144 PHE D 153 -1 N LEU D 151 O LEU D 105 SHEET 4 SD2 4 SER D 133 ARG D 140 -1 N SER D 133 O TYR D 150 SHEET 1 SE2 3 ASN D 118 ASN D 124 0 SHEET 2 SE2 3 VAL D 160 GLU D 166 -1 N GLU D 166 O ASN D 118 SHEET 3 SE2 3 LEU D 174 TRP D 178 -1 N LEU D 174 O VAL D 165 SHEET 1 SA2 8 LYS D 39 ARG D 44 0 SHEET 2 SA2 8 ASP D 29 ASP D 35 -1 N ASP D 35 O GLU D 40 SHEET 3 SA2 8 SER D 19 ASP D 27 -1 O PHE D 22 N VAL D 34 SHEET 4 SA2 8 HIS D 5 ASN D 15 -1 O ALA D 10 N MET D 23 SHEET 5 SA2 8 PHE E 7 PHE E 18 -1 O LEU E 11 N GLU D 11 SHEET 6 SA2 8 ARG E 23 ASN E 33 -1 O ARG E 29 N LYS E 12 SHEET 7 SA2 8 GLU E 35 SER E 42 -1 O VAL E 38 N CYS E 30 SHEET 8 SA2 8 GLY E 45 VAL E 50 -1 O ARG E 48 N ARG E 39 SHEET 1 SB2 4 LYS E 98 SER E 104 0 SHEET 2 SB2 4 ASN E 113 GLY E 121 -1 O SER E 120 N LYS E 98 SHEET 3 SB2 4 THR E 154 THR E 163 -1 O PHE E 155 N GLY E 121 SHEET 4 SB2 4 GLY E 141 ASN E 150 -1 O ILE E 148 N GLN E 156 SHEET 1 SC2 3 GLU E 128 ASN E 134 0 SHEET 2 SC2 3 GLU E 169 GLU E 176 -1 N THR E 172 O PHE E 132 SHEET 3 SC2 3 LEU E 184 ALA E 190 -1 N TRP E 188 O TYR E 171 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.01 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.05 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.03 SSBOND 4 CYS D 107 CYS D 163 1555 1555 2.02 SSBOND 5 CYS E 15 CYS E 79 1555 1555 2.07 SSBOND 6 CYS E 117 CYS E 173 1555 1555 2.02 LINK ND2 ASN A 78 C1 NAG A 501 1555 1555 1.45 LINK ND2 ASN A 118 C1 NAG G 1 1555 1555 1.48 LINK ND2 ASN B 19 C1 NAG B 521 1555 1555 1.45 LINK ND2 ASN D 78 C1 NAG D 501 1555 1555 1.47 LINK ND2 ASN D 118 C1 NAG H 1 1555 1555 1.46 LINK ND2 ASN E 19 C1 NAG E 521 1555 1555 1.49 LINK O4 NAG G 1 C1 NDG G 2 1555 1555 1.40 LINK O4 NAG H 1 C1 NDG H 2 1555 1555 1.41 CISPEP 1 ASN A 15 PRO A 16 0 -0.17 CISPEP 2 THR A 113 PRO A 114 0 0.29 CISPEP 3 TYR B 123 PRO B 124 0 -1.44 CISPEP 4 ASN D 15 PRO D 16 0 0.71 CISPEP 5 THR D 113 PRO D 114 0 -1.61 CISPEP 6 TYR E 123 PRO E 124 0 1.51 CRYST1 94.600 94.600 247.500 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010571 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004040 0.00000 MTRIX1 1 0.288900 -0.592500 0.752000 19.05400 1 MTRIX2 1 -0.547200 -0.746700 -0.378200 102.17100 1 MTRIX3 1 0.785600 -0.302200 -0.539900 43.10500 1