PDB Short entry for 1DMR HEADER OXIDOREDUCTASE 22-APR-97 1DMR TITLE OXIDIZED DMSO REDUCTASE FROM RHODOBACTER CAPSULATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DMSO REDUCTASE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS; SOURCE 3 ORGANISM_TAXID: 1061; SOURCE 4 STRAIN: H123; SOURCE 5 CELLULAR_LOCATION: PERIPLASM KEYWDS OXIDOREDUCTASE, REDUCTASE, DMSO, MOLYBDOPTERIN EXPDTA X-RAY DIFFRACTION AUTHOR A.S.MCALPINE,S.BAILEY REVDAT 4 03-APR-24 1DMR 1 REMARK REVDAT 3 21-DEC-22 1DMR 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1DMR 1 VERSN REVDAT 1 18-MAR-98 1DMR 0 JRNL AUTH A.S.MCALPINE,A.G.MCEWAN,A.SHAW,S.BAILEY JRNL TITL MOLYBDENUM ACTIVE CENTRE OF DMSO REDUCTASE FROM RHODOBACTER JRNL TITL 2 CAPSULATUS: CRYSTAL STRUCTURE OF THE OXIDISED ENZYME AT JRNL TITL 3 1.82-A RESOLUTION AND THE DITHIONITE-REDUCED ENZYME AT 2.8-A JRNL TITL 4 RESOLUTION JRNL REF J.BIOL.INORG.CHEM. V. 2 690 1997 JRNL REFN ISSN 0949-8257 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 68911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : EVERY 20TH REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3441 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5972 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 536 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-96 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 4.8-5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66800 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 16.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.26900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS REPLACEMENT REMARK 200 AND MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: DMSO REDUCTASE FROM RHODOBACTER SPHAEROIDES REMARK 200 REMARK 200 REMARK: MODEL WAS FITTED TO THE PARTIAL MODEL FROM ISOMORPHOUS REMARK 200 REPLACEMENT REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRATE BUFFER, PH 4.8 - 5.2 20 - REMARK 280 23% PEG 4000 20% ETHANOL, PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.85000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.44000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.42500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.44000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 172.27500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.44000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.44000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.42500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.44000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.44000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 172.27500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 114.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -41 REMARK 465 THR A -40 REMARK 465 LYS A -39 REMARK 465 PHE A -38 REMARK 465 SER A -37 REMARK 465 GLY A -36 REMARK 465 ASN A -35 REMARK 465 GLU A -34 REMARK 465 LEU A -33 REMARK 465 ARG A -32 REMARK 465 ALA A -31 REMARK 465 GLU A -30 REMARK 465 LEU A -29 REMARK 465 TYR A -28 REMARK 465 ARG A -27 REMARK 465 ARG A -26 REMARK 465 ALA A -25 REMARK 465 PHE A -24 REMARK 465 LEU A -23 REMARK 465 SER A -22 REMARK 465 TYR A -21 REMARK 465 SER A -20 REMARK 465 VAL A -19 REMARK 465 ALA A -18 REMARK 465 PRO A -17 REMARK 465 GLY A -16 REMARK 465 ALA A -15 REMARK 465 LEU A -14 REMARK 465 GLY A -13 REMARK 465 MET A -12 REMARK 465 PHE A -11 REMARK 465 GLY A -10 REMARK 465 ARG A -9 REMARK 465 SER A -8 REMARK 465 LEU A -7 REMARK 465 LEU A -6 REMARK 465 ALA A -5 REMARK 465 LYS A -4 REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 ARG A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 ALA A 2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ALA A 381 REMARK 475 ALA A 382 REMARK 475 THR A 383 REMARK 475 LYS A 384 REMARK 475 GLY A 385 REMARK 475 PRO A 386 REMARK 475 GLU A 387 REMARK 475 TRP A 388 REMARK 475 LEU A 389 REMARK 475 ALA A 390 REMARK 475 ALA A 391 REMARK 475 SER A 392 REMARK 475 GLY A 393 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 63 O HOH A 847 1.25 REMARK 500 O O A 785 O O A 786 1.93 REMARK 500 OE2 GLU A 63 O HOH A 1066 2.16 REMARK 500 OG SER A 147 O O A 785 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG2 THR A 418 O HOH A 1307 5445 1.93 REMARK 500 NZ LYS A 634 O HOH A 1232 3555 1.95 REMARK 500 CG GLU A 229 O HOH A 1276 5455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 380 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 LYS A 384 C - N - CA ANGL. DEV. = 17.3 DEGREES REMARK 500 ARG A 442 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 693 CD - NE - CZ ANGL. DEV. = 38.7 DEGREES REMARK 500 ARG A 693 NH1 - CZ - NH2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 693 NE - CZ - NH1 ANGL. DEV. = -6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 37 80.62 -160.56 REMARK 500 LYS A 117 -138.32 40.62 REMARK 500 GLU A 163 -43.21 72.74 REMARK 500 GLN A 241 11.77 81.19 REMARK 500 ARG A 326 49.55 -93.80 REMARK 500 SER A 357 30.17 -140.04 REMARK 500 THR A 383 -116.11 -125.14 REMARK 500 LYS A 384 80.51 138.47 REMARK 500 LEU A 389 148.47 -170.77 REMARK 500 ALA A 390 155.59 -40.99 REMARK 500 ALA A 391 137.92 88.16 REMARK 500 SER A 392 -14.43 73.16 REMARK 500 PHE A 415 113.17 -160.98 REMARK 500 TYR A 506 -129.01 45.88 REMARK 500 THR A 573 -83.84 -103.07 REMARK 500 CYS A 615 82.37 -151.59 REMARK 500 HIS A 649 -118.68 56.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 6MO A 784 MO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 147 OG REMARK 620 2 PGD A 782 S12 125.8 REMARK 620 3 PGD A 782 S13 90.2 77.4 REMARK 620 4 PGD A 783 S12 76.0 151.3 84.9 REMARK 620 5 PGD A 783 S13 142.6 90.3 109.2 74.3 REMARK 620 6 O A 785 O 77.0 49.1 80.1 149.0 136.4 REMARK 620 7 O A 786 O 92.7 75.3 148.1 126.5 87.0 69.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: MO REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: SER SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGD A 782 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGD A 783 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6MO A 784 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O A 785 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O A 786 DBREF 1DMR A -41 781 UNP Q52675 DMSA_RHOCA 1 823 SEQADV 1DMR SER A 39 UNP Q52675 THR 81 CONFLICT SEQADV 1DMR ALA A 43 UNP Q52675 GLU 85 CONFLICT SEQADV 1DMR GLU A 107 UNP Q52675 GLN 149 CONFLICT SEQADV 1DMR GLU A 234 UNP Q52675 ASP 276 CONFLICT SEQADV 1DMR ILE A 236 UNP Q52675 VAL 278 CONFLICT SEQADV 1DMR ASP A 280 UNP Q52675 MET 322 CONFLICT SEQADV 1DMR GLU A 294 UNP Q52675 SER 336 CONFLICT SEQADV 1DMR GLY A 295 UNP Q52675 ASP 337 CONFLICT SEQADV 1DMR GLU A 312 UNP Q52675 ILE 354 CONFLICT SEQADV 1DMR ALA A 374 UNP Q52675 SER 416 CONFLICT SEQADV 1DMR VAL A 456 UNP Q52675 ILE 498 CONFLICT SEQADV 1DMR ALA A 526 UNP Q52675 LYS 568 CONFLICT SEQADV 1DMR ALA A 552 UNP Q52675 GLY 594 CONFLICT SEQADV 1DMR GLN A 555 UNP Q52675 GLU 597 CONFLICT SEQRES 1 A 823 MET THR LYS PHE SER GLY ASN GLU LEU ARG ALA GLU LEU SEQRES 2 A 823 TYR ARG ARG ALA PHE LEU SER TYR SER VAL ALA PRO GLY SEQRES 3 A 823 ALA LEU GLY MET PHE GLY ARG SER LEU LEU ALA LYS GLY SEQRES 4 A 823 ALA ARG ALA GLU ALA LEU ALA ASN GLY THR VAL MET SER SEQRES 5 A 823 GLY SER HIS TRP GLY VAL PHE THR ALA THR VAL GLU ASN SEQRES 6 A 823 GLY ARG ALA THR ALA PHE THR PRO TRP GLU LYS ASP PRO SEQRES 7 A 823 HIS PRO SER PRO MET LEU ALA GLY VAL LEU ASP SER ILE SEQRES 8 A 823 TYR SER PRO THR ARG ILE LYS TYR PRO MET VAL ARG ARG SEQRES 9 A 823 GLU PHE LEU GLU LYS GLY VAL ASN ALA ASP ARG SER THR SEQRES 10 A 823 ARG GLY ASN GLY ASP PHE VAL ARG VAL SER TRP ASP GLN SEQRES 11 A 823 ALA LEU ASP LEU VAL ALA ALA GLU VAL LYS ARG VAL GLU SEQRES 12 A 823 GLU THR TYR GLY PRO GLU GLY VAL PHE GLY GLY SER TYR SEQRES 13 A 823 GLY TRP LYS SER PRO GLY ARG LEU HIS ASN CYS THR THR SEQRES 14 A 823 LEU LEU ARG ARG MET LEU THR LEU ALA GLY GLY TYR VAL SEQRES 15 A 823 ASN GLY ALA GLY ASP TYR SER THR GLY ALA ALA GLN VAL SEQRES 16 A 823 ILE MET PRO HIS VAL VAL GLY THR LEU GLU VAL TYR GLU SEQRES 17 A 823 GLN GLN THR ALA TRP PRO VAL LEU ALA GLU ASN THR GLU SEQRES 18 A 823 VAL MET VAL PHE TRP ALA ALA ASP PRO ILE LYS THR SER SEQRES 19 A 823 GLN ILE GLY TRP VAL ILE PRO GLU HIS GLY ALA TYR PRO SEQRES 20 A 823 GLY LEU GLU ALA LEU LYS ALA LYS GLY THR LYS VAL ILE SEQRES 21 A 823 VAL ILE ASP PRO VAL ARG THR LYS THR VAL GLU PHE PHE SEQRES 22 A 823 GLY ALA GLU HIS ILE THR PRO LYS PRO GLN THR ASP VAL SEQRES 23 A 823 ALA ILE MET LEU GLY MET ALA HIS THR LEU VAL ALA GLU SEQRES 24 A 823 ASP LEU TYR ASP LYS ASP PHE ILE ALA ASN TYR THR SER SEQRES 25 A 823 GLY PHE ASP LYS PHE LEU PRO TYR LEU ASP GLY GLU THR SEQRES 26 A 823 ASP SER THR PRO LYS THR ALA GLU TRP ALA GLU GLY ILE SEQRES 27 A 823 SER GLY VAL PRO ALA GLU THR ILE LYS GLU LEU ALA ARG SEQRES 28 A 823 LEU PHE GLU SER LYS ARG THR MET LEU ALA ALA GLY TRP SEQRES 29 A 823 SER MET GLN ARG MET HIS HIS GLY GLU GLN ALA HIS TRP SEQRES 30 A 823 MET LEU VAL THR LEU ALA SER MET LEU GLY GLN ILE GLY SEQRES 31 A 823 LEU PRO GLY GLY GLY PHE GLY LEU SER TYR HIS TYR SER SEQRES 32 A 823 GLY GLY GLY THR PRO SER THR SER GLY PRO ALA LEU ALA SEQRES 33 A 823 GLY ILE THR ASP GLY GLY ALA ALA THR LYS GLY PRO GLU SEQRES 34 A 823 TRP LEU ALA ALA SER GLY ALA SER VAL ILE PRO VAL ALA SEQRES 35 A 823 ARG VAL VAL ASP MET LEU GLU ASN PRO GLY ALA GLU PHE SEQRES 36 A 823 ASP PHE ASN GLY THR ARG SER LYS PHE PRO ASP VAL LYS SEQRES 37 A 823 MET ALA TYR TRP VAL GLY GLY ASN PRO PHE VAL HIS HIS SEQRES 38 A 823 GLN ASP ARG ASN ARG MET VAL LYS ALA TRP GLU LYS LEU SEQRES 39 A 823 GLU THR PHE VAL VAL HIS ASP PHE GLN TRP THR PRO THR SEQRES 40 A 823 ALA ARG HIS ALA ASP ILE VAL LEU PRO ALA THR THR SER SEQRES 41 A 823 TYR GLU ARG ASN ASP ILE GLU THR ILE GLY ASP TYR SER SEQRES 42 A 823 ASN THR GLY ILE LEU ALA MET LYS LYS ILE VAL GLU PRO SEQRES 43 A 823 LEU TYR GLU ALA ARG SER ASP TYR ASP ILE PHE ALA ALA SEQRES 44 A 823 VAL ALA GLU ARG LEU GLY LYS GLY ALA GLU PHE THR GLU SEQRES 45 A 823 GLY LYS ASP GLU MET GLY TRP ILE LYS SER PHE TYR ASP SEQRES 46 A 823 ASP ALA ALA LYS GLN GLY LYS ALA ALA GLY VAL GLN MET SEQRES 47 A 823 PRO ALA PHE ASP ALA PHE TRP ALA GLU GLY ILE VAL GLU SEQRES 48 A 823 PHE PRO VAL THR ASP GLY ALA ASP PHE VAL ARG TYR ALA SEQRES 49 A 823 SER PHE ARG GLU ASP PRO LEU LEU ASN PRO LEU GLY THR SEQRES 50 A 823 PRO THR GLY LEU ILE GLU ILE TYR SER LYS ASN ILE GLU SEQRES 51 A 823 LYS MET GLY TYR ASP ASP CYS PRO ALA HIS PRO THR TRP SEQRES 52 A 823 MET GLU PRO LEU GLU ARG LEU ASP GLY PRO GLY ALA LYS SEQRES 53 A 823 TYR PRO LEU HIS ILE ALA ALA SER HIS PRO PHE ASN ARG SEQRES 54 A 823 LEU HIS SER GLN LEU ASN GLY THR VAL LEU ARG GLU GLY SEQRES 55 A 823 TYR ALA VAL GLN GLY HIS GLU PRO CYS LEU MET HIS PRO SEQRES 56 A 823 ASP ASP ALA ALA ALA ARG GLY ILE ALA ASP GLY ASP VAL SEQRES 57 A 823 VAL ARG VAL HIS ASN ASP ARG GLY GLN ILE LEU THR GLY SEQRES 58 A 823 VAL LYS VAL THR ASP ALA VAL MET LYS GLY VAL ILE GLN SEQRES 59 A 823 ILE TYR GLU GLY GLY TRP TYR ASP PRO SER ASP VAL THR SEQRES 60 A 823 GLU PRO GLY THR LEU ASP LYS TYR GLY ASP VAL ASN VAL SEQRES 61 A 823 LEU SER ALA ASP ILE GLY THR SER LYS LEU ALA GLN GLY SEQRES 62 A 823 ASN CYS GLY GLN THR VAL LEU ALA GLU VAL GLU LYS TYR SEQRES 63 A 823 THR GLY PRO ALA VAL THR LEU THR GLY PHE VAL ALA PRO SEQRES 64 A 823 LYS ALA ALA GLU HET PGD A 782 47 HET PGD A 783 47 HET 6MO A 784 1 HET O A 785 1 HET O A 786 1 HETNAM PGD 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8- HETNAM 2 PGD OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE HETNAM 3 PGD DINUCLEOTIDE HETNAM 6MO MOLYBDENUM(VI) ION HETNAM O OXYGEN ATOM FORMUL 2 PGD 2(C20 H24 N10 O13 P2 S2) FORMUL 4 6MO MO 6+ FORMUL 5 O 2(O) FORMUL 7 HOH *536(H2 O) HELIX 1 1 PRO A 40 TYR A 50 5 11 HELIX 2 2 ARG A 62 ASN A 70 1 9 HELIX 3 3 ARG A 73 THR A 75 5 3 HELIX 4 4 TRP A 86 TYR A 104 1 19 HELIX 5 5 PRO A 106 GLY A 108 5 3 HELIX 6 6 CYS A 125 ALA A 136 1 12 HELIX 7 7 ALA A 151 VAL A 158 1 8 HELIX 8 8 TRP A 171 ASN A 177 1 7 HELIX 9 9 PRO A 188 GLN A 193 1 6 HELIX 10 10 GLY A 202 LYS A 213 1 12 HELIX 11 11 LYS A 226 PHE A 231 1 6 HELIX 12 12 ASP A 243 ALA A 256 1 14 HELIX 13 13 LYS A 262 TYR A 268 1 7 HELIX 14 14 PHE A 272 LEU A 279 1 8 HELIX 15 15 ALA A 290 SER A 297 1 8 HELIX 16 16 ALA A 301 SER A 313 1 13 HELIX 17 17 SER A 323 GLN A 325 5 3 HELIX 18 18 GLY A 330 LEU A 344 5 15 HELIX 19 19 GLY A 380 ALA A 382 5 3 HELIX 20 20 VAL A 399 GLU A 407 5 9 HELIX 21 21 PRO A 435 HIS A 438 1 4 HELIX 22 22 ARG A 442 LYS A 451 1 10 HELIX 23 23 PRO A 464 HIS A 468 1 5 HELIX 24 24 SER A 478 GLU A 480 5 3 HELIX 25 25 ASP A 511 ARG A 521 1 11 HELIX 26 26 GLY A 525 THR A 529 1 5 HELIX 27 27 GLU A 534 ALA A 552 1 19 HELIX 28 28 PHE A 559 GLU A 565 1 7 HELIX 29 29 GLY A 575 ASP A 577 5 3 HELIX 30 30 ALA A 582 GLU A 586 1 5 HELIX 31 31 LYS A 605 MET A 610 1 6 HELIX 32 32 VAL A 656 GLY A 660 5 5 HELIX 33 33 PRO A 673 ARG A 679 1 7 HELIX 34 34 VAL A 736 VAL A 738 5 3 SHEET 1 A 3 GLY A 6 SER A 12 0 SHEET 2 A 3 GLY A 15 GLU A 22 -1 N VAL A 21 O GLY A 6 SHEET 3 A 3 ARG A 25 PRO A 31 -1 N THR A 30 O THR A 18 SHEET 1 B 2 MET A 59 ARG A 61 0 SHEET 2 B 2 PHE A 81 ARG A 83 -1 N VAL A 82 O VAL A 60 SHEET 1 C 2 ASN A 141 ALA A 143 0 SHEET 2 C 2 VAL A 396 PRO A 398 1 N ILE A 397 O ASN A 141 SHEET 1 D 5 GLY A 353 GLY A 355 0 SHEET 2 D 5 THR A 316 ALA A 320 1 N LEU A 318 O GLY A 353 SHEET 3 D 5 VAL A 180 TRP A 184 1 N VAL A 180 O MET A 317 SHEET 4 D 5 LYS A 216 ILE A 220 1 N LYS A 216 O MET A 181 SHEET 5 D 5 GLU A 234 ILE A 236 1 N GLU A 234 O VAL A 219 SHEET 1 E 2 GLU A 412 PHE A 415 0 SHEET 2 E 2 THR A 418 LYS A 421 -1 N SER A 420 O PHE A 413 SHEET 1 F 3 MET A 427 VAL A 431 0 SHEET 2 F 3 THR A 454 ASP A 459 1 N THR A 454 O ALA A 428 SHEET 3 F 3 ILE A 471 PRO A 474 1 N ILE A 471 O VAL A 457 SHEET 1 G 3 ASP A 483 ILE A 487 0 SHEET 2 G 3 GLY A 494 MET A 498 -1 N MET A 498 O ASP A 483 SHEET 3 G 3 ILE A 567 GLU A 569 -1 N VAL A 568 O ILE A 495 SHEET 1 H 2 HIS A 638 ALA A 640 0 SHEET 2 H 2 VAL A 710 GLN A 712 1 N ILE A 711 O HIS A 638 SHEET 1 I 4 PRO A 668 MET A 671 0 SHEET 2 I 4 GLN A 695 VAL A 702 1 N GLY A 699 O CYS A 669 SHEET 3 I 4 VAL A 686 HIS A 690 -1 N VAL A 689 O ILE A 696 SHEET 4 I 4 GLU A 760 LYS A 763 -1 N GLU A 762 O ARG A 688 LINK S12 PGD A 782 O O A 785 1555 1555 1.90 LINK OG SER A 147 MO 6MO A 784 1555 1555 1.90 LINK S12 PGD A 782 MO 6MO A 784 1555 1555 2.51 LINK S13 PGD A 782 MO 6MO A 784 1555 1555 2.48 LINK S12 PGD A 783 MO 6MO A 784 1555 1555 2.55 LINK S13 PGD A 783 MO 6MO A 784 1555 1555 2.42 LINK MO 6MO A 784 O O A 785 1555 1555 1.55 LINK MO 6MO A 784 O O A 786 1555 1555 1.81 SITE 1 MO 1 SER A 147 SITE 1 AC1 38 TYR A 114 GLY A 115 TRP A 116 LYS A 117 SITE 2 AC1 38 SER A 118 TYR A 146 SER A 147 ARG A 326 SITE 3 AC1 38 GLY A 432 GLY A 433 ASN A 434 HIS A 438 SITE 4 AC1 38 GLN A 440 HIS A 458 ASP A 459 PHE A 460 SITE 5 AC1 38 THR A 463 ALA A 475 ARG A 481 ASP A 511 SITE 6 AC1 38 ALA A 641 HIS A 643 HIS A 649 SER A 650 SITE 7 AC1 38 GLN A 651 GLU A 715 ASN A 737 GLY A 754 SITE 8 AC1 38 GLN A 755 PGD A 783 6MO A 784 O A 785 SITE 9 AC1 38 O A 786 HOH A 799 HOH A 814 HOH A 832 SITE 10 AC1 38 HOH A 840 HOH A 915 SITE 1 AC2 35 TRP A 116 SER A 147 ALA A 185 LYS A 190 SITE 2 AC2 35 THR A 191 GLN A 193 ILE A 194 ILE A 220 SITE 3 AC2 35 ASP A 221 PRO A 222 THR A 225 PRO A 240 SITE 4 AC2 35 GLN A 241 ASP A 243 GLY A 321 TRP A 322 SITE 5 AC2 35 SER A 323 ARG A 326 MET A 327 HIS A 359 SITE 6 AC2 35 SER A 642 HIS A 643 PRO A 644 PHE A 645 SITE 7 AC2 35 ARG A 647 LEU A 648 HIS A 649 GLN A 755 SITE 8 AC2 35 PGD A 782 6MO A 784 O A 786 HOH A 801 SITE 9 AC2 35 HOH A 813 HOH A 824 HOH A 854 SITE 1 AC3 5 SER A 147 PGD A 782 PGD A 783 O A 785 SITE 2 AC3 5 O A 786 SITE 1 AC4 5 TYR A 114 SER A 147 PGD A 782 6MO A 784 SITE 2 AC4 5 O A 786 SITE 1 AC5 8 TYR A 114 TRP A 116 SER A 147 PGD A 782 SITE 2 AC5 8 PGD A 783 6MO A 784 O A 785 HOH A 974 CRYST1 80.880 80.880 229.700 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012364 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004354 0.00000