PDB Short entry for 1DN3 HEADER DE NOVO PROTEIN 16-DEC-99 1DN3 TITLE NMR STRUCTURE OF A MODEL HYDROPHILIC AMPHIPATHIC HELICAL BASIC PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN PLATELET FACTOR 4, SEGMENT 59-73; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: CHEMICALLY SYNTHESIZED SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS HYDROPHILIC AMPHIPATHIC BASIC HELIX MODEL, DE NOVO PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR R.MONTSERRET,M.J.MCLEISH,A.BOCKMANN,C.GEOURJON,F.PENIN REVDAT 6 10-APR-24 1DN3 1 SEQADV REVDAT 5 29-AUG-18 1DN3 1 COMPND SOURCE REVDAT 4 14-MAR-18 1DN3 1 REMARK SEQADV REVDAT 3 24-FEB-09 1DN3 1 VERSN REVDAT 2 16-AUG-00 1DN3 1 JRNL REVDAT 1 12-JAN-00 1DN3 0 JRNL AUTH R.MONTSERRET,M.J.MCLEISH,A.BOCKMANN,C.GEOURJON,F.PENIN JRNL TITL INVOLVEMENT OF ELECTROSTATIC INTERACTIONS IN THE MECHANISM JRNL TITL 2 OF PEPTIDE FOLDING INDUCED BY SODIUM DODECYL SULFATE JRNL TITL 3 BINDING. JRNL REF BIOCHEMISTRY V. 39 8362 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 10913242 JRNL DOI 10.1021/BI000208X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DN3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000010224. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 40 MM D25 SODIUM DODECYL SULFATE REMARK 210 98% 10 MM SODIUM PHOSPHATE REMARK 210 BUFFER PH 6.0 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; DQF COSY; TOCSY; 1H 13C REMARK 210 HSQC; 1H 13C HSQC TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1, X-PLOR 3.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR AND 1H-13C HETERONUCLEAR METHODS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 3 -9.48 -58.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RHP RELATED DB: PDB REMARK 900 HUMAN PLATELET FACTOR 4, SEGMENT 56-70 REMARK 900 RELATED ID: 1DJF RELATED DB: PDB REMARK 900 MODEL HYDROPHILIC AMPHIPATHIC HELICAL BASIC PEPTIDE DBREF 1DN3 A 1 15 UNP P02776 PLF4_HUMAN 59 73 SEQADV 1DN3 ALA A 4 UNP P02776 LEU 62 ENGINEERED MUTATION SEQADV 1DN3 ALA A 8 UNP P02776 ILE 66 ENGINEERED MUTATION SEQADV 1DN3 ALA A 9 UNP P02776 ILE 67 ENGINEERED MUTATION SEQADV 1DN3 ALA A 13 UNP P02776 LEU 71 ENGINEERED MUTATION SEQRES 1 A 15 GLN ALA PRO ALA TYR LYS LYS ALA ALA LYS LYS LEU ALA SEQRES 2 A 15 GLU SER HELIX 1 1 PRO A 3 GLU A 14 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000