PDB Short entry for 1DNQ HEADER TRANSFERASE 16-DEC-99 1DNQ TITLE THEORETICAL MODEL OF THE FIRST AND SECOND DOMAINS OF THE TITLE 2 HUMAN EPIDERMAL GROWTH FACTOR RECEPTOR ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: L1 AND S1 DOMAINS; COMPND 5 EC: 2.7.1.112 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS EPIDERMAL GROWTH FACTOR, TYROSINE KINASE, RECEPTOR EXPDTA THEORETICAL MODEL AUTHOR R.N.JORISSEN,V.C.EPA,H.R.TREUTLEIN,T.P.J.GARRETT,C.W.WARD, AUTHOR 2 A.W.BURGESS REVDAT 2 01-APR-03 1DNQ 1 JRNL REVDAT 1 12-APR-00 1DNQ 0 JRNL AUTH R.N.JORISSEN,V.C.EPA,H.R.TREUTLEIN,T.P.GARRETT, JRNL AUTH 2 C.W.WARD,A.W.BURGESS JRNL TITL CHARACTERIZATION OF A COMPARATIVE MODEL OF THE JRNL TITL 2 EXTRACELLULAR DOMAIN OF THE EPIDERMAL GROWTH JRNL TITL 3 FACTOR RECEPTOR. JRNL REF PROTEIN SCI. V. 9 310 2000 JRNL REFN ASTM PRCIEI US ISSN 0961-8368 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.P.GARRETT,N.M.MCKERN,M.LOU,M.J.FRENKEL, REMARK 1 AUTH 2 BENTLEY. J.D.,G.O.LOVRECZ,T.C.ELLEMAN,L.J.COSGROVE, REMARK 1 AUTH 3 C.W.WARD REMARK 1 TITL CRYSTAL STRUCTURE OF THE FIRST THREE DOMAINS OF REMARK 1 TITL 2 THE TYPE-1 INSULIN-LIKE GROWTH FACTOR RECEPTOR REMARK 1 REF NATURE V. 394 395 1998 REMARK 1 REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELLER REMARK 3 AUTHORS : SALI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DNQ COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 6 REMARK 6 NUMBERS IN COLUMN RESERVED FOR B-FACTORS REPRESENT REMARK 6 CONFIDENCE IN MAINCHAIN COORDINATES OF A GIVEN RESIDUE. REMARK 6 20 - HIGH CONFIDENCE IN COORDINATES. 40 - POSSIBILITY OF REMARK 6 ERROR IN COORDINATES. 60 - NO CONFIDENCE IN COORDINATES REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-1999. REMARK 100 THE RCSB ID CODE IS RCSB010228. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THE COORDINATES IN THIS ENTRY REPRESENT A MODEL REMARK 220 STRUCTURE. THE MODEL WAS CREATED BY HOMOLOGY MODELLING REMARK 220 USING THE REFERENCE PROTEIN INSULIN-LIKE GROWTH FACTOR-1 REMARK 220 RECEPTOR DOMAINS 1-3. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 214 -82.23 83.72 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DNR RELATED DB: PDB DBREF 1DNQ A 1 312 UNP P00533 EGFR_HUMAN 25 336 SEQRES 1 A 312 LEU GLU GLU LYS LYS VAL CYS GLN GLY THR SER ASN LYS SEQRES 2 A 312 LEU THR GLN LEU GLY THR PHE GLU ASP HIS PHE LEU SER SEQRES 3 A 312 LEU GLN ARG MET PHE ASN ASN CYS GLU VAL VAL LEU GLY SEQRES 4 A 312 ASN LEU GLU ILE THR TYR VAL GLN ARG ASN TYR ASP LEU SEQRES 5 A 312 SER PHE LEU LYS THR ILE GLN GLU VAL ALA GLY TYR VAL SEQRES 6 A 312 LEU ILE ALA LEU ASN THR VAL GLU ARG ILE PRO LEU GLU SEQRES 7 A 312 ASN LEU GLN ILE ILE ARG GLY ASN MET TYR TYR GLU ASN SEQRES 8 A 312 SER TYR ALA LEU ALA VAL LEU SER ASN TYR ASP ALA ASN SEQRES 9 A 312 LYS THR GLY LEU LYS GLU LEU PRO MET ARG ASN LEU GLN SEQRES 10 A 312 GLU ILE LEU HIS GLY ALA VAL ARG PHE SER ASN ASN PRO SEQRES 11 A 312 ALA LEU CYS ASN VAL GLU SER ILE GLN TRP ARG ASP ILE SEQRES 12 A 312 VAL SER SER ASP PHE LEU SER ASN MET SER MET ASP PHE SEQRES 13 A 312 GLN ASN HIS LEU GLY SER CYS GLN LYS CYS ASP PRO SER SEQRES 14 A 312 CYS PRO ASN GLY SER CYS TRP GLY ALA GLY GLU GLU ASN SEQRES 15 A 312 CYS GLN LYS LEU THR LYS ILE ILE CYS ALA GLN GLN CYS SEQRES 16 A 312 SER GLY ARG CYS ARG GLY LYS SER PRO SER ASP CYS CYS SEQRES 17 A 312 HIS ASN GLN CYS ALA ALA GLY CYS THR GLY PRO ARG GLU SEQRES 18 A 312 SER ASP CYS LEU VAL CYS ARG LYS PHE ARG ASP GLU ALA SEQRES 19 A 312 THR CYS LYS ASP THR CYS PRO PRO LEU MET LEU TYR ASN SEQRES 20 A 312 PRO THR THR TYR GLN MET ASP VAL ASN PRO GLU GLY LYS SEQRES 21 A 312 TYR SER PHE GLY ALA THR CYS VAL LYS LYS CYS PRO ARG SEQRES 22 A 312 ASN TYR VAL VAL THR ASP HIS GLY SER CYS VAL ARG ALA SEQRES 23 A 312 CYS GLY ALA ASP SER TYR GLU MET GLU GLU ASP GLY VAL SEQRES 24 A 312 ARG LYS CYS LYS LYS CYS GLU GLY PRO CYS ARG LYS VAL HELIX 1 1 HIS A 23 SER A 26 5 4 HELIX 2 2 LEU A 27 CYS A 34 1 8 HELIX 3 3 ASP A 51 LEU A 55 5 5 HELIX 4 4 GLN A 139 VAL A 144 1 6 HELIX 5 5 SER A 145 MET A 152 1 8 SHEET 1 A 4 VAL A 6 CYS A 7 0 SHEET 2 A 4 VAL A 36 VAL A 37 1 O VAL A 36 N CYS A 7 SHEET 3 A 4 GLU A 60 VAL A 61 1 O GLU A 60 N VAL A 37 SHEET 4 A 4 ILE A 82 ILE A 83 1 O ILE A 82 N VAL A 61 SHEET 1 B 6 LYS A 13 LEU A 14 0 SHEET 2 B 6 LEU A 41 GLN A 47 1 O GLU A 42 N LEU A 14 SHEET 3 B 6 VAL A 65 ASN A 70 1 N LEU A 66 O LEU A 41 SHEET 4 B 6 TYR A 93 LEU A 98 1 O ALA A 94 N VAL A 65 SHEET 5 B 6 ALA A 123 SER A 127 1 O ALA A 123 N ALA A 94 SHEET 6 B 6 SER A 153 MET A 154 1 N SER A 153 O VAL A 124 SHEET 1 C 2 CYS A 212 CYS A 216 0 SHEET 2 C 2 CYS A 224 CYS A 227 -1 N LEU A 225 O GLY A 215 SHEET 1 D 2 PHE A 230 ASP A 232 0 SHEET 2 D 2 THR A 235 LYS A 237 -1 O THR A 235 N ASP A 232 SHEET 1 E 2 TYR A 261 PHE A 263 0 SHEET 2 E 2 THR A 266 VAL A 268 -1 O THR A 266 N PHE A 263 SHEET 1 F 2 VAL A 276 THR A 278 0 SHEET 2 F 2 SER A 282 VAL A 284 -1 O SER A 282 N THR A 278 SHEET 1 G 2 SER A 291 GLU A 293 0 SHEET 2 G 2 CYS A 302 LYS A 304 -1 N LYS A 303 O TYR A 292 SSBOND 1 CYS A 7 CYS A 34 SSBOND 2 CYS A 133 CYS A 163 SSBOND 3 CYS A 166 CYS A 175 SSBOND 4 CYS A 170 CYS A 183 SSBOND 5 CYS A 191 CYS A 199 SSBOND 6 CYS A 195 CYS A 207 SSBOND 7 CYS A 208 CYS A 216 SSBOND 8 CYS A 212 CYS A 224 SSBOND 9 CYS A 227 CYS A 236 SSBOND 10 CYS A 240 CYS A 267 SSBOND 11 CYS A 271 CYS A 283 SSBOND 12 CYS A 287 CYS A 302 SSBOND 13 CYS A 305 CYS A 309 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000