PDB Short entry for 1DVB HEADER ELECTRON TRANSPORT 20-JAN-00 1DVB TITLE RUBRERYTHRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBRERYTHRIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS SUBSP. VULGARIS STR. SOURCE 3 HILDENBOROUGH; SOURCE 4 ORGANISM_TAXID: 882; SOURCE 5 STRAIN: HILDENBOROUGH KEYWDS IRON, FERROXIDASE, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR L.C.SIEKER,M.HOLMES,I.LE TRONG,S.TURLEY,M.Y.LIU,J.LEGALL,R.E.STENKAMP REVDAT 5 09-AUG-23 1DVB 1 REMARK LINK REVDAT 4 13-JUL-11 1DVB 1 VERSN REVDAT 3 24-FEB-09 1DVB 1 VERSN REVDAT 2 01-APR-03 1DVB 1 JRNL REVDAT 1 17-NOV-00 1DVB 0 JRNL AUTH L.C.SIEKER,M.HOLMES,I.LE TRONG,S.TURLEY,M.Y.LIU,J.LEGALL, JRNL AUTH 2 R.E.STENKAMP JRNL TITL THE 1.9 A CRYSTAL STRUCTURE OF THE "AS ISOLATED" JRNL TITL 2 RUBRERYTHRIN FROM DESULFOVIBRIO VULGARIS: SOME SURPRISING JRNL TITL 3 RESULTS. JRNL REF J.BIOL.INORG.CHEM. V. 5 505 2000 JRNL REFN ISSN 0949-8257 JRNL PMID 10968622 JRNL DOI 10.1007/S007750050011 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.197 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.199 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 77 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 15420 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.177 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.176 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 60 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 1155 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1522 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1652.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 1 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 696 REMARK 3 NUMBER OF RESTRAINTS : 652 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 ANGLE DISTANCES (A) : 0.040 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.020 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.020 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.030 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.010 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.050 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-00. REMARK 100 THE DEPOSITION ID IS D_1000010405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : XUONG-HAMLIN MULTIWIRE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15420 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: COORDINATES FROM PDB REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: PDB ID 1RYT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, TRIS ACID MALEATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.31500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.77500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.13000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.31500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.77500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.13000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.31500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.77500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.13000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.31500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.77500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.13000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -156.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 313 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP A 37 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 51 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 GLU A 53 OE1 - CD - OE2 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 59 CD - NE - CZ ANGL. DEV. = 14.3 DEGREES REMARK 500 GLU A 94 OE1 - CD - OE2 ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG A 107 CD - NE - CZ ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 110 CD - NE - CZ ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 110 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 119 CD - NE - CZ ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG A 119 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 134 CD - NE - CZ ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG A 134 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 140 CD - NE - CZ ANGL. DEV. = 21.8 DEGREES REMARK 500 ARG A 140 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 140 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 159 CD - NE - CZ ANGL. DEV. = -15.4 DEGREES REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 -126.36 -85.33 REMARK 500 ALA A 77 78.86 -101.80 REMARK 500 ALA A 81 -163.47 -116.95 REMARK 500 ASN A 190 54.31 -148.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 194 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 20 OE2 REMARK 620 2 GLU A 53 OE1 107.8 REMARK 620 3 HIS A 56 ND1 96.5 119.0 REMARK 620 4 GLU A 128 OE2 88.4 116.3 119.6 REMARK 620 5 GLU A 128 OE1 139.5 99.0 96.3 52.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 193 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 53 OE2 REMARK 620 2 GLU A 94 OE1 152.4 REMARK 620 3 GLU A 94 OE2 98.5 59.3 REMARK 620 4 GLU A 128 OE1 101.5 98.0 156.7 REMARK 620 5 HIS A 131 ND1 92.1 109.1 106.6 84.7 REMARK 620 6 HOH A 196 O 75.0 84.3 79.6 94.0 166.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 192 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 158 SG REMARK 620 2 CYS A 161 SG 111.0 REMARK 620 3 CYS A 174 SG 110.1 106.3 REMARK 620 4 CYS A 177 SG 104.3 116.7 108.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 194 DBREF 1DVB A 1 191 UNP P24931 RUBY_DESVH 1 191 SEQRES 1 A 191 MET LYS SER LEU LYS GLY SER ARG THR GLU LYS ASN ILE SEQRES 2 A 191 LEU THR ALA PHE ALA GLY GLU SER GLN ALA ARG ASN ARG SEQRES 3 A 191 TYR ASN TYR PHE GLY GLY GLN ALA LYS LYS ASP GLY PHE SEQRES 4 A 191 VAL GLN ILE SER ASP ILE PHE ALA GLU THR ALA ASP GLN SEQRES 5 A 191 GLU ARG GLU HIS ALA LYS ARG LEU PHE LYS PHE LEU GLU SEQRES 6 A 191 GLY GLY ASP LEU GLU ILE VAL ALA ALA PHE PRO ALA GLY SEQRES 7 A 191 ILE ILE ALA ASP THR HIS ALA ASN LEU ILE ALA SER ALA SEQRES 8 A 191 ALA GLY GLU HIS HIS GLU TYR THR GLU MET TYR PRO SER SEQRES 9 A 191 PHE ALA ARG ILE ALA ARG GLU GLU GLY TYR GLU GLU ILE SEQRES 10 A 191 ALA ARG VAL PHE ALA SER ILE ALA VAL ALA GLU GLU PHE SEQRES 11 A 191 HIS GLU LYS ARG PHE LEU ASP PHE ALA ARG ASN ILE LYS SEQRES 12 A 191 GLU GLY ARG VAL PHE LEU ARG GLU GLN ALA THR LYS TRP SEQRES 13 A 191 ARG CYS ARG ASN CYS GLY TYR VAL HIS GLU GLY THR GLY SEQRES 14 A 191 ALA PRO GLU LEU CYS PRO ALA CYS ALA HIS PRO LYS ALA SEQRES 15 A 191 HIS PHE GLU LEU LEU GLY ILE ASN TRP HET FE A 192 1 HET FE A 193 1 HET ZN A 194 1 HETNAM FE FE (III) ION HETNAM ZN ZINC ION FORMUL 2 FE 2(FE 3+) FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *165(H2 O) HELIX 1 1 SER A 7 GLY A 38 1 32 HELIX 2 2 PHE A 39 LYS A 62 1 24 HELIX 3 3 ASP A 82 GLU A 100 1 19 HELIX 4 4 GLU A 100 GLU A 112 1 13 HELIX 5 5 TYR A 114 GLU A 144 1 31 SHEET 1 A 3 VAL A 164 GLY A 169 0 SHEET 2 A 3 LEU A 149 CYS A 158 -1 N ARG A 150 O THR A 168 SHEET 3 A 3 PHE A 184 LEU A 186 -1 O GLU A 185 N ARG A 157 LINK OE2 GLU A 20 ZN ZN A 194 1555 1555 2.10 LINK OE2 GLU A 53 FE FE A 193 1555 1555 2.06 LINK OE1 GLU A 53 ZN ZN A 194 1555 1555 2.11 LINK ND1 HIS A 56 ZN ZN A 194 1555 1555 2.20 LINK OE1 GLU A 94 FE FE A 193 1555 1555 2.06 LINK OE2 GLU A 94 FE FE A 193 1555 1555 2.04 LINK OE1 GLU A 128 FE FE A 193 1555 1555 2.02 LINK OE2 GLU A 128 ZN ZN A 194 1555 1555 2.09 LINK OE1 GLU A 128 ZN ZN A 194 1555 1555 2.76 LINK ND1 HIS A 131 FE FE A 193 1555 1555 2.17 LINK SG CYS A 158 FE FE A 192 1555 1555 2.29 LINK SG CYS A 161 FE FE A 192 1555 1555 2.23 LINK SG CYS A 174 FE FE A 192 1555 1555 2.30 LINK SG CYS A 177 FE FE A 192 1555 1555 2.34 LINK FE FE A 193 O HOH A 196 1555 1555 2.20 CISPEP 1 GLY A 78 ILE A 79 0 0.28 SITE 1 AC1 4 CYS A 158 CYS A 161 CYS A 174 CYS A 177 SITE 1 AC2 6 GLU A 53 GLU A 94 GLU A 128 HIS A 131 SITE 2 AC2 6 ZN A 194 HOH A 196 SITE 1 AC3 5 GLU A 20 GLU A 53 HIS A 56 GLU A 128 SITE 2 AC3 5 FE A 193 CRYST1 50.630 81.550 100.260 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019751 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009974 0.00000