PDB Short entry for 1DVD HEADER THIOL PROTEASE INHIBITOR 26-FEB-96 1DVD TITLE SOLUTION NMR STRUCTURE OF HUMAN STEFIN A AT PH 5.5 AND 308K, NMR, 17 TITLE 2 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: STEFIN A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSTATIN A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POTENTIAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PKP1500 KEYWDS THIOL PROTEASE INHIBITOR EXPDTA SOLUTION NMR NUMMDL 17 AUTHOR J.R.MARTIN,C.J.CRAVEN,R.JERALA,L.KROON-ZITKO,E.ZEROVNIK,V.TURK, AUTHOR 2 J.P.WALTHO REVDAT 3 16-FEB-22 1DVD 1 REMARK REVDAT 2 24-FEB-09 1DVD 1 VERSN REVDAT 1 01-AUG-96 1DVD 0 JRNL AUTH J.R.MARTIN,C.J.CRAVEN,R.JERALA,L.KROON-ZITKO,E.ZEROVNIK, JRNL AUTH 2 V.TURK,J.P.WALTHO JRNL TITL THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF HUMAN STEFIN A. JRNL REF J.MOL.BIOL. V. 246 331 1995 JRNL REFN ISSN 0022-2836 JRNL PMID 7869384 JRNL DOI 10.1006/JMBI.1994.0088 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.R.MARTIN,R.JERALA,L.KROON-ZITKO,E.ZEROVNIK,V.TURK, REMARK 1 AUTH 2 J.P.WALTHO REMARK 1 TITL STRUCTURAL CHARACTERISATION OF HUMAN STEFIN A IN SOLUTION REMARK 1 TITL 2 AND IMPLICATIONS FOR BINDING TO CYSTEINE PROTEINASES REMARK 1 REF EUR.J.BIOCHEM. V. 225 1181 1994 REMARK 1 REFN ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DVD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172946. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 17 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 7 77.78 -154.21 REMARK 500 1 LEU A 11 108.06 -37.91 REMARK 500 1 GLU A 13 -177.70 -51.75 REMARK 500 1 ALA A 17 167.77 -41.67 REMARK 500 1 THR A 36 -56.80 -131.61 REMARK 500 1 ASN A 37 20.54 134.15 REMARK 500 1 LYS A 44 127.65 -37.47 REMARK 500 1 LEU A 45 79.99 -102.97 REMARK 500 1 GLU A 46 85.07 -61.80 REMARK 500 1 VAL A 55 -102.96 -170.97 REMARK 500 1 THR A 58 109.59 -165.67 REMARK 500 1 ASN A 59 -176.44 -69.57 REMARK 500 1 ALA A 66 46.07 -86.08 REMARK 500 1 ASP A 68 -163.58 -56.01 REMARK 500 1 SER A 102 46.19 -102.27 REMARK 500 1 LEU A 102A 166.31 51.95 REMARK 500 1 GLN A 105 -149.21 50.99 REMARK 500 1 ASN A 105A -153.34 39.64 REMARK 500 1 LEU A 108 170.32 49.82 REMARK 500 1 TYR A 113 135.57 167.76 REMARK 500 1 ASP A 120 93.30 -69.45 REMARK 500 1 THR A 123 -149.73 49.48 REMARK 500 2 LEU A 11 108.00 -35.10 REMARK 500 2 GLU A 13 -174.45 -59.12 REMARK 500 2 THR A 18 -168.44 -122.30 REMARK 500 2 TYR A 40 -167.63 40.31 REMARK 500 2 GLU A 46 83.74 -69.83 REMARK 500 2 VAL A 55 -101.25 -170.49 REMARK 500 2 THR A 58 108.22 -165.17 REMARK 500 2 ALA A 66 44.90 -86.13 REMARK 500 2 ASP A 68 -140.61 -60.68 REMARK 500 2 MET A 95 114.02 -164.76 REMARK 500 2 LEU A 102A 167.05 52.66 REMARK 500 2 LEU A 108 -174.50 -63.53 REMARK 500 2 TYR A 113 138.00 165.84 REMARK 500 2 ASN A 117 -172.60 -69.51 REMARK 500 2 THR A 123 18.96 39.20 REMARK 500 3 LEU A 11 128.45 -35.88 REMARK 500 3 GLU A 13 176.94 -48.14 REMARK 500 3 ALA A 17 153.52 -39.37 REMARK 500 3 ASN A 37 15.34 131.26 REMARK 500 3 GLU A 46 82.83 -59.53 REMARK 500 3 VAL A 55 -102.46 -170.20 REMARK 500 3 THR A 58 112.31 -168.75 REMARK 500 3 ASN A 59 -166.63 -71.36 REMARK 500 3 ALA A 66 43.96 -85.55 REMARK 500 3 ASP A 68 -112.19 -53.67 REMARK 500 3 SER A 102 -149.72 -102.06 REMARK 500 3 LEU A 102A -59.62 -160.94 REMARK 500 3 PRO A 103 -167.81 -76.80 REMARK 500 REMARK 500 THIS ENTRY HAS 302 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 65 0.23 SIDE CHAIN REMARK 500 2 ARG A 65 0.32 SIDE CHAIN REMARK 500 3 ARG A 65 0.32 SIDE CHAIN REMARK 500 4 ARG A 65 0.22 SIDE CHAIN REMARK 500 5 ARG A 65 0.21 SIDE CHAIN REMARK 500 6 ARG A 65 0.16 SIDE CHAIN REMARK 500 7 ARG A 65 0.26 SIDE CHAIN REMARK 500 8 ARG A 65 0.18 SIDE CHAIN REMARK 500 9 ARG A 65 0.32 SIDE CHAIN REMARK 500 10 ARG A 65 0.32 SIDE CHAIN REMARK 500 11 ARG A 65 0.25 SIDE CHAIN REMARK 500 12 ARG A 65 0.31 SIDE CHAIN REMARK 500 13 ARG A 65 0.12 SIDE CHAIN REMARK 500 14 ARG A 65 0.15 SIDE CHAIN REMARK 500 16 ARG A 65 0.31 SIDE CHAIN REMARK 500 17 ARG A 65 0.21 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DVC RELATED DB: PDB DBREF 1DVD A 6 125 UNP P01040 CYTA_HUMAN 1 98 SEQRES 1 A 98 MET ILE PRO GLY GLY LEU SER GLU ALA LYS PRO ALA THR SEQRES 2 A 98 PRO GLU ILE GLN GLU ILE VAL ASP LYS VAL LYS PRO GLN SEQRES 3 A 98 LEU GLU GLU LYS THR ASN GLU THR TYR GLY LYS LEU GLU SEQRES 4 A 98 ALA VAL GLN TYR LYS THR GLN VAL VAL ALA GLY THR ASN SEQRES 5 A 98 TYR TYR ILE LYS VAL ARG ALA GLY ASP ASN LYS TYR MET SEQRES 6 A 98 HIS LEU LYS VAL PHE LYS SER LEU PRO GLY GLN ASN GLU SEQRES 7 A 98 ASP LEU VAL LEU THR GLY TYR GLN VAL ASP LYS ASN LYS SEQRES 8 A 98 ASP ASP GLU LEU THR GLY PHE HELIX 1 1 GLU A 20 THR A 36 1 17 SHEET 1 A 5 LEU A 11 ALA A 17 0 SHEET 2 A 5 LYS A 44 VAL A 54 -1 O TYR A 50 N LYS A 15 SHEET 3 A 5 THR A 58 ALA A 66 -1 N ARG A 65 O GLU A 46 SHEET 4 A 5 LYS A 93 LYS A 101 -1 N LYS A 101 O THR A 58 SHEET 5 A 5 LEU A 108 LYS A 116 -1 N GLY A 112 O LYS A 98 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000