PDB Short entry for 1DXX HEADER STRUCTURAL PROTEIN 20-JAN-00 1DXX TITLE N-TERMINAL ACTIN-BINDING DOMAIN OF HUMAN DYSTROPHIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYSTROPHIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: ACTIN-BINDING; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: MUSCLE; SOURCE 6 CELLULAR_LOCATION: CELL MEMBRANE; SOURCE 7 GENE: DMD; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PGEX-4T2 KEYWDS STRUCTURAL PROTEIN, DYSTROPHIN, MUSCULAR DYSTROPHY, CALPONIN HOMOLOGY KEYWDS 2 DOMAIN, ACTIN-BINDING, UTROPHIN EXPDTA X-RAY DIFFRACTION AUTHOR F.L.NORWOOD,A.J.SUTHERLAND-SMITH,N.H.KEEP,J.KENDRICK-JONES REVDAT 3 06-DEC-23 1DXX 1 REMARK REVDAT 2 24-FEB-09 1DXX 1 VERSN REVDAT 1 16-MAY-00 1DXX 0 JRNL AUTH F.L.NORWOOD,A.J.SUTHERLAND-SMITH,N.H.KEEP,J.KENDRICK-JONES JRNL TITL THE STRUCTURE OF THE N-TERMINAL ACTIN-BINDING DOMAIN OF JRNL TITL 2 HUMAN DYSTROPHIN AND HOW MUTATIONS IN THIS DOMAIN MAY CAUSE JRNL TITL 3 DUCHENNE OR BECKER MUSCULAR DYSTROPHY JRNL REF STRUCTURE V. 8 481 2000 JRNL REFN ISSN 0969-2126 JRNL PMID 10801490 JRNL DOI 10.1016/S0969-2126(00)00132-5 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 34446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1767 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.28000 REMARK 3 B22 (A**2) : -3.92000 REMARK 3 B33 (A**2) : -4.32000 REMARK 3 B12 (A**2) : -0.55000 REMARK 3 B13 (A**2) : -1.07000 REMARK 3 B23 (A**2) : -0.50000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.860 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.340 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.770 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; 0.016 REMARK 3 ANGLE DISTANCE (A) : 0.043 ; 0.035 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.053 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.017 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.160 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.210 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.270 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.190 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.700 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 18.000; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 34.400; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.800 ; 2.600 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.300 ; 4.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.100 ; 3.800 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.100 ; 4.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR BULK SOLVENT MODEL USED TERMINAL REMARK 3 RESIDUES FROM PGEX-4T2 CLONING SITE WERE NOT OBSERVED IN MAPS. REMARK 3 TIGHT NCS RESTRAINTS WERE IMPOSED DURING ALL STAGES OF REMARK 3 REFINEMENT. REMARK 4 REMARK 4 1DXX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-00. REMARK 100 THE DEPOSITION ID IS D_1290004448. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36284 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 1.700 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1QAG REMARK 200 REMARK 200 REMARK: DOMAIN SWAPPED SEARCH MODEL USED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.55M AMMONIUM FORMATE, 0.1M HEPES REMARK 280 7.4, PH 7.40 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 TRP A 3 REMARK 465 TRP A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 VAL A 7 REMARK 465 GLU A 8 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 TRP B 3 REMARK 465 TRP B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 VAL B 7 REMARK 465 GLU B 8 REMARK 465 MET C 1 REMARK 465 LEU C 2 REMARK 465 TRP C 3 REMARK 465 TRP C 4 REMARK 465 GLU C 5 REMARK 465 GLU C 6 REMARK 465 VAL C 7 REMARK 465 GLU C 8 REMARK 465 MET D 1 REMARK 465 LEU D 2 REMARK 465 TRP D 3 REMARK 465 TRP D 4 REMARK 465 GLU D 5 REMARK 465 GLU D 6 REMARK 465 VAL D 7 REMARK 465 GLU D 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 TYR A 11 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 GLN A 132 CG CD OE1 NE2 REMARK 470 LYS A 138 CD CE NZ REMARK 470 ARG A 149 CD NE CZ NH1 NH2 REMARK 470 GLN A 190 CG CD OE1 NE2 REMARK 470 GLN A 194 CG CD OE1 NE2 REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 ASP B 9 CG OD1 OD2 REMARK 470 TYR B 11 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 32 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 GLN B 132 CG CD OE1 NE2 REMARK 470 LYS B 138 CD CE NZ REMARK 470 ARG B 149 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 190 CG CD OE1 NE2 REMARK 470 GLN B 194 CG CD OE1 NE2 REMARK 470 GLN B 242 CG CD OE1 NE2 REMARK 470 ASP C 9 CG OD1 OD2 REMARK 470 TYR C 11 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 61 CG CD CE NZ REMARK 470 LYS C 105 CD CE NZ REMARK 470 GLN C 132 CG CD OE1 NE2 REMARK 470 LYS C 138 CD CE NZ REMARK 470 ARG C 149 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 194 CG CD OE1 NE2 REMARK 470 GLN C 242 CG CD OE1 NE2 REMARK 470 ASP D 9 CG OD1 OD2 REMARK 470 TYR D 11 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE D 32 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 61 CG CD CE NZ REMARK 470 LYS D 105 CG CD CE NZ REMARK 470 GLN D 132 CG CD OE1 NE2 REMARK 470 LYS D 138 CD CE NZ REMARK 470 ARG D 149 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 194 CG CD OE1 NE2 REMARK 470 GLN D 242 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 12 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 GLU A 12 CA - CB - CG ANGL. DEV. = 23.5 DEGREES REMARK 500 PHE A 32 CB - CG - CD2 ANGL. DEV. = -10.1 DEGREES REMARK 500 PHE A 32 CB - CG - CD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 49 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 GLY A 67 CA - C - O ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 LYS A 79 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG A 82 CD - NE - CZ ANGL. DEV. = 12.8 DEGREES REMARK 500 VAL A 89 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 ASP A 101 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 GLU A 137 OE1 - CD - OE2 ANGL. DEV. = 8.3 DEGREES REMARK 500 SER A 142 N - CA - CB ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 145 CD - NE - CZ ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 145 NE - CZ - NH1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 145 NE - CZ - NH2 ANGL. DEV. = -9.9 DEGREES REMARK 500 ASP A 165 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 165 CA - C - N ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP A 182 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 195 CD - NE - CZ ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG A 195 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 219 CB - CG - OD2 ANGL. DEV. = -14.9 DEGREES REMARK 500 ASP A 224 CB - CG - OD1 ANGL. DEV. = -6.4 DEGREES REMARK 500 GLU B 12 N - CA - CB ANGL. DEV. = 12.7 DEGREES REMARK 500 GLU B 12 CA - CB - CG ANGL. DEV. = 23.2 DEGREES REMARK 500 ARG B 49 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 GLY B 67 CA - C - O ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG B 70 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 LYS B 79 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG B 82 CD - NE - CZ ANGL. DEV. = 12.6 DEGREES REMARK 500 VAL B 92 CA - CB - CG2 ANGL. DEV. = -9.1 DEGREES REMARK 500 ASP B 101 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 GLU B 137 OE1 - CD - OE2 ANGL. DEV. = 7.6 DEGREES REMARK 500 SER B 142 N - CA - CB ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG B 145 CD - NE - CZ ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG B 145 NE - CZ - NH1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG B 145 NE - CZ - NH2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ASP B 165 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 182 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 195 CD - NE - CZ ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG B 195 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP B 219 CB - CG - OD2 ANGL. DEV. = -15.6 DEGREES REMARK 500 ASP B 224 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 GLU C 12 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 GLU C 12 CA - CB - CG ANGL. DEV. = 23.6 DEGREES REMARK 500 PHE C 32 CB - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 PHE C 32 CB - CG - CD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG C 49 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 GLY C 67 CA - C - O ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG C 70 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 87 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 10 -60.81 -98.13 REMARK 500 LYS A 66 -91.84 -49.76 REMARK 500 GLN A 119 -69.93 -140.40 REMARK 500 THR A 160 -110.09 -119.44 REMARK 500 ASP A 165 0.11 -59.17 REMARK 500 PHE A 181 -176.57 -174.32 REMARK 500 SER B 10 -60.51 -98.34 REMARK 500 TYR B 11 61.42 60.20 REMARK 500 LYS B 66 -91.30 -49.63 REMARK 500 GLN B 119 -71.17 -140.29 REMARK 500 THR B 160 -110.15 -120.10 REMARK 500 ASP B 165 0.96 -60.60 REMARK 500 PHE B 181 -175.89 -173.50 REMARK 500 SER C 10 -60.56 -98.18 REMARK 500 TYR C 11 60.51 60.36 REMARK 500 LYS C 66 -91.42 -49.77 REMARK 500 GLN C 119 -69.98 -139.81 REMARK 500 THR C 160 -110.44 -119.96 REMARK 500 ASP C 165 0.52 -58.27 REMARK 500 PHE C 181 -175.80 -173.45 REMARK 500 GLN C 241 54.82 -119.98 REMARK 500 SER D 10 -60.59 -97.99 REMARK 500 TYR D 11 60.54 60.99 REMARK 500 LYS D 66 -91.76 -49.67 REMARK 500 GLN D 119 -70.17 -139.97 REMARK 500 THR D 160 -111.71 -120.72 REMARK 500 ASP D 165 1.02 -59.39 REMARK 500 PHE D 181 -176.76 -173.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEET IN EACH DIMERIC MOLECULE INVOLVES A STRAND REMARK 700 CONTRIBUTED FROM EACH COMPONENT CHAIN. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QAG RELATED DB: PDB REMARK 900 ACTIN BINDING REGION OF THE DYSTROPHIN HOMOLOGUE UTROPHIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL FRAGMENT 1-246 DBREF 1DXX A 1 246 UNP P11532 DMD_HUMAN 1 246 DBREF 1DXX B 1 246 UNP P11532 DMD_HUMAN 1 246 DBREF 1DXX C 1 246 UNP P11532 DMD_HUMAN 1 246 DBREF 1DXX D 1 246 UNP P11532 DMD_HUMAN 1 246 SEQADV 1DXX SER A 10 UNP P11532 CYS 10 ENGINEERED MUTATION SEQADV 1DXX SER B 10 UNP P11532 CYS 10 ENGINEERED MUTATION SEQADV 1DXX SER C 10 UNP P11532 CYS 10 ENGINEERED MUTATION SEQADV 1DXX SER D 10 UNP P11532 CYS 10 ENGINEERED MUTATION SEQADV 1DXX SER A 188 UNP P11532 CYS 188 ENGINEERED MUTATION SEQADV 1DXX SER B 188 UNP P11532 CYS 188 ENGINEERED MUTATION SEQADV 1DXX SER C 188 UNP P11532 CYS 188 ENGINEERED MUTATION SEQADV 1DXX SER D 188 UNP P11532 CYS 188 ENGINEERED MUTATION SEQRES 1 A 246 MET LEU TRP TRP GLU GLU VAL GLU ASP SER TYR GLU ARG SEQRES 2 A 246 GLU ASP VAL GLN LYS LYS THR PHE THR LYS TRP VAL ASN SEQRES 3 A 246 ALA GLN PHE SER LYS PHE GLY LYS GLN HIS ILE GLU ASN SEQRES 4 A 246 LEU PHE SER ASP LEU GLN ASP GLY ARG ARG LEU LEU ASP SEQRES 5 A 246 LEU LEU GLU GLY LEU THR GLY GLN LYS LEU PRO LYS GLU SEQRES 6 A 246 LYS GLY SER THR ARG VAL HIS ALA LEU ASN ASN VAL ASN SEQRES 7 A 246 LYS ALA LEU ARG VAL LEU GLN ASN ASN ASN VAL ASP LEU SEQRES 8 A 246 VAL ASN ILE GLY SER THR ASP ILE VAL ASP GLY ASN HIS SEQRES 9 A 246 LYS LEU THR LEU GLY LEU ILE TRP ASN ILE ILE LEU HIS SEQRES 10 A 246 TRP GLN VAL LYS ASN VAL MET LYS ASN ILE MET ALA GLY SEQRES 11 A 246 LEU GLN GLN THR ASN SER GLU LYS ILE LEU LEU SER TRP SEQRES 12 A 246 VAL ARG GLN SER THR ARG ASN TYR PRO GLN VAL ASN VAL SEQRES 13 A 246 ILE ASN PHE THR THR SER TRP SER ASP GLY LEU ALA LEU SEQRES 14 A 246 ASN ALA LEU ILE HIS SER HIS ARG PRO ASP LEU PHE ASP SEQRES 15 A 246 TRP ASN SER VAL VAL SER GLN GLN SER ALA THR GLN ARG SEQRES 16 A 246 LEU GLU HIS ALA PHE ASN ILE ALA ARG TYR GLN LEU GLY SEQRES 17 A 246 ILE GLU LYS LEU LEU ASP PRO GLU ASP VAL ASP THR THR SEQRES 18 A 246 TYR PRO ASP LYS LYS SER ILE LEU MET TYR ILE THR SER SEQRES 19 A 246 LEU PHE GLN VAL LEU PRO GLN GLN VAL SER ILE GLU SEQRES 1 B 246 MET LEU TRP TRP GLU GLU VAL GLU ASP SER TYR GLU ARG SEQRES 2 B 246 GLU ASP VAL GLN LYS LYS THR PHE THR LYS TRP VAL ASN SEQRES 3 B 246 ALA GLN PHE SER LYS PHE GLY LYS GLN HIS ILE GLU ASN SEQRES 4 B 246 LEU PHE SER ASP LEU GLN ASP GLY ARG ARG LEU LEU ASP SEQRES 5 B 246 LEU LEU GLU GLY LEU THR GLY GLN LYS LEU PRO LYS GLU SEQRES 6 B 246 LYS GLY SER THR ARG VAL HIS ALA LEU ASN ASN VAL ASN SEQRES 7 B 246 LYS ALA LEU ARG VAL LEU GLN ASN ASN ASN VAL ASP LEU SEQRES 8 B 246 VAL ASN ILE GLY SER THR ASP ILE VAL ASP GLY ASN HIS SEQRES 9 B 246 LYS LEU THR LEU GLY LEU ILE TRP ASN ILE ILE LEU HIS SEQRES 10 B 246 TRP GLN VAL LYS ASN VAL MET LYS ASN ILE MET ALA GLY SEQRES 11 B 246 LEU GLN GLN THR ASN SER GLU LYS ILE LEU LEU SER TRP SEQRES 12 B 246 VAL ARG GLN SER THR ARG ASN TYR PRO GLN VAL ASN VAL SEQRES 13 B 246 ILE ASN PHE THR THR SER TRP SER ASP GLY LEU ALA LEU SEQRES 14 B 246 ASN ALA LEU ILE HIS SER HIS ARG PRO ASP LEU PHE ASP SEQRES 15 B 246 TRP ASN SER VAL VAL SER GLN GLN SER ALA THR GLN ARG SEQRES 16 B 246 LEU GLU HIS ALA PHE ASN ILE ALA ARG TYR GLN LEU GLY SEQRES 17 B 246 ILE GLU LYS LEU LEU ASP PRO GLU ASP VAL ASP THR THR SEQRES 18 B 246 TYR PRO ASP LYS LYS SER ILE LEU MET TYR ILE THR SER SEQRES 19 B 246 LEU PHE GLN VAL LEU PRO GLN GLN VAL SER ILE GLU SEQRES 1 C 246 MET LEU TRP TRP GLU GLU VAL GLU ASP SER TYR GLU ARG SEQRES 2 C 246 GLU ASP VAL GLN LYS LYS THR PHE THR LYS TRP VAL ASN SEQRES 3 C 246 ALA GLN PHE SER LYS PHE GLY LYS GLN HIS ILE GLU ASN SEQRES 4 C 246 LEU PHE SER ASP LEU GLN ASP GLY ARG ARG LEU LEU ASP SEQRES 5 C 246 LEU LEU GLU GLY LEU THR GLY GLN LYS LEU PRO LYS GLU SEQRES 6 C 246 LYS GLY SER THR ARG VAL HIS ALA LEU ASN ASN VAL ASN SEQRES 7 C 246 LYS ALA LEU ARG VAL LEU GLN ASN ASN ASN VAL ASP LEU SEQRES 8 C 246 VAL ASN ILE GLY SER THR ASP ILE VAL ASP GLY ASN HIS SEQRES 9 C 246 LYS LEU THR LEU GLY LEU ILE TRP ASN ILE ILE LEU HIS SEQRES 10 C 246 TRP GLN VAL LYS ASN VAL MET LYS ASN ILE MET ALA GLY SEQRES 11 C 246 LEU GLN GLN THR ASN SER GLU LYS ILE LEU LEU SER TRP SEQRES 12 C 246 VAL ARG GLN SER THR ARG ASN TYR PRO GLN VAL ASN VAL SEQRES 13 C 246 ILE ASN PHE THR THR SER TRP SER ASP GLY LEU ALA LEU SEQRES 14 C 246 ASN ALA LEU ILE HIS SER HIS ARG PRO ASP LEU PHE ASP SEQRES 15 C 246 TRP ASN SER VAL VAL SER GLN GLN SER ALA THR GLN ARG SEQRES 16 C 246 LEU GLU HIS ALA PHE ASN ILE ALA ARG TYR GLN LEU GLY SEQRES 17 C 246 ILE GLU LYS LEU LEU ASP PRO GLU ASP VAL ASP THR THR SEQRES 18 C 246 TYR PRO ASP LYS LYS SER ILE LEU MET TYR ILE THR SER SEQRES 19 C 246 LEU PHE GLN VAL LEU PRO GLN GLN VAL SER ILE GLU SEQRES 1 D 246 MET LEU TRP TRP GLU GLU VAL GLU ASP SER TYR GLU ARG SEQRES 2 D 246 GLU ASP VAL GLN LYS LYS THR PHE THR LYS TRP VAL ASN SEQRES 3 D 246 ALA GLN PHE SER LYS PHE GLY LYS GLN HIS ILE GLU ASN SEQRES 4 D 246 LEU PHE SER ASP LEU GLN ASP GLY ARG ARG LEU LEU ASP SEQRES 5 D 246 LEU LEU GLU GLY LEU THR GLY GLN LYS LEU PRO LYS GLU SEQRES 6 D 246 LYS GLY SER THR ARG VAL HIS ALA LEU ASN ASN VAL ASN SEQRES 7 D 246 LYS ALA LEU ARG VAL LEU GLN ASN ASN ASN VAL ASP LEU SEQRES 8 D 246 VAL ASN ILE GLY SER THR ASP ILE VAL ASP GLY ASN HIS SEQRES 9 D 246 LYS LEU THR LEU GLY LEU ILE TRP ASN ILE ILE LEU HIS SEQRES 10 D 246 TRP GLN VAL LYS ASN VAL MET LYS ASN ILE MET ALA GLY SEQRES 11 D 246 LEU GLN GLN THR ASN SER GLU LYS ILE LEU LEU SER TRP SEQRES 12 D 246 VAL ARG GLN SER THR ARG ASN TYR PRO GLN VAL ASN VAL SEQRES 13 D 246 ILE ASN PHE THR THR SER TRP SER ASP GLY LEU ALA LEU SEQRES 14 D 246 ASN ALA LEU ILE HIS SER HIS ARG PRO ASP LEU PHE ASP SEQRES 15 D 246 TRP ASN SER VAL VAL SER GLN GLN SER ALA THR GLN ARG SEQRES 16 D 246 LEU GLU HIS ALA PHE ASN ILE ALA ARG TYR GLN LEU GLY SEQRES 17 D 246 ILE GLU LYS LEU LEU ASP PRO GLU ASP VAL ASP THR THR SEQRES 18 D 246 TYR PRO ASP LYS LYS SER ILE LEU MET TYR ILE THR SER SEQRES 19 D 246 LEU PHE GLN VAL LEU PRO GLN GLN VAL SER ILE GLU FORMUL 5 HOH *74(H2 O) HELIX 1 1 ARG A 13 PHE A 32 1 20 HELIX 2 2 GLY A 47 GLY A 59 1 13 HELIX 3 3 THR A 69 ASN A 87 1 19 HELIX 4 4 GLY A 95 ASP A 101 1 7 HELIX 5 5 ASN A 103 GLN A 119 1 17 HELIX 6 6 LYS A 121 GLN A 132 1 12 HELIX 7 7 ASN A 135 ARG A 149 1 15 HELIX 8 8 THR A 160 SER A 164 5 5 HELIX 9 9 GLY A 166 ARG A 177 1 12 HELIX 10 10 PRO A 178 PHE A 181 5 4 HELIX 11 11 ASP A 182 SER A 188 1 7 HELIX 12 12 SER A 191 GLN A 206 1 16 HELIX 13 13 ASP A 214 ASP A 219 1 6 HELIX 14 14 ASP A 224 GLN A 237 1 14 HELIX 15 15 ARG B 13 PHE B 32 1 20 HELIX 16 16 GLY B 47 GLY B 59 1 13 HELIX 17 17 THR B 69 ASN B 87 1 19 HELIX 18 18 GLY B 95 ASP B 101 1 7 HELIX 19 19 ASN B 103 GLN B 119 1 17 HELIX 20 20 LYS B 121 GLN B 132 1 12 HELIX 21 21 ASN B 135 ARG B 149 1 15 HELIX 22 22 THR B 160 SER B 164 5 5 HELIX 23 23 GLY B 166 ARG B 177 1 12 HELIX 24 24 PRO B 178 PHE B 181 5 4 HELIX 25 25 ASP B 182 SER B 188 1 7 HELIX 26 26 SER B 191 GLN B 206 1 16 HELIX 27 27 ASP B 214 ASP B 219 1 6 HELIX 28 28 ASP B 224 GLN B 237 1 14 HELIX 29 29 ARG C 13 PHE C 32 1 20 HELIX 30 30 GLY C 47 GLY C 59 1 13 HELIX 31 31 THR C 69 ASN C 87 1 19 HELIX 32 32 GLY C 95 ASP C 101 1 7 HELIX 33 33 ASN C 103 GLN C 119 1 17 HELIX 34 34 LYS C 121 GLN C 132 1 12 HELIX 35 35 ASN C 135 ARG C 149 1 15 HELIX 36 36 THR C 160 SER C 164 5 5 HELIX 37 37 GLY C 166 ARG C 177 1 12 HELIX 38 38 PRO C 178 PHE C 181 5 4 HELIX 39 39 ASP C 182 SER C 188 1 7 HELIX 40 40 SER C 191 GLN C 206 1 16 HELIX 41 41 ASP C 214 ASP C 219 1 6 HELIX 42 42 ASP C 224 GLN C 237 1 14 HELIX 43 43 ARG D 13 PHE D 32 1 20 HELIX 44 44 GLY D 47 GLY D 59 1 13 HELIX 45 45 THR D 69 ASN D 87 1 19 HELIX 46 46 GLY D 95 ASP D 101 1 7 HELIX 47 47 ASN D 103 GLN D 119 1 17 HELIX 48 48 LYS D 121 GLN D 132 1 12 HELIX 49 49 ASN D 135 ARG D 149 1 15 HELIX 50 50 THR D 160 SER D 164 5 5 HELIX 51 51 GLY D 166 ARG D 177 1 12 HELIX 52 52 PRO D 178 PHE D 181 5 4 HELIX 53 53 ASP D 182 SER D 188 1 7 HELIX 54 54 SER D 191 GLN D 206 1 16 HELIX 55 55 ASP D 214 ASP D 219 1 6 HELIX 56 56 ASP D 224 GLN D 237 1 14 SHEET 1 AB 2 VAL A 243 ILE A 245 0 SHEET 2 AB 2 VAL B 243 ILE B 245 -1 O VAL B 243 N ILE A 245 SHEET 1 CD 2 VAL C 243 ILE C 245 0 SHEET 2 CD 2 VAL D 243 ILE D 245 -1 O VAL D 243 N ILE C 245 CRYST1 59.690 79.330 81.950 61.08 78.22 70.54 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016753 -0.005919 -0.000928 0.00000 SCALE2 0.000000 0.013369 -0.006741 0.00000 SCALE3 0.000000 0.000000 0.013960 0.00000 MTRIX1 1 -0.773290 0.634060 0.000620 25.70045 1 MTRIX2 1 0.634050 0.773290 -0.002220 -9.12847 1 MTRIX3 1 -0.001890 -0.001330 -1.000000 38.25601 1 MTRIX1 2 0.769170 -0.631620 -0.097120 13.40925 1 MTRIX2 2 -0.631380 -0.774590 0.037100 31.93406 1 MTRIX3 2 -0.098660 0.032780 -0.994580 39.52884 1 MTRIX1 3 -0.995180 0.001710 0.098030 35.38485 1 MTRIX2 3 -0.005120 -0.999390 -0.034530 24.20050 1 MTRIX3 3 0.097920 -0.034870 0.994580 -1.41113 1