PDB Short entry for 1DYP HEADER HYDROLASE 04-FEB-00 1DYP TITLE 1,3-ALPHA-1,4-BETA-D-GALACTOSE-4-SULFATE- TITLE 2 3,6-ANHYDRO-D-GALACTOSE 4 GALACTOHYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: KAPPA-CARRAGEENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 EC: 3.2.1.83; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: COMPLEXED WITH CADMIUM CHLORIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOALTEROMONAS CARRAGEENOVORA; SOURCE 3 ORGANISM_TAXID: 227; SOURCE 4 PLASMID: PET20B; SOURCE 5 GENE: CGKA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET20B; SOURCE 10 OTHER_DETAILS: PROCESSED PROTEIN, HIS-TAG, SELEMETHIONYL SOURCE 11 PROTEIN KEYWDS HYDROLASE, KAPPA-CARRAGEENAN DOUBLE HELIX DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR G.MICHEL,L.CHANTALAT,O.DIDEBERG REVDAT 3 24-FEB-09 1DYP 1 VERSN REVDAT 2 23-NOV-01 1DYP 1 JRNL REVDAT 1 16-JAN-01 1DYP 0 JRNL AUTH G.MICHEL,L.CHANTALAT,E.DUEE,T.BARBEYRON, JRNL AUTH 2 B.HENRISSAT,B.KLOAREG,O.DIDEBERG JRNL TITL THE KAPPA-CARRAGEENASE OF P. CARRAGEENOVORA JRNL TITL 2 FEATURES A TUNNEL-SHAPED ACTIVE SITE: A NOVEL JRNL TITL 3 INSIGHT IN THE EVOLUTION OF CLAN-B GLYCOSIDE JRNL TITL 4 HYDROLASES JRNL REF STRUCTURE V. 9 513 2001 JRNL REFN ISSN 0969-2126 JRNL PMID 11435116 JRNL DOI 10.1016/S0969-2126(01)00612-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.MICHEL,T.BARBEYRON,D.FLAMENT,T.VERNET,B.KLOAREG, REMARK 1 AUTH 2 O.DIDEBERG REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY ANALYSIS OF THE KAPPA- REMARK 1 TITL 3 CARRAGEENASE FROM PSEUDOALTEROMONAS REMARK 1 TITL 4 CARRAGEENOVORA. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 55 918 1999 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 10089334 REMARK 1 DOI 10.1107/S0907444998018526 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1371908.26 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 38205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1919 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.6 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5240 REMARK 3 BIN R VALUE (WORKING SET) : 0.206 REMARK 3 BIN FREE R VALUE : 0.234 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 265 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2178 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 405 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.31 REMARK 3 B22 (A**2) : 1.85 REMARK 3 B33 (A**2) : 0.47 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.12 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.5 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.1 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.76 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.30 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.53 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.45 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 0.68 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33629 REMARK 3 BSOL : 37.427 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FOLLOWING RESIDUES HAVE TWO REMARK 3 CONFORMATIONS, MET 28, SER 199, LYS 277, SER 285, GLU 287. REMARK 4 REMARK 4 1DYP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-00. REMARK 100 THE PDBE ID CODE IS EBI-4577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8860, 0.9755, 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38205 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 24.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.11600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS 0.9, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.019 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.20400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.76150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.76150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.20400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.56000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 78 NZ REMARK 470 LYS A 80 NZ REMARK 470 LYS A 191 CD CE NZ REMARK 470 ARG A 196 NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 60 76.90 -156.76 REMARK 500 ASN A 122 -75.25 -143.21 REMARK 500 THR A 170 50.32 38.16 REMARK 500 ASP A 217 -178.55 64.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1298 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 241 OE2 REMARK 620 2 HOH A2344 O 88.5 REMARK 620 3 GLU A 241 OE1 54.5 89.1 REMARK 620 4 CL A1305 CL 152.0 97.0 98.0 REMARK 620 5 HOH A2376 O 83.8 171.2 83.1 88.0 REMARK 620 6 CL A1306 CL 99.3 95.9 153.3 107.3 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1299 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 79 O REMARK 620 2 HOH A2064 O 102.8 REMARK 620 3 HOH A2401 O 87.3 70.2 REMARK 620 4 GLU A 48 O 90.7 79.7 148.5 REMARK 620 5 ASP A 289 O 88.0 153.7 135.0 76.2 REMARK 620 6 ASP A 289 OD1 88.5 130.7 62.5 148.8 72.6 REMARK 620 7 HOH A2052 O 170.9 83.7 88.9 96.8 88.8 82.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1300 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2276 O REMARK 620 2 HOH A2131 O 79.3 REMARK 620 3 HOH A2253 O 87.2 72.9 REMARK 620 4 CL A1308 CL 100.1 108.6 172.7 REMARK 620 5 HIS A 183 NE2 94.2 161.6 89.8 89.4 REMARK 620 6 CL A1307 CL 174.7 97.2 87.9 84.8 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1301 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CL A1310 CL REMARK 620 2 HOH A2398 O 96.9 REMARK 620 3 CL A1309 CL 102.8 118.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2399 O REMARK 620 2 CL A1311 CL 113.5 REMARK 620 3 SER A 285 O 65.3 87.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1303 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2139 O REMARK 620 2 ASP A 289 OD2 166.4 REMARK 620 3 HOH A2400 O 79.4 91.9 REMARK 620 4 HOH A2041 O 69.0 112.9 138.0 REMARK 620 5 HOH A2115 O 59.7 129.2 79.2 106.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1304 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 72 OE1 REMARK 620 2 GLU A 72 OE2 56.7 REMARK 620 3 HOH A2221 O 104.1 160.5 REMARK 620 4 HOH A2403 O 135.9 100.5 96.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1311 DBREF 1DYP A 27 297 UNP P43478 CGKA_ALTCA 27 297 SEQADV 1DYP LYS A 78 UNP P43478 ASN 78 ENGINEERED SEQADV 1DYP MSE A 28 UNP P43478 MET 28 MODIFIED RESIDUE SEQADV 1DYP MSE A 145 UNP P43478 MET 145 MODIFIED RESIDUE SEQADV 1DYP MSE A 195 UNP P43478 MET 195 MODIFIED RESIDUE SEQADV 1DYP MSE A 251 UNP P43478 MET 251 MODIFIED RESIDUE SEQADV 1DYP MSE A 286 UNP P43478 MET 286 MODIFIED RESIDUE SEQRES 1 A 271 SER MSE GLN PRO PRO ILE ALA LYS PRO GLY GLU THR TRP SEQRES 2 A 271 ILE LEU GLN ALA LYS ARG SER ASP GLU PHE ASN VAL LYS SEQRES 3 A 271 ASP ALA THR LYS TRP ASN PHE GLN THR GLU ASN TYR GLY SEQRES 4 A 271 VAL TRP SER TRP LYS ASN GLU ASN ALA THR VAL SER LYS SEQRES 5 A 271 GLY LYS LEU LYS LEU THR THR LYS ARG GLU SER HIS GLN SEQRES 6 A 271 ARG THR PHE TRP ASP GLY CYS ASN GLN GLN GLN VAL ALA SEQRES 7 A 271 ASN TYR PRO LEU TYR TYR THR SER GLY VAL ALA LYS SER SEQRES 8 A 271 ARG ALA THR GLY ASN TYR GLY TYR TYR GLU ALA ARG ILE SEQRES 9 A 271 LYS GLY ALA SER THR PHE PRO GLY VAL SER PRO ALA PHE SEQRES 10 A 271 TRP MSE TYR SER THR ILE ASP ARG SER LEU THR LYS GLU SEQRES 11 A 271 GLY ASP VAL GLN TYR SER GLU ILE ASP VAL VAL GLU LEU SEQRES 12 A 271 THR GLN LYS SER ALA VAL ARG GLU SER ASP HIS ASP LEU SEQRES 13 A 271 HIS ASN ILE VAL VAL LYS ASN GLY LYS PRO THR TRP MSE SEQRES 14 A 271 ARG PRO GLY SER PHE PRO GLN THR ASN HIS ASN GLY TYR SEQRES 15 A 271 HIS LEU PRO PHE ASP PRO ARG ASN ASP PHE HIS THR TYR SEQRES 16 A 271 GLY VAL ASN VAL THR LYS ASP LYS ILE THR TRP TYR VAL SEQRES 17 A 271 ASP GLY GLU ILE VAL GLY GLU LYS ASP ASN LEU TYR TRP SEQRES 18 A 271 HIS ARG GLN MSE ASN LEU THR LEU SER GLN GLY LEU ARG SEQRES 19 A 271 ALA PRO HIS THR GLN TRP LYS CYS ASN GLN PHE TYR PRO SEQRES 20 A 271 SER ALA ASN LYS SER ALA GLU GLY PHE PRO THR SER MSE SEQRES 21 A 271 GLU VAL ASP TYR VAL ARG THR TRP VAL LYS VAL MODRES 1DYP MSE A 28 MET SELENOMETHIONINE MODRES 1DYP MSE A 145 MET SELENOMETHIONINE MODRES 1DYP MSE A 195 MET SELENOMETHIONINE MODRES 1DYP MSE A 251 MET SELENOMETHIONINE MODRES 1DYP MSE A 286 MET SELENOMETHIONINE HET CD A1298 1 HET CD A1299 1 HET CD A1300 1 HET CD A1301 1 HET CD A1302 1 HET CD A1303 1 HET CD A1304 1 HET CL A1305 1 HET CL A1306 1 HET CL A1307 1 HET CL A1308 1 HET CL A1309 1 HET CL A1310 1 HET CL A1311 1 HET MSE A 28 12 HET MSE A 145 8 HET MSE A 195 8 HET MSE A 251 8 HET MSE A 286 8 HETNAM MSE SELENOMETHIONINE HETNAM CD CADMIUM ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 CD 7(CD 2+) FORMUL 9 CL 7(CL 1-) FORMUL 16 HOH *405(H2 O1) HELIX 1 1 ALA A 43 SER A 46 5 4 HELIX 2 2 GLY A 97 GLN A 100 5 4 HELIX 3 3 PHE A 200 HIS A 205 1 6 SHEET 1 A 3 TRP A 39 LEU A 41 0 SHEET 2 A 3 THR A 284 LYS A 296 SHEET 3 A 3 LYS A 80 ASP A 96 SHEET 1 A1 6 TRP A 39 LEU A 41 0 SHEET 2 A1 6 THR A 284 LYS A 296 SHEET 3 A1 6 GLY A 124 LYS A 131 SHEET 4 A1 6 HIS A 219 VAL A 225 -1 O HIS A 219 N ILE A 130 SHEET 5 A1 6 LYS A 229 VAL A 234 -1 O THR A 231 N ASN A 224 SHEET 6 A1 6 GLU A 237 ASP A 243 -1 O GLU A 237 N VAL A 234 SHEET 1 B 7 TRP A 57 ASN A 58 0 SHEET 2 B 7 VAL A 114 GLY A 121 SHEET 3 B 7 MSE A 251 LEU A 259 SHEET 4 B 7 VAL A 139 TYR A 146 SHEET 5 B 7 VAL A 159 GLU A 168 SHEET 6 B 7 LEU A 182 LYS A 188 -1 O HIS A 183 N GLU A 163 SHEET 7 B 7 LYS A 191 MSE A 195 SHEET 1 C 2 GLU A 177 ASP A 179 0 SHEET 2 C 2 GLY A 207 HIS A 209 -1 O TYR A 208 N SER A 178 SHEET 1 D 2 THR A 264 LYS A 267 0 SHEET 2 D 2 GLN A 270 PRO A 273 -1 O GLN A 270 N LYS A 267 SSBOND 1 CYS A 98 CYS A 268 1555 1555 2.03 LINK C SER A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N GLN A 29 1555 1555 1.33 LINK C TRP A 144 N MSE A 145 1555 1555 1.32 LINK C MSE A 145 N TYR A 146 1555 1555 1.32 LINK C TRP A 194 N MSE A 195 1555 1555 1.32 LINK C MSE A 195 N ARG A 196 1555 1555 1.33 LINK C GLN A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N ASN A 252 1555 1555 1.33 LINK C SER A 285 N MSE A 286 1555 1555 1.33 LINK C MSE A 286 N GLU A 287 1555 1555 1.33 LINK CD CD A1298 OE2 GLU A 241 1555 1555 2.35 LINK CD CD A1298 O HOH A2344 1555 1555 2.35 LINK CD CD A1298 OE1 GLU A 241 1555 1555 2.42 LINK CD CD A1298 CL CL A1305 1555 1555 2.53 LINK CD CD A1298 O HOH A2376 1555 3655 2.42 LINK CD CD A1298 CL CL A1306 1555 1555 2.45 LINK CD CD A1299 O GLY A 79 1555 1555 2.27 LINK CD CD A1299 O HOH A2064 1555 1555 2.32 LINK CD CD A1299 O HOH A2401 1555 1555 2.58 LINK CD CD A1299 O GLU A 48 1555 1555 2.35 LINK CD CD A1299 O ASP A 289 1555 1555 2.34 LINK CD CD A1299 OD1 ASP A 289 1555 1555 2.47 LINK CD CD A1299 O HOH A2052 1555 1555 2.37 LINK CD CD A1300 O HOH A2131 1555 1555 2.42 LINK CD CD A1300 O HOH A2253 1555 1555 2.46 LINK CD CD A1300 CL CL A1308 1555 1555 2.38 LINK CD CD A1300 NE2 HIS A 183 1555 1555 2.42 LINK CD CD A1300 CL CL A1307 1555 1555 2.19 LINK CD CD A1300 O HOH A2276 1555 1555 2.34 LINK CD CD A1301 O HOH A2398 1555 1555 2.46 LINK CD CD A1301 CL CL A1309 1555 1555 2.44 LINK CD CD A1301 CL CL A1310 1555 1555 2.65 LINK CD CD A1302 CL CL A1311 1555 1555 2.50 LINK CD CD A1302 O SER A 285 1555 1555 2.29 LINK CD CD A1302 O HOH A2399 1555 1555 2.76 LINK CD CD A1303 OD2 ASP A 289 1555 1555 2.07 LINK CD CD A1303 O HOH A2400 1555 1555 2.28 LINK CD CD A1303 O HOH A2041 1555 1555 2.46 LINK CD CD A1303 O HOH A2115 1555 3555 2.54 LINK CD CD A1303 O HOH A2139 1555 3555 2.20 LINK CD CD A1304 OE2 GLU A 72 1555 1555 2.23 LINK CD CD A1304 O HOH A2221 1555 3545 2.29 LINK CD CD A1304 O HOH A2403 1555 3545 2.77 LINK CD CD A1304 OE1 GLU A 72 1555 1555 2.37 CISPEP 1 PHE A 136 PRO A 137 0 0.05 CISPEP 2 ALA A 261 PRO A 262 0 1.37 CISPEP 3 PHE A 282 PRO A 283 0 -0.01 SITE 1 AC1 5 GLU A 241 CL A1305 CL A1306 HOH A2344 SITE 2 AC1 5 HOH A2376 SITE 1 AC2 6 GLU A 48 GLY A 79 ASP A 289 HOH A2052 SITE 2 AC2 6 HOH A2064 HOH A2401 SITE 1 AC3 6 HIS A 183 CL A1307 CL A1308 HOH A2131 SITE 2 AC3 6 HOH A2253 HOH A2276 SITE 1 AC4 4 GLU A 287 CL A1309 CL A1310 HOH A2398 SITE 1 AC5 4 SER A 285 GLU A 287 CL A1311 HOH A2399 SITE 1 AC6 6 ARG A 129 ASP A 289 HOH A2041 HOH A2115 SITE 2 AC6 6 HOH A2139 HOH A2400 SITE 1 AC7 3 GLU A 72 HOH A2221 HOH A2403 SITE 1 AC8 4 THR A 264 GLN A 265 TRP A 266 CD A1298 SITE 1 AC9 4 LYS A 229 GLU A 241 CD A1298 HOH A2132 SITE 1 BC1 6 HIS A 183 PRO A 197 CD A1300 CL A1308 SITE 2 BC1 6 HOH A2141 HOH A2256 SITE 1 BC2 5 HIS A 183 ARG A 196 CD A1300 CL A1307 SITE 2 BC2 5 HOH A2289 SITE 1 BC3 4 LYS A 131 SER A 152 GLU A 287 CD A1301 SITE 1 BC4 1 CD A1301 SITE 1 BC5 4 SER A 134 THR A 284 SER A 285 CD A1302 CRYST1 56.408 61.120 75.523 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017728 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013241 0.00000