PDB Short entry for 1E33 HEADER HYDROLASE 06-JUN-00 1E33 TITLE CRYSTAL STRUCTURE OF AN ARYLSULFATASE A MUTANT P426L CAVEAT 1E33 NAG A 1 HAS WRONG CHIRALITY AT ATOM C1 NAG A 2 HAS WRONG CAVEAT 2 1E33 CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYLSULFATASE A; COMPND 3 CHAIN: P; COMPND 4 SYNONYM: ASA,CEREBROSIDE-SULFATASE; COMPND 5 EC: 3.1.6.8; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: TESTIS; SOURCE 6 CELLULAR_LOCATION: LYSOSOME; SOURCE 7 GENE: ARSA; SOURCE 8 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: MEF KEYWDS HYDROLASE, CEREBROSIDE-3-SULFATE HYDROLYSIS, LYSOSOMAL ENZYME, KEYWDS 2 FORMYLGLYCINE EXPDTA X-RAY DIFFRACTION AUTHOR R.VON BUELOW,B.SCHMIDT,T.DIERKS,K.VON FIGURA,I.USON REVDAT 11 06-DEC-23 1E33 1 HETSYN LINK REVDAT 10 29-JUL-20 1E33 1 CAVEAT COMPND REMARK HETNAM REVDAT 10 2 1 LINK SITE ATOM REVDAT 9 24-JUL-19 1E33 1 REMARK REVDAT 8 10-JUL-19 1E33 1 REMARK REVDAT 7 22-MAY-19 1E33 1 REMARK REVDAT 6 08-MAY-19 1E33 1 REMARK REVDAT 5 24-APR-19 1E33 1 SEQRES LINK REVDAT 4 11-JUL-18 1E33 1 CAVEAT COMPND SOURCE AUTHOR REVDAT 4 2 1 JRNL REMARK DBREF HET REVDAT 4 3 1 HETNAM LINK SITE ATOM REVDAT 3 16-JUN-09 1E33 1 REMARK SEQADV SEQRES MODRES REVDAT 3 2 1 HET HETNAM HETSYN FORMUL REVDAT 3 3 1 LINK SITE HETATM MASTER REVDAT 2 24-FEB-09 1E33 1 VERSN REVDAT 1 25-MAY-01 1E33 0 JRNL AUTH R.VON BULOW,B.SCHMIDT,T.DIERKS,N.SCHWABAUER,K.SCHILLING, JRNL AUTH 2 E.WEBER,I.USON,K.VON FIGURA JRNL TITL DEFECTIVE OLIGOMERIZATION OF ARYLSULFATASE A AS A CAUSE OF JRNL TITL 2 ITS INSTABILITY IN LYSOSOMES AND METACHROMATIC JRNL TITL 3 LEUKODYSTROPHY. JRNL REF J. BIOL. CHEM. V. 277 9455 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11777924 JRNL DOI 10.1074/JBC.M111993200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 33144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1476 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3555 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.080 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.020 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.053 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.099 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : 0.050 ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1E33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1290005004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-98 REMARK 200 TEMPERATURE (KELVIN) : 277.0 REMARK 200 PH : 5.40 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : GE SINGLE CRYSTAL REMARK 200 OPTICS : BENT CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29188 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1AUK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED BY VAPOR REMARK 280 DIFFUSION IN HANGING DROPS AT 291 K. SOLUTION CONTAINING 10MG/ML REMARK 280 PROTEIN, 10 MM TRIS/HCL (PH 7.4) AND 150 MM NACL WAS MIXED WITH REMARK 280 SAME VOLUME OF RESERVOIR SOLUTION, CONTAINING 100 MM NA-ACETATE REMARK 280 (PH 5.0 - 5.4) AND 10 - 13 % PEG 6000, PH 5.40, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 65.70000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 65.70000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 96.00000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 65.70000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 65.70000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 96.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 65.70000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 65.70000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 96.00000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 65.70000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 65.70000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 96.00000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 65.70000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.70000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 96.00000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 65.70000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 65.70000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 96.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 65.70000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 65.70000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 96.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 65.70000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 65.70000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 96.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAIN P ENGINEERED MUTATION PRO426LEU REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY P 444 REMARK 465 VAL P 445 REMARK 465 ALA P 446 REMARK 465 GLY P 447 REMARK 465 ASP P 504 REMARK 465 PRO P 505 REMARK 465 HIS P 506 REMARK 465 ALA P 507 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG P 19 CG CD NE CZ NH1 NH2 REMARK 470 ARG P 114 CD NE CZ NH1 NH2 REMARK 470 GLU P 131 O CG CD OE1 OE2 REMARK 470 ARG P 214 CB CG CD NE CZ NH1 NH2 REMARK 470 ASP P 216 CB CG OD1 OD2 REMARK 470 ARG P 241 CG CD NE CZ NH1 NH2 REMARK 470 GLU P 273 CG CD OE1 OE2 REMARK 470 ASN P 350 CB CG OD1 ND2 REMARK 470 GLN P 454 CG CD OE1 NE2 REMARK 470 GLN P 458 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH P 2037 O HOH P 2038 1.85 REMARK 500 O HOH P 2068 O HOH P 2070 1.90 REMARK 500 OE1 GLU P 109 O HOH P 2037 1.96 REMARK 500 O ARG P 217 O HOH P 2067 1.96 REMARK 500 O HOH P 2161 O HOH P 2162 2.02 REMARK 500 O TRP P 124 O HOH P 2039 2.07 REMARK 500 OG1 THR P 409 O HOH P 2140 2.09 REMARK 500 O HOH P 2035 O HOH P 2070 2.11 REMARK 500 OD2 ASP P 357 O HOH P 2116 2.14 REMARK 500 O LEU P 102 O HOH P 2037 2.15 REMARK 500 O HOH P 2117 O HOH P 2119 2.17 REMARK 500 OD1 ASP P 357 OG SER P 359 2.17 REMARK 500 C TRP P 124 O HOH P 2039 2.18 REMARK 500 O HOH P 2112 O HOH P 2123 2.18 REMARK 500 O GLY P 129 O HOH P 2042 2.19 REMARK 500 O HOH P 2005 O HOH P 2018 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER P 295 CB SER P 295 OG 0.086 REMARK 500 PRO P 503 CD PRO P 503 N 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE P 27 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ASP P 29 CB - CG - OD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 TYR P 33 CB - CG - CD2 ANGL. DEV. = -8.5 DEGREES REMARK 500 TYR P 33 CB - CG - CD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 CYS P 38 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 TYR P 39 N - CA - CB ANGL. DEV. = 12.4 DEGREES REMARK 500 SER P 43 N - CA - CB ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG P 58 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG P 73 CD - NE - CZ ANGL. DEV. = 21.2 DEGREES REMARK 500 ARG P 73 NE - CZ - NH1 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG P 73 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG P 80 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG P 80 NE - CZ - NH2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG P 84 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG P 97 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG P 97 NE - CZ - NH2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ALA P 108 CB - CA - C ANGL. DEV. = 11.9 DEGREES REMARK 500 GLU P 109 OE1 - CD - OE2 ANGL. DEV. = -20.5 DEGREES REMARK 500 GLU P 109 CG - CD - OE1 ANGL. DEV. = 14.6 DEGREES REMARK 500 TYR P 116 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG P 143 CD - NE - CZ ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG P 143 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG P 143 NE - CZ - NH2 ANGL. DEV. = -8.4 DEGREES REMARK 500 TYR P 149 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 CYS P 161 CB - CA - C ANGL. DEV. = 7.2 DEGREES REMARK 500 GLY P 171 C - N - CA ANGL. DEV. = -12.6 DEGREES REMARK 500 GLY P 171 N - CA - C ANGL. DEV. = 15.6 DEGREES REMARK 500 VAL P 177 N - CA - CB ANGL. DEV. = -16.5 DEGREES REMARK 500 VAL P 177 CA - CB - CG1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ILE P 179 CA - CB - CG1 ANGL. DEV. = -11.4 DEGREES REMARK 500 ILE P 179 CA - CB - CG2 ANGL. DEV. = 20.7 DEGREES REMARK 500 TRP P 193 CB - CG - CD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG P 200 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG P 200 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP P 207 CB - CG - OD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ALA P 210 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG P 217 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TYR P 230 CB - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TYR P 230 CB - CG - CD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 SER P 242 CA - C - N ANGL. DEV. = 14.9 DEGREES REMARK 500 GLY P 243 C - N - CA ANGL. DEV. = -16.7 DEGREES REMARK 500 ARG P 244 NH1 - CZ - NH2 ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG P 244 NE - CZ - NH1 ANGL. DEV. = 13.8 DEGREES REMARK 500 ASP P 249 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP P 255 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP P 267 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 THR P 279 CB - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 THR P 279 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 ASP P 281 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP P 281 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 105 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER P 67 46.40 -98.26 REMARK 500 HIS P 125 38.11 39.51 REMARK 500 VAL P 128 -69.29 -125.44 REMARK 500 TYR P 149 -169.58 -168.26 REMARK 500 ALA P 165 34.93 -152.17 REMARK 500 CYS P 172 -162.89 41.75 REMARK 500 ASN P 184 -121.19 52.44 REMARK 500 ALA P 189 149.54 -179.50 REMARK 500 GLN P 190 98.57 -167.11 REMARK 500 ARG P 214 -62.04 -24.91 REMARK 500 THR P 228 47.19 -108.01 REMARK 500 LEU P 268 7.60 -66.99 REMARK 500 MET P 289 -124.82 54.98 REMARK 500 CYS P 300 -166.53 68.75 REMARK 500 TRP P 318 83.59 -155.66 REMARK 500 TYR P 379 77.51 -111.24 REMARK 500 GLN P 401 134.07 -173.63 REMARK 500 THR P 408 -4.08 83.05 REMARK 500 CYS P 493 -178.12 -47.28 REMARK 500 HIS P 501 161.46 166.72 REMARK 500 CYS P 502 80.94 160.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO P 42 11.28 REMARK 500 PRO P 89 -12.12 REMARK 500 VAL P 128 -10.79 REMARK 500 SER P 150 -13.27 REMARK 500 ALA P 256 -13.22 REMARK 500 THR P 327 -12.05 REMARK 500 PRO P 380 -11.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG P 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP P 29 OD1 REMARK 620 2 ASP P 30 OD1 85.7 REMARK 620 3 DDZ P 69 OG1 109.6 122.7 REMARK 620 4 ASP P 281 OD1 73.8 93.9 143.2 REMARK 620 5 ASP P 281 OD2 86.7 145.9 91.1 52.1 REMARK 620 6 ASN P 282 OD1 150.4 85.1 99.0 78.9 85.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AUK RELATED DB: PDB REMARK 900 HUMAN ARYLSULFATASE A REMARK 900 RELATED ID: 1E3C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ARYLSULFATASE A MUTANT C69S SOAKED IN REMARK 900 SYNTHETIC SUBSTRATE REMARK 900 RELATED ID: 1E2S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ARYLSULFATASE A MUTANT C69A REMARK 999 REMARK 999 SEQUENCE REMARK 999 MODRES: 1E33 DDZ P 69() POST-TRANSLATIONAL MODIFICATION OF REMARK 999 CYSTEINE DBREF 1E33 P 19 507 UNP P15289 ARSA_HUMAN 19 507 SEQADV 1E33 GLU P 215 UNP P15289 GLN 215 CONFLICT SEQADV 1E33 LEU P 426 UNP P15289 PRO 426 ENGINEERED MUTATION SEQRES 1 P 489 ARG PRO PRO ASN ILE VAL LEU ILE PHE ALA ASP ASP LEU SEQRES 2 P 489 GLY TYR GLY ASP LEU GLY CYS TYR GLY HIS PRO SER SER SEQRES 3 P 489 THR THR PRO ASN LEU ASP GLN LEU ALA ALA GLY GLY LEU SEQRES 4 P 489 ARG PHE THR ASP PHE TYR VAL PRO VAL SER LEU DDZ THR SEQRES 5 P 489 PRO SER ARG ALA ALA LEU LEU THR GLY ARG LEU PRO VAL SEQRES 6 P 489 ARG MET GLY MET TYR PRO GLY VAL LEU VAL PRO SER SER SEQRES 7 P 489 ARG GLY GLY LEU PRO LEU GLU GLU VAL THR VAL ALA GLU SEQRES 8 P 489 VAL LEU ALA ALA ARG GLY TYR LEU THR GLY MET ALA GLY SEQRES 9 P 489 LYS TRP HIS LEU GLY VAL GLY PRO GLU GLY ALA PHE LEU SEQRES 10 P 489 PRO PRO HIS GLN GLY PHE HIS ARG PHE LEU GLY ILE PRO SEQRES 11 P 489 TYR SER HIS ASP GLN GLY PRO CYS GLN ASN LEU THR CYS SEQRES 12 P 489 PHE PRO PRO ALA THR PRO CYS ASP GLY GLY CYS ASP GLN SEQRES 13 P 489 GLY LEU VAL PRO ILE PRO LEU LEU ALA ASN LEU SER VAL SEQRES 14 P 489 GLU ALA GLN PRO PRO TRP LEU PRO GLY LEU GLU ALA ARG SEQRES 15 P 489 TYR MET ALA PHE ALA HIS ASP LEU MET ALA ASP ALA GLN SEQRES 16 P 489 ARG GLU ASP ARG PRO PHE PHE LEU TYR TYR ALA SER HIS SEQRES 17 P 489 HIS THR HIS TYR PRO GLN PHE SER GLY GLN SER PHE ALA SEQRES 18 P 489 GLU ARG SER GLY ARG GLY PRO PHE GLY ASP SER LEU MET SEQRES 19 P 489 GLU LEU ASP ALA ALA VAL GLY THR LEU MET THR ALA ILE SEQRES 20 P 489 GLY ASP LEU GLY LEU LEU GLU GLU THR LEU VAL ILE PHE SEQRES 21 P 489 THR ALA ASP ASN GLY PRO GLU THR MET ARG MET SER ARG SEQRES 22 P 489 GLY GLY CYS SER GLY LEU LEU ARG CYS GLY LYS GLY THR SEQRES 23 P 489 THR TYR GLU GLY GLY VAL ARG GLU PRO ALA LEU ALA PHE SEQRES 24 P 489 TRP PRO GLY HIS ILE ALA PRO GLY VAL THR HIS GLU LEU SEQRES 25 P 489 ALA SER SER LEU ASP LEU LEU PRO THR LEU ALA ALA LEU SEQRES 26 P 489 ALA GLY ALA PRO LEU PRO ASN VAL THR LEU ASP GLY PHE SEQRES 27 P 489 ASP LEU SER PRO LEU LEU LEU GLY THR GLY LYS SER PRO SEQRES 28 P 489 ARG GLN SER LEU PHE PHE TYR PRO SER TYR PRO ASP GLU SEQRES 29 P 489 VAL ARG GLY VAL PHE ALA VAL ARG THR GLY LYS TYR LYS SEQRES 30 P 489 ALA HIS PHE PHE THR GLN GLY SER ALA HIS SER ASP THR SEQRES 31 P 489 THR ALA ASP PRO ALA CYS HIS ALA SER SER SER LEU THR SEQRES 32 P 489 ALA HIS GLU PRO LEU LEU LEU TYR ASP LEU SER LYS ASP SEQRES 33 P 489 PRO GLY GLU ASN TYR ASN LEU LEU GLY GLY VAL ALA GLY SEQRES 34 P 489 ALA THR PRO GLU VAL LEU GLN ALA LEU LYS GLN LEU GLN SEQRES 35 P 489 LEU LEU LYS ALA GLN LEU ASP ALA ALA VAL THR PHE GLY SEQRES 36 P 489 PRO SER GLN VAL ALA ARG GLY GLU ASP PRO ALA LEU GLN SEQRES 37 P 489 ILE CYS CYS HIS PRO GLY CYS THR PRO ARG PRO ALA CYS SEQRES 38 P 489 CYS HIS CYS PRO ASP PRO HIS ALA MODRES 1E33 DDZ P 69 CYS MODIFIED RESIDUE HET DDZ P 69 7 HET NAG A 1 14 HET NAG A 2 14 HET MG P 603 1 HETNAM DDZ 3,3-DIHYDROXY L-ALANINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETSYN DDZ 3-HYDROXY-L-SERINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 DDZ C3 H7 N O4 FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 MG MG 2+ FORMUL 4 HOH *170(H2 O) HELIX 1 1 LEU P 36 GLY P 40 5 5 HELIX 2 2 THR P 46 GLY P 55 1 10 HELIX 3 3 THR P 70 GLY P 79 1 10 HELIX 4 4 THR P 106 ALA P 113 1 8 HELIX 5 5 LEU P 135 GLY P 140 5 6 HELIX 6 6 TRP P 193 PRO P 195 5 3 HELIX 7 7 GLY P 196 GLU P 215 1 20 HELIX 8 8 ARG P 244 LEU P 268 1 25 HELIX 9 9 LEU P 270 GLU P 272 5 3 HELIX 10 10 GLU P 285 MET P 289 5 5 HELIX 11 11 ARG P 288 GLY P 292 5 5 HELIX 12 12 TYR P 306 VAL P 310 1 5 HELIX 13 13 ASP P 335 ALA P 344 1 10 HELIX 14 14 LEU P 358 GLY P 364 1 7 HELIX 15 15 SER P 403 ASP P 407 5 5 HELIX 16 16 ASP P 411 HIS P 415 5 5 HELIX 17 17 THR P 449 VAL P 470 1 22 HELIX 18 18 GLN P 476 GLY P 480 5 5 HELIX 19 19 ASP P 482 GLN P 486 5 5 SHEET 1 A10 SER P 186 ALA P 189 0 SHEET 2 A10 LEU P 181 ALA P 183 -1 N ALA P 183 O SER P 186 SHEET 3 A10 ARG P 143 ILE P 147 -1 N GLY P 146 O LEU P 182 SHEET 4 A10 LEU P 117 GLY P 122 1 N MET P 120 O ARG P 143 SHEET 5 A10 PHE P 219 ALA P 224 1 N PHE P 220 O LEU P 117 SHEET 6 A10 ASN P 22 ALA P 28 1 N ILE P 23 O LEU P 221 SHEET 7 A10 THR P 274 ALA P 280 1 N LEU P 275 O ASN P 22 SHEET 8 A10 ALA P 314 PHE P 317 -1 N PHE P 317 O VAL P 276 SHEET 9 A10 LEU P 57 PHE P 59 -1 N PHE P 59 O ALA P 314 SHEET 10 A10 GLY P 325 THR P 327 1 N GLY P 325 O ARG P 58 SHEET 1 B 4 SER P 372 PHE P 375 0 SHEET 2 B 4 ALA P 388 THR P 391 -1 N ARG P 390 O LEU P 373 SHEET 3 B 4 TYR P 394 HIS P 397 -1 N ALA P 396 O VAL P 389 SHEET 4 B 4 LEU P 427 ASP P 430 -1 N TYR P 429 O LYS P 395 SSBOND 1 CYS P 156 CYS P 172 1555 1555 1.95 SSBOND 2 CYS P 161 CYS P 168 1555 1555 1.99 SSBOND 3 CYS P 300 CYS P 414 1555 1555 1.94 SSBOND 4 CYS P 488 CYS P 500 1555 1555 2.00 SSBOND 5 CYS P 489 CYS P 502 1555 1555 2.02 SSBOND 6 CYS P 493 CYS P 499 1555 1555 2.02 LINK C LEU P 68 N DDZ P 69 1555 1555 1.32 LINK C DDZ P 69 N THR P 70 1555 1555 1.34 LINK ND2 ASN P 184 C1 NAG A 1 1555 1555 1.46 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.42 LINK OD1 ASP P 29 MG MG P 603 1555 1555 2.32 LINK OD1 ASP P 30 MG MG P 603 1555 1555 2.38 LINK OG1 DDZ P 69 MG MG P 603 1555 1555 2.38 LINK OD1 ASP P 281 MG MG P 603 1555 1555 2.71 LINK OD2 ASP P 281 MG MG P 603 1555 1555 2.31 LINK OD1 ASN P 282 MG MG P 603 1555 1555 2.65 CISPEP 1 TYR P 88 PRO P 89 0 -8.44 CISPEP 2 PRO P 163 PRO P 164 0 2.75 CISPEP 3 GLN P 190 PRO P 191 0 -2.42 CISPEP 4 HIS P 227 THR P 228 0 -2.36 CISPEP 5 TYR P 230 PRO P 231 0 -0.80 CISPEP 6 GLU P 424 PRO P 425 0 5.44 CISPEP 7 THR P 494 PRO P 495 0 -13.41 CISPEP 8 ARG P 496 PRO P 497 0 14.94 CRYST1 131.400 131.400 192.000 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007610 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005208 0.00000