PDB Short entry for 1E4Q HEADER DEFENSIN 12-JUL-00 1E4Q TITLE SOLUTION STRUCTURE OF THE HUMAN DEFENSIN HBD-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-DEFENSIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 28-64 OF THE BETA-DEFENSIN 2 PRECURSOR; COMPND 5 SYNONYM: HBD-2 SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 TISSUE: SKIN; SOURCE 7 CELLULAR_LOCATION: EXTRACELLULAR KEYWDS DEFENSIN, HUMAN, NMR STRUCTURE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.BAUER,K.SCHWEIMER,E.KLUVER,K.ADERMANN,W.G.FORSSMANN, AUTHOR 2 P.ROESCH,H.STICHT REVDAT 3 24-FEB-09 1E4Q 1 VERSN REVDAT 2 26-NOV-01 1E4Q 1 JRNL REVDAT 1 12-JUL-01 1E4Q 0 JRNL AUTH F.BAUER,K.SCHWEIMER,E.KLUVER,J.CONEJO-GARCIA, JRNL AUTH 2 W.G.FORSSMANN,P.ROESCH,K.ADERMANN,H.STICHT JRNL TITL STRUCTURE DETERMINATION OF HUMAN AND MURINE BETA- JRNL TITL 2 DEFENSINS REVEALS STRUCTURAL CONSERVATION IN THE JRNL TITL 3 ABSENCE OF SIGNIFICANT SEQUENCE SIMILARITY JRNL REF PROTEIN SCI. V. 10 2470 2001 JRNL REFN ISSN 0961-8368 JRNL PMID 11714914 JRNL DOI 10.1110/PS.PS.24401 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION ABOVE. REMARK 4 REMARK 4 1E4Q COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-00. REMARK 100 THE PDBE ID CODE IS EBI-5048. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : COSY, TOCSY, NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600; 400 REMARK 210 SPECTROMETER MODEL : DRX600; AMX400 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NDEE, X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY, LEAST REMARK 210 RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 39 - H LYS A 59 1.47 REMARK 500 H HIS A 39 - O LYS A 59 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 41 -93.87 59.27 REMARK 500 1 PRO A 44 -162.40 -72.43 REMARK 500 2 VAL A 41 -82.78 60.73 REMARK 500 2 PRO A 44 -162.29 -70.96 REMARK 500 3 VAL A 41 -97.27 62.30 REMARK 500 3 PRO A 44 -161.33 -68.49 REMARK 500 4 VAL A 41 -108.36 62.96 REMARK 500 4 PRO A 44 -163.03 -71.22 REMARK 500 4 THR A 52 151.17 69.76 REMARK 500 5 VAL A 41 -92.51 61.26 REMARK 500 5 PRO A 44 -162.60 -71.79 REMARK 500 6 CYS A 31 19.66 58.86 REMARK 500 6 VAL A 41 -108.53 61.50 REMARK 500 6 PRO A 44 -161.44 -71.42 REMARK 500 7 VAL A 41 -104.59 62.43 REMARK 500 7 PRO A 44 -161.64 -69.10 REMARK 500 8 VAL A 41 -108.43 54.07 REMARK 500 8 PRO A 44 -162.78 -70.16 REMARK 500 8 THR A 52 134.05 -34.65 REMARK 500 9 VAL A 41 -88.77 -117.91 REMARK 500 9 PRO A 44 -163.04 -69.95 REMARK 500 10 VAL A 41 -100.73 61.02 REMARK 500 10 PRO A 44 -160.05 -69.45 REMARK 500 11 VAL A 41 -87.54 61.57 REMARK 500 11 PRO A 44 -162.18 -71.02 REMARK 500 12 VAL A 41 -105.18 62.11 REMARK 500 12 PRO A 44 -162.94 -67.60 REMARK 500 13 CYS A 31 19.29 57.28 REMARK 500 13 VAL A 41 -84.02 59.71 REMARK 500 13 PRO A 44 -162.52 -70.39 REMARK 500 13 THR A 52 140.09 -29.52 REMARK 500 14 VAL A 41 -112.15 55.82 REMARK 500 14 PRO A 44 -162.54 -70.71 REMARK 500 15 VAL A 41 -109.35 59.15 REMARK 500 15 PRO A 44 -162.76 -68.41 REMARK 500 16 CYS A 31 18.38 56.61 REMARK 500 16 VAL A 41 -105.94 62.99 REMARK 500 16 PRO A 44 -162.16 -68.71 REMARK 500 17 VAL A 29 172.52 56.80 REMARK 500 17 THR A 30 28.21 39.16 REMARK 500 17 VAL A 41 -84.62 64.24 REMARK 500 17 PRO A 44 -160.63 -70.18 REMARK 500 18 VAL A 41 -108.37 61.84 REMARK 500 18 PRO A 44 -162.56 -71.29 REMARK 500 19 VAL A 41 -84.23 57.18 REMARK 500 19 PRO A 44 -162.23 -70.55 REMARK 500 20 VAL A 41 -115.35 54.74 REMARK 500 20 PRO A 44 -161.88 -71.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 45 0.30 SIDE CHAIN REMARK 500 1 ARG A 46 0.31 SIDE CHAIN REMARK 500 2 ARG A 45 0.30 SIDE CHAIN REMARK 500 2 ARG A 46 0.28 SIDE CHAIN REMARK 500 3 ARG A 45 0.31 SIDE CHAIN REMARK 500 3 ARG A 46 0.32 SIDE CHAIN REMARK 500 4 ARG A 45 0.20 SIDE CHAIN REMARK 500 5 ARG A 45 0.16 SIDE CHAIN REMARK 500 5 ARG A 46 0.26 SIDE CHAIN REMARK 500 6 ARG A 45 0.26 SIDE CHAIN REMARK 500 6 ARG A 46 0.20 SIDE CHAIN REMARK 500 7 ARG A 45 0.23 SIDE CHAIN REMARK 500 7 ARG A 46 0.28 SIDE CHAIN REMARK 500 8 ARG A 45 0.24 SIDE CHAIN REMARK 500 8 ARG A 46 0.31 SIDE CHAIN REMARK 500 9 ARG A 45 0.29 SIDE CHAIN REMARK 500 9 ARG A 46 0.31 SIDE CHAIN REMARK 500 10 ARG A 45 0.30 SIDE CHAIN REMARK 500 10 ARG A 46 0.24 SIDE CHAIN REMARK 500 11 ARG A 46 0.29 SIDE CHAIN REMARK 500 12 ARG A 45 0.30 SIDE CHAIN REMARK 500 12 ARG A 46 0.32 SIDE CHAIN REMARK 500 13 ARG A 45 0.13 SIDE CHAIN REMARK 500 13 ARG A 46 0.10 SIDE CHAIN REMARK 500 14 ARG A 45 0.30 SIDE CHAIN REMARK 500 14 ARG A 46 0.17 SIDE CHAIN REMARK 500 15 ARG A 45 0.26 SIDE CHAIN REMARK 500 15 ARG A 46 0.31 SIDE CHAIN REMARK 500 16 ARG A 45 0.32 SIDE CHAIN REMARK 500 16 ARG A 46 0.31 SIDE CHAIN REMARK 500 17 ARG A 45 0.26 SIDE CHAIN REMARK 500 17 ARG A 46 0.32 SIDE CHAIN REMARK 500 18 ARG A 45 0.14 SIDE CHAIN REMARK 500 18 ARG A 46 0.24 SIDE CHAIN REMARK 500 19 ARG A 45 0.32 SIDE CHAIN REMARK 500 19 ARG A 46 0.27 SIDE CHAIN REMARK 500 20 ARG A 45 0.16 SIDE CHAIN REMARK 500 20 ARG A 46 0.27 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1E4Q A 28 64 UNP O15263 BD02_HUMAN 28 64 SEQRES 1 A 37 PRO VAL THR CYS LEU LYS SER GLY ALA ILE CYS HIS PRO SEQRES 2 A 37 VAL PHE CYS PRO ARG ARG TYR LYS GLN ILE GLY THR CYS SEQRES 3 A 37 GLY LEU PRO GLY THR LYS CYS CYS LYS LYS PRO SHEET 1 A 3 ILE A 37 PRO A 40 0 SHEET 2 A 3 THR A 58 LYS A 62 -1 O LYS A 59 N HIS A 39 SHEET 3 A 3 LYS A 48 GLN A 49 -1 O LYS A 48 N LYS A 62 SSBOND 1 CYS A 31 CYS A 60 1555 1555 2.02 SSBOND 2 CYS A 38 CYS A 53 1555 1555 2.02 SSBOND 3 CYS A 43 CYS A 61 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000