PDB Short entry for 1E6J HEADER VIRAL PROTEIN 18-AUG-00 1E6J TITLE CRYSTAL STRUCTURE OF HIV-1 CAPSID PROTEIN (P24) IN COMPLEX WITH TITLE 2 FAB13B5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: HEAVY CHAIN 1-219; COMPND 5 OTHER_DETAILS: OBTAINED BY PAPAIN CLEAVAGE (FAB); COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: IMMUNOGLOBULIN; COMPND 8 CHAIN: L; COMPND 9 FRAGMENT: LIGHT CHAIN 1-210; COMPND 10 OTHER_DETAILS: OBTAINED BY PAPAIN CLEAVAGE (FAB); COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: CAPSID PROTEIN P24; COMPND 13 CHAIN: P; COMPND 14 FRAGMENT: GAG POLYPROTEIN RESIDUES 143-352; COMPND 15 SYNONYM: CA; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: HIS6 TAG AT N-TERM, PRO1 AND ILE2 DELETED, C-TERMINUS COMPND 18 MODIFIED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HIV-1 M\:B_HXB2R; SOURCE 11 ORGANISM_TAXID: 11706; SOURCE 12 VARIANT: CLONE 12; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 OTHER_DETAILS: SEE REFERENCE 2 KEYWDS HIV CAPSID PROTEIN (P24), P24, FAB, HIV-1, VIRUS ASSEMBLY, CAPSID, KEYWDS 2 CA, ANTIGEN, ANTIBODY, PROTEIN-PROTEIN INTERACTIONS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.BERTHET-COLOMINAS,S.MONACO,A.NOVELLI,G.SIBAI,F.MALLET,S.CUSACK REVDAT 7 13-DEC-23 1E6J 1 REMARK REVDAT 6 15-MAY-19 1E6J 1 REMARK REVDAT 5 08-MAY-19 1E6J 1 REMARK REVDAT 4 12-MAR-14 1E6J 1 HEADER COMPND SOURCE KEYWDS REVDAT 4 2 1 AUTHOR JRNL REMARK VERSN REVDAT 4 3 1 DBREF MASTER REVDAT 3 24-FEB-09 1E6J 1 VERSN REVDAT 2 11-DEC-00 1E6J 1 REMARK REVDAT 1 27-NOV-00 1E6J 0 JRNL AUTH S.MONACO-MALBET,C.BERTHET-COLOMINAS,A.NOVELLI,N.BATTAI, JRNL AUTH 2 N.PIGA,V.CHEYNET,F.MALLET,S.CUSACK JRNL TITL MUTUAL CONFORMATIONAL ADAPTATIONS IN ANTIGEN AND ANTIBODY JRNL TITL 2 UPON COMPLEX FORMATION BETWEEN AN FAB AND HIV-1 CAPSID JRNL TITL 3 PROTEIN P24 JRNL REF STRUCTURE V. 8 1069 2000 JRNL REFN ISSN 0969-2126 JRNL PMID 11080628 JRNL DOI 10.1016/S0969-2126(00)00507-4 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.BERTHET-COLOMINAS,S.MONACO,A.NOVELLI,G.SIBAI,F.MALLET, REMARK 1 AUTH 2 S.CUSACK REMARK 1 TITL HEAD-TO-TAIL DIMERS AND INTERDOMAIN FLEXIBILITY REVEALED BY REMARK 1 TITL 2 THE CRYSTAL STRUCTURE OF HIV-1 CAPSID PROTEIN (P24) REMARK 1 TITL 3 COMPLEXED WITH A MONOCLONAL ANTIBODY FAB REMARK 1 REF EMBO J. V. 18 1124 1999 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 10064580 REMARK 1 DOI 10.1093/EMBOJ/18.5.1124 REMARK 1 REFERENCE 2 REMARK 1 AUTH V.CHEYNET,B.VERRIER,F.MALLET REMARK 1 TITL OVEREXPRESSION OF HIV-1 PROTEINS IN E. COLI BY A MODIFIED REMARK 1 TITL 2 EXPRESSION VECTOR AND THEIR ONE-STEP PURIFICATION REMARK 1 REF PROTEIN EXPR.PURIF. V. 4 367 1993 REMARK 1 REFN ISSN 1046-5928 REMARK 1 PMID 8251747 REMARK 1 DOI 10.1006/PREP.1993.1048 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.7 REMARK 3 NUMBER OF REFLECTIONS : 14740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 11.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1528 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.201 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PARTIALLY DISORDERED REGIONS: L152 - REMARK 3 L155 AND H134 - H140 MISSING RESIDUES IN P24: HIS TAG, 12 FIRSTS REMARK 3 AA, P146, P86 TO P95 REMARK 4 REMARK 4 1E6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1290005216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14742 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 27.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 33.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27600 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: FAB13B5, 1AFV, 1AM3 REMARK 200 REMARK 200 REMARK: PATTERSON CORRELATION ALGORITHM OF XPLOR USED IN REMARK 200 CONJUNCTION WITH AMORE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 7MG/ML IN 7% PEG8000, 0.1M REMARK 280 TRIS-HCL PH=7.5, 5MM DTT, 0.5MM K2PTCL4 AT 4C USING THE HANGING REMARK 280 DROP SYSTEM, PH 7.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.54000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.54000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO H 219 O REMARK 470 ASN L 210 O REMARK 470 GLY P 220 O REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY H 134 REMARK 475 SER H 135 REMARK 475 ALA H 136 REMARK 475 ALA H 137 REMARK 475 THR H 139 REMARK 475 ASN H 140 REMARK 475 GLU L 152 REMARK 475 ARG L 153 REMARK 475 ASN L 155 REMARK 475 VAL P 11 REMARK 475 HIS P 12 REMARK 475 VAL P 86 REMARK 475 HIS P 87 REMARK 475 ALA P 88 REMARK 475 GLY P 89 REMARK 475 PRO P 90 REMARK 475 ILE P 91 REMARK 475 ALA P 92 REMARK 475 PRO P 93 REMARK 475 GLY P 94 REMARK 475 SER P 146 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP H 66 CG OD1 OD2 REMARK 480 GLN H 138 N CA C O CB CG CD REMARK 480 GLN H 138 OE1 NE2 REMARK 480 GLN L 154 N CA C O CB CG CD REMARK 480 GLN L 154 OE1 NE2 REMARK 480 GLU P 29 CG CD OE1 OE2 REMARK 480 LYS P 30 CG CD CE NZ REMARK 480 GLN P 95 N CA C O CB CG CD REMARK 480 GLN P 95 OE1 NE2 REMARK 480 ASP P 166 CG OD1 OD2 REMARK 480 GLN P 176 CG CD OE1 NE2 REMARK 480 LYS P 182 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN H 43 48.74 -154.57 REMARK 500 LEU H 45 104.66 70.92 REMARK 500 LYS H 67 -51.57 -159.21 REMARK 500 ALA H 92 -171.20 -176.50 REMARK 500 ARG H 102 -105.47 -125.25 REMARK 500 ALA H 136 -165.47 86.91 REMARK 500 GLN H 138 96.48 175.58 REMARK 500 SER H 167 -43.02 -144.15 REMARK 500 SER H 168 -38.29 -37.72 REMARK 500 GLN H 178 -55.16 -122.88 REMARK 500 SER H 179 -69.12 -154.39 REMARK 500 GLU L 49 60.61 27.11 REMARK 500 ILE L 50 -53.98 69.87 REMARK 500 ALA L 83 -169.87 -177.94 REMARK 500 ASN L 136 75.31 43.69 REMARK 500 PRO L 139 179.40 -59.78 REMARK 500 ASN L 155 170.72 83.90 REMARK 500 ASN L 188 -39.96 -142.17 REMARK 500 LYS L 197 2.81 -64.03 REMARK 500 SER L 199 149.60 -170.43 REMARK 500 ALA P 31 -97.51 54.66 REMARK 500 PHE P 32 30.90 -144.79 REMARK 500 HIS P 62 28.27 49.98 REMARK 500 VAL P 86 -93.60 7.63 REMARK 500 PRO P 90 81.15 -65.56 REMARK 500 ALA P 92 100.78 72.59 REMARK 500 GLN P 95 -73.51 -139.54 REMARK 500 THR P 119 75.54 -115.49 REMARK 500 PRO P 125 61.60 -68.20 REMARK 500 ALA P 174 59.86 -116.06 REMARK 500 GLN P 219 54.48 -95.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AFV RELATED DB: PDB REMARK 900 HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN REMARK 900 RELATED ID: 1A80 RELATED DB: PDB REMARK 900 HIV CAPSID C-TERMINAL DOMAIN REMARK 900 RELATED ID: 1TAM RELATED DB: PDB REMARK 900 HUMAN IMMUNODEFICIENCY VIRUS, NMR, MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 1ESK RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF NCP7 FROM HIV-1 REMARK 900 RELATED ID: 1E6O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FAB13B5 AGAINST HIV-1 CAPSID PROTEIN P24 DBREF 1E6J H 1 219 PDB 1E6J 1E6J 1 219 DBREF 1E6J L 1 210 PDB 1E6J 1E6J 1 210 DBREF 1E6J P 11 220 UNP P04591 GAG_HV1H2 143 352 SEQRES 1 H 219 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU ALA ARG SEQRES 2 H 219 PRO GLY ALA SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 H 219 TYR THR PHE THR SER TYR THR MET HIS TRP VAL LYS GLN SEQRES 4 H 219 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY TYR ILE ASN SEQRES 5 H 219 PRO SER SER GLY TYR SER ASN TYR ASN GLN LYS PHE LYS SEQRES 6 H 219 ASP LYS ALA THR LEU THR ALA ASP LYS SER SER SER THR SEQRES 7 H 219 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 219 ALA VAL TYR TYR CYS SER ARG PRO VAL VAL ARG LEU GLY SEQRES 9 H 219 TYR ASN PHE ASP TYR TRP GLY GLN GLY SER THR LEU THR SEQRES 10 H 219 VAL SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO SEQRES 11 H 219 LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL SEQRES 12 H 219 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO SEQRES 13 H 219 VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY SEQRES 14 H 219 VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR SEQRES 15 H 219 THR LEU SER SER SER VAL THR VAL PRO SER SER THR TRP SEQRES 16 H 219 PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SEQRES 17 H 219 SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 1 L 210 GLU ILE VAL LEU THR GLN SER PRO ALA ILE THR ALA ALA SEQRES 2 L 210 SER LEU GLY GLN LYS VAL THR ILE THR CYS SER ALA SER SEQRES 3 L 210 SER SER VAL SER TYR MET HIS TRP TYR GLN GLN LYS SER SEQRES 4 L 210 GLY THR SER PRO LYS PRO TRP ILE TYR GLU ILE SER LYS SEQRES 5 L 210 LEU ALA SER GLY VAL PRO ALA ARG PHE SER GLY SER GLY SEQRES 6 L 210 SER GLY THR SER TYR SER LEU THR ILE SER SER MET GLU SEQRES 7 L 210 ALA GLU ASP ALA ALA ILE TYR TYR CYS GLN GLN TRP ASN SEQRES 8 L 210 TYR PRO PHE THR PHE GLY SER GLY THR LYS LEU GLU ILE SEQRES 9 L 210 LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE PRO SEQRES 10 L 210 PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER VAL SEQRES 11 L 210 VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE ASN SEQRES 12 L 210 VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN GLY SEQRES 13 L 210 VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SER SEQRES 14 L 210 THR TYR SER MET SER SER THR LEU THR LEU THR LYS ASP SEQRES 15 L 210 GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA THR SEQRES 16 L 210 HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE ASN SEQRES 17 L 210 ARG ASN SEQRES 1 P 210 VAL HIS GLN ALA ILE SER PRO ARG THR LEU ASN ALA TRP SEQRES 2 P 210 VAL LYS VAL VAL GLU GLU LYS ALA PHE SER PRO GLU VAL SEQRES 3 P 210 ILE PRO MET PHE SER ALA LEU SER GLU GLY ALA THR PRO SEQRES 4 P 210 GLN ASP LEU ASN THR MET LEU ASN THR VAL GLY GLY HIS SEQRES 5 P 210 GLN ALA ALA MET GLN MET LEU LYS GLU THR ILE ASN GLU SEQRES 6 P 210 GLU ALA ALA GLU TRP ASP ARG VAL HIS PRO VAL HIS ALA SEQRES 7 P 210 GLY PRO ILE ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SEQRES 8 P 210 SER ASP ILE ALA GLY THR THR SER THR LEU GLN GLU GLN SEQRES 9 P 210 ILE GLY TRP MET THR ASN ASN PRO PRO ILE PRO VAL GLY SEQRES 10 P 210 GLU ILE TYR LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS SEQRES 11 P 210 ILE VAL ARG MET TYR SER PRO THR SER ILE LEU ASP ILE SEQRES 12 P 210 ARG GLN GLY PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP SEQRES 13 P 210 ARG PHE TYR LYS THR LEU ARG ALA GLU GLN ALA SER GLN SEQRES 14 P 210 GLU VAL LYS ASN TRP MET THR GLU THR LEU LEU VAL GLN SEQRES 15 P 210 ASN ALA ASN PRO ASP CYS LYS THR ILE LEU LYS ALA LEU SEQRES 16 P 210 GLY PRO ALA ALA THR LEU GLU GLU MET MET THR ALA CYS SEQRES 17 P 210 GLN GLY HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 GLN H 62 LYS H 65 5 4 HELIX 3 3 LYS H 74 SER H 76 5 3 HELIX 4 4 THR H 87 SER H 91 5 5 HELIX 5 5 SER H 193 TRP H 195 5 3 HELIX 6 6 PRO H 207 SER H 210 5 4 HELIX 7 7 GLU L 78 ALA L 82 5 5 HELIX 8 8 SER L 119 SER L 125 1 7 HELIX 9 9 LYS L 181 ARG L 186 1 6 HELIX 10 10 SER P 16 ALA P 31 1 16 HELIX 11 11 GLU P 35 SER P 44 1 10 HELIX 12 12 THR P 48 THR P 58 1 11 HELIX 13 13 HIS P 62 HIS P 84 1 23 HELIX 14 14 ARG P 100 ALA P 105 1 6 HELIX 15 15 THR P 110 THR P 119 1 10 HELIX 16 16 PRO P 125 SER P 146 1 22 HELIX 17 17 SER P 149 ILE P 153 5 5 HELIX 18 18 PRO P 160 ALA P 174 1 15 HELIX 19 19 SER P 178 ASN P 193 1 16 HELIX 20 20 ASN P 195 GLY P 206 1 12 HELIX 21 21 THR P 210 CYS P 218 1 9 SHEET 1 A 4 GLN H 3 GLN H 6 0 SHEET 2 A 4 SER H 17 SER H 25 -1 N SER H 25 O GLN H 3 SHEET 3 A 4 THR H 78 SER H 84 -1 N LEU H 83 O VAL H 18 SHEET 4 A 4 ALA H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 B 6 GLU H 10 ALA H 12 0 SHEET 2 B 6 SER H 114 VAL H 118 1 N THR H 117 O GLU H 10 SHEET 3 B 6 ALA H 92 SER H 97 -1 N TYR H 94 O SER H 114 SHEET 4 B 6 THR H 33 GLN H 39 -1 N GLN H 39 O VAL H 93 SHEET 5 B 6 GLU H 46 ASN H 52 -1 N ILE H 51 O MET H 34 SHEET 6 B 6 SER H 58 TYR H 60 -1 N ASN H 59 O TYR H 50 SHEET 1 C 4 SER H 127 LEU H 131 0 SHEET 2 C 4 MET H 142 TYR H 152 -1 N LYS H 150 O SER H 127 SHEET 3 C 4 TYR H 182 PRO H 191 -1 N VAL H 190 O VAL H 143 SHEET 4 C 4 VAL H 170 THR H 172 -1 N HIS H 171 O SER H 187 SHEET 1 D 3 THR H 158 TRP H 161 0 SHEET 2 D 3 THR H 201 HIS H 206 -1 N ALA H 205 O THR H 158 SHEET 3 D 3 THR H 211 LYS H 216 -1 N LYS H 215 O CYS H 202 SHEET 1 E 4 LEU L 4 SER L 7 0 SHEET 2 E 4 VAL L 19 ALA L 25 -1 N SER L 24 O THR L 5 SHEET 3 E 4 SER L 69 ILE L 74 -1 N ILE L 74 O VAL L 19 SHEET 4 E 4 PHE L 61 SER L 66 -1 N SER L 66 O SER L 69 SHEET 1 F 5 ILE L 10 ALA L 13 0 SHEET 2 F 5 THR L 100 ILE L 104 1 N LYS L 101 O THR L 11 SHEET 3 F 5 ALA L 83 GLN L 89 -1 N TYR L 85 O THR L 100 SHEET 4 F 5 MET L 32 GLN L 37 -1 N GLN L 37 O ILE L 84 SHEET 5 F 5 LYS L 44 ILE L 47 -1 N ILE L 47 O TRP L 34 SHEET 1 G 4 THR L 112 PHE L 116 0 SHEET 2 G 4 GLY L 127 ASN L 135 -1 N ASN L 135 O THR L 112 SHEET 3 G 4 MET L 173 THR L 180 -1 N LEU L 179 O ALA L 128 SHEET 4 G 4 VAL L 157 TRP L 161 -1 N SER L 160 O SER L 174 SHEET 1 H 3 ILE L 142 ILE L 148 0 SHEET 2 H 3 SER L 189 HIS L 196 -1 N THR L 195 O ASN L 143 SHEET 3 H 3 ILE L 203 ASN L 208 -1 N PHE L 207 O TYR L 190 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.76 SSBOND 2 CYS H 147 CYS H 202 1555 1555 2.75 SSBOND 3 CYS L 23 CYS L 87 1555 1555 2.76 SSBOND 4 CYS L 132 CYS L 192 1555 1555 2.67 CISPEP 1 PHE H 153 PRO H 154 0 -0.52 CISPEP 2 GLU H 155 PRO H 156 0 -0.48 CISPEP 3 TRP H 195 PRO H 196 0 -0.29 CISPEP 4 SER L 7 PRO L 8 0 0.26 CISPEP 5 TYR L 92 PRO L 93 0 0.23 CISPEP 6 TYR L 138 PRO L 139 0 1.06 CISPEP 7 ASN P 121 PRO P 122 0 -0.14 CRYST1 193.080 45.600 132.470 90.00 132.41 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005179 0.000000 0.004731 0.00000 SCALE2 0.000000 0.021930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010224 0.00000