PDB Short entry for 1EBO HEADER VIRAL PROTEIN 03-NOV-98 1EBO TITLE CRYSTAL STRUCTURE OF THE EBOLA VIRUS MEMBRANE-FUSION SUBUNIT, GP2, TITLE 2 FROM THE ENVELOPE GLYCOPROTEIN ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EBOLA VIRUS ENVELOPE PROTEIN CHIMERA CONSISTING OF A COMPND 3 FRAGMENT OF GCN4 ZIPPER CLONED N-TERMINAL TO A FRAGMENT OF GP2; COMPND 4 CHAIN: A, B, C, D, E, F; COMPND 5 FRAGMENT: GCN4 IS RESIDUE 3 - 32, GP2 IS RESIDUE 51 - 133; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EBOLA VIRUS SP.; SOURCE 3 ORGANISM_TAXID: 205488; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE FUSION SUBUNIT, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.WEISSENHORN,A.CARFI,K.H.LEE,J.J.SKEHEL,D.C.WILEY REVDAT 5 21-DEC-22 1EBO 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 1EBO 1 VERSN REVDAT 3 01-APR-03 1EBO 1 JRNL REVDAT 2 02-JUL-99 1EBO 3 SEQRES DBREF SEQADV REMARK REVDAT 1 02-JUL-99 1EBO 0 JRNL AUTH W.WEISSENHORN,A.CARFI,K.H.LEE,J.J.SKEHEL,D.C.WILEY JRNL TITL CRYSTAL STRUCTURE OF THE EBOLA VIRUS MEMBRANE FUSION JRNL TITL 2 SUBUNIT, GP2, FROM THE ENVELOPE GLYCOPROTEIN ECTODOMAIN. JRNL REF MOL.CELL V. 2 605 1998 JRNL REFN ISSN 1097-2765 JRNL PMID 9844633 JRNL DOI 10.1016/S1097-2765(00)80159-8 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 87380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT WAS CONCLUDED USING CNS. A REMARK 3 BULK SOLVENT CORRECTION WAS APPLIED REMARK 4 REMARK 4 1EBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-98. REMARK 100 THE DEPOSITION ID IS D_1000000019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-98 REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-13 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17123 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.07 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.85100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.34550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.85100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.34550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -164.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -177.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -328.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 3.39238 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 16.34550 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 147.36109 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 THR A 133 REMARK 465 LEU A 134 REMARK 465 PRO A 135 REMARK 465 ASP A 136 REMARK 465 GLN A 137 REMARK 465 GLY A 138 REMARK 465 ASP A 139 REMARK 465 ASN A 140 REMARK 465 ASP A 141 REMARK 465 ASN A 142 REMARK 465 TRP A 143 REMARK 465 TRP A 144 REMARK 465 THR A 145 REMARK 465 GLY A 146 REMARK 465 TRP A 147 REMARK 465 ARG A 148 REMARK 465 GLN A 149 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 THR B 133 REMARK 465 LEU B 134 REMARK 465 PRO B 135 REMARK 465 ASP B 136 REMARK 465 GLN B 137 REMARK 465 GLY B 138 REMARK 465 ASP B 139 REMARK 465 ASN B 140 REMARK 465 ASP B 141 REMARK 465 ASN B 142 REMARK 465 TRP B 143 REMARK 465 TRP B 144 REMARK 465 THR B 145 REMARK 465 GLY B 146 REMARK 465 TRP B 147 REMARK 465 ARG B 148 REMARK 465 GLN B 149 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 LYS C 132 REMARK 465 THR C 133 REMARK 465 LEU C 134 REMARK 465 PRO C 135 REMARK 465 ASP C 136 REMARK 465 GLN C 137 REMARK 465 GLY C 138 REMARK 465 ASP C 139 REMARK 465 ASN C 140 REMARK 465 ASP C 141 REMARK 465 ASN C 142 REMARK 465 TRP C 143 REMARK 465 TRP C 144 REMARK 465 THR C 145 REMARK 465 GLY C 146 REMARK 465 TRP C 147 REMARK 465 ARG C 148 REMARK 465 GLN C 149 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 THR D 133 REMARK 465 LEU D 134 REMARK 465 PRO D 135 REMARK 465 ASP D 136 REMARK 465 GLN D 137 REMARK 465 GLY D 138 REMARK 465 ASP D 139 REMARK 465 ASN D 140 REMARK 465 ASP D 141 REMARK 465 ASN D 142 REMARK 465 TRP D 143 REMARK 465 TRP D 144 REMARK 465 THR D 145 REMARK 465 GLY D 146 REMARK 465 TRP D 147 REMARK 465 ARG D 148 REMARK 465 GLN D 149 REMARK 465 MET E 1 REMARK 465 LYS E 2 REMARK 465 LYS E 132 REMARK 465 THR E 133 REMARK 465 LEU E 134 REMARK 465 PRO E 135 REMARK 465 ASP E 136 REMARK 465 GLN E 137 REMARK 465 GLY E 138 REMARK 465 ASP E 139 REMARK 465 ASN E 140 REMARK 465 ASP E 141 REMARK 465 ASN E 142 REMARK 465 TRP E 143 REMARK 465 TRP E 144 REMARK 465 THR E 145 REMARK 465 GLY E 146 REMARK 465 TRP E 147 REMARK 465 ARG E 148 REMARK 465 GLN E 149 REMARK 465 MET F 1 REMARK 465 LYS F 2 REMARK 465 LEU F 134 REMARK 465 PRO F 135 REMARK 465 ASP F 136 REMARK 465 GLN F 137 REMARK 465 GLY F 138 REMARK 465 ASP F 139 REMARK 465 ASN F 140 REMARK 465 ASP F 141 REMARK 465 ASN F 142 REMARK 465 TRP F 143 REMARK 465 TRP F 144 REMARK 465 THR F 145 REMARK 465 GLY F 146 REMARK 465 TRP F 147 REMARK 465 ARG F 148 REMARK 465 GLN F 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 ILE A 29 CG1 CG2 CD1 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 ILE B 29 CG1 CG2 CD1 REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 ARG B 58 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 95 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 LYS C 27 CG CD CE NZ REMARK 470 ILE C 29 CG1 CG2 CD1 REMARK 470 GLU C 31 CG CD OE1 OE2 REMARK 470 ASP C 131 CG OD1 OD2 REMARK 470 LYS D 27 CG CD CE NZ REMARK 470 ILE D 29 CG1 CG2 CD1 REMARK 470 GLU D 31 CG CD OE1 OE2 REMARK 470 ILE D 54 CG1 CG2 CD1 REMARK 470 ARG D 73 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 95 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 108 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 116 CG CD CE NZ REMARK 470 LYS D 132 CG CD CE NZ REMARK 470 ARG E 24 CG CD NE CZ NH1 NH2 REMARK 470 ILE E 29 CG1 CG2 CD1 REMARK 470 GLU E 31 CG CD OE1 OE2 REMARK 470 LEU E 53 CG CD1 CD2 REMARK 470 GLU E 55 CG CD OE1 OE2 REMARK 470 ARG E 95 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 27 CG CD CE NZ REMARK 470 ILE F 29 CG1 CG2 CD1 REMARK 470 GLU F 31 CG CD OE1 OE2 REMARK 470 ARG F 95 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 132 CG CD CE NZ REMARK 470 THR F 133 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 131 C LYS A 132 N -0.197 REMARK 500 GLN B 59 CG GLN B 59 CD -0.156 REMARK 500 ARG B 73 CD ARG B 73 NE -0.207 REMARK 500 GLU D 55 CB GLU D 55 CG -0.140 REMARK 500 LYS E 27 CB LYS E 27 CG -0.211 REMARK 500 ARG E 108 CD ARG E 108 NE -0.275 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 27 CB - CA - C ANGL. DEV. = 13.2 DEGREES REMARK 500 GLY A 52 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 ARG B 73 CD - NE - CZ ANGL. DEV. = 19.6 DEGREES REMARK 500 GLU D 55 CA - CB - CG ANGL. DEV. = 22.4 DEGREES REMARK 500 HIS E 127 CB - CG - CD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 29 -55.12 -23.27 REMARK 500 GLU A 31 5.24 -60.17 REMARK 500 ARG A 95 39.80 -71.90 REMARK 500 TRP A 96 8.46 -160.46 REMARK 500 ILE B 29 16.98 -64.84 REMARK 500 ALA B 32 -2.88 -155.04 REMARK 500 ASP B 51 -71.79 -73.82 REMARK 500 ARG B 95 37.03 -71.55 REMARK 500 TRP B 96 9.51 -158.65 REMARK 500 GLU C 31 -74.15 -73.75 REMARK 500 ALA C 32 -16.24 -33.69 REMARK 500 ARG C 95 38.40 -78.22 REMARK 500 TRP C 96 6.62 -158.16 REMARK 500 ALA D 32 9.65 -51.56 REMARK 500 ARG D 95 39.08 -84.31 REMARK 500 TRP D 96 7.04 -158.97 REMARK 500 ASP D 131 -88.00 -102.79 REMARK 500 ARG E 95 41.43 -78.95 REMARK 500 TRP E 96 9.36 -161.05 REMARK 500 GLU F 31 0.84 -47.82 REMARK 500 ALA F 32 31.30 -141.12 REMARK 500 ARG F 95 40.10 -77.30 REMARK 500 TRP F 96 8.08 -160.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 150 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 112 NE2 REMARK 620 2 HIS D 127 NE2 109.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 150 DBREF 1EBO A 1 149 UNP Q913A3 Q913A3_9MONO 1 132 DBREF 1EBO B 1 149 GB 4389202 1EBOB 1 132 DBREF 1EBO C 1 149 GB 4389203 1EBOC 1 132 DBREF 1EBO D 1 149 GB 4389204 1EBOD 1 132 DBREF 1EBO E 1 149 GB 4389205 1EBOE 1 132 DBREF 1EBO F 1 149 GB 4389206 1EBOF 1 132 SEQADV 1EBO A UNP Q913A3 GLU 57 DELETION SEQADV 1EBO B GB 4389202 GLU 57 DELETION SEQADV 1EBO C GB 4389203 GLU 57 DELETION SEQADV 1EBO D GB 4389204 GLU 57 DELETION SEQADV 1EBO E GB 4389205 GLU 57 DELETION SEQADV 1EBO F GB 4389206 GLU 57 DELETION SEQRES 1 A 131 MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE LEU SER SEQRES 2 A 131 LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG ILE LYS SEQRES 3 A 131 LYS LEU ILE GLY GLU ALA ASP GLY LEU ILE GLU GLY LEU SEQRES 4 A 131 ARG GLN LEU ALA ASN GLU THR THR GLN ALA LEU GLN LEU SEQRES 5 A 131 PHE LEU ARG ALA THR THR GLU LEU ARG THR PHE SER ILE SEQRES 6 A 131 LEU ASN ARG LYS ALA ILE ASP PHE LEU LEU GLN ARG TRP SEQRES 7 A 131 GLY GLY THR CYS HIS ILE LEU GLY PRO ASP CYS ARG ILE SEQRES 8 A 131 GLU PRO HIS ASP TRP THR LYS ASN ILE THR ASP LYS ILE SEQRES 9 A 131 ASP GLN ILE ILE HIS ASP PHE VAL ASP LYS THR LEU PRO SEQRES 10 A 131 ASP GLN GLY ASP ASN ASP ASN TRP TRP THR GLY TRP ARG SEQRES 11 A 131 GLN SEQRES 1 B 131 MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE LEU SER SEQRES 2 B 131 LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG ILE LYS SEQRES 3 B 131 LYS LEU ILE GLY GLU ALA ASP GLY LEU ILE GLU GLY LEU SEQRES 4 B 131 ARG GLN LEU ALA ASN GLU THR THR GLN ALA LEU GLN LEU SEQRES 5 B 131 PHE LEU ARG ALA THR THR GLU LEU ARG THR PHE SER ILE SEQRES 6 B 131 LEU ASN ARG LYS ALA ILE ASP PHE LEU LEU GLN ARG TRP SEQRES 7 B 131 GLY GLY THR CYS HIS ILE LEU GLY PRO ASP CYS ARG ILE SEQRES 8 B 131 GLU PRO HIS ASP TRP THR LYS ASN ILE THR ASP LYS ILE SEQRES 9 B 131 ASP GLN ILE ILE HIS ASP PHE VAL ASP LYS THR LEU PRO SEQRES 10 B 131 ASP GLN GLY ASP ASN ASP ASN TRP TRP THR GLY TRP ARG SEQRES 11 B 131 GLN SEQRES 1 C 131 MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE LEU SER SEQRES 2 C 131 LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG ILE LYS SEQRES 3 C 131 LYS LEU ILE GLY GLU ALA ASP GLY LEU ILE GLU GLY LEU SEQRES 4 C 131 ARG GLN LEU ALA ASN GLU THR THR GLN ALA LEU GLN LEU SEQRES 5 C 131 PHE LEU ARG ALA THR THR GLU LEU ARG THR PHE SER ILE SEQRES 6 C 131 LEU ASN ARG LYS ALA ILE ASP PHE LEU LEU GLN ARG TRP SEQRES 7 C 131 GLY GLY THR CYS HIS ILE LEU GLY PRO ASP CYS ARG ILE SEQRES 8 C 131 GLU PRO HIS ASP TRP THR LYS ASN ILE THR ASP LYS ILE SEQRES 9 C 131 ASP GLN ILE ILE HIS ASP PHE VAL ASP LYS THR LEU PRO SEQRES 10 C 131 ASP GLN GLY ASP ASN ASP ASN TRP TRP THR GLY TRP ARG SEQRES 11 C 131 GLN SEQRES 1 D 131 MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE LEU SER SEQRES 2 D 131 LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG ILE LYS SEQRES 3 D 131 LYS LEU ILE GLY GLU ALA ASP GLY LEU ILE GLU GLY LEU SEQRES 4 D 131 ARG GLN LEU ALA ASN GLU THR THR GLN ALA LEU GLN LEU SEQRES 5 D 131 PHE LEU ARG ALA THR THR GLU LEU ARG THR PHE SER ILE SEQRES 6 D 131 LEU ASN ARG LYS ALA ILE ASP PHE LEU LEU GLN ARG TRP SEQRES 7 D 131 GLY GLY THR CYS HIS ILE LEU GLY PRO ASP CYS ARG ILE SEQRES 8 D 131 GLU PRO HIS ASP TRP THR LYS ASN ILE THR ASP LYS ILE SEQRES 9 D 131 ASP GLN ILE ILE HIS ASP PHE VAL ASP LYS THR LEU PRO SEQRES 10 D 131 ASP GLN GLY ASP ASN ASP ASN TRP TRP THR GLY TRP ARG SEQRES 11 D 131 GLN SEQRES 1 E 131 MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE LEU SER SEQRES 2 E 131 LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG ILE LYS SEQRES 3 E 131 LYS LEU ILE GLY GLU ALA ASP GLY LEU ILE GLU GLY LEU SEQRES 4 E 131 ARG GLN LEU ALA ASN GLU THR THR GLN ALA LEU GLN LEU SEQRES 5 E 131 PHE LEU ARG ALA THR THR GLU LEU ARG THR PHE SER ILE SEQRES 6 E 131 LEU ASN ARG LYS ALA ILE ASP PHE LEU LEU GLN ARG TRP SEQRES 7 E 131 GLY GLY THR CYS HIS ILE LEU GLY PRO ASP CYS ARG ILE SEQRES 8 E 131 GLU PRO HIS ASP TRP THR LYS ASN ILE THR ASP LYS ILE SEQRES 9 E 131 ASP GLN ILE ILE HIS ASP PHE VAL ASP LYS THR LEU PRO SEQRES 10 E 131 ASP GLN GLY ASP ASN ASP ASN TRP TRP THR GLY TRP ARG SEQRES 11 E 131 GLN SEQRES 1 F 131 MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE LEU SER SEQRES 2 F 131 LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG ILE LYS SEQRES 3 F 131 LYS LEU ILE GLY GLU ALA ASP GLY LEU ILE GLU GLY LEU SEQRES 4 F 131 ARG GLN LEU ALA ASN GLU THR THR GLN ALA LEU GLN LEU SEQRES 5 F 131 PHE LEU ARG ALA THR THR GLU LEU ARG THR PHE SER ILE SEQRES 6 F 131 LEU ASN ARG LYS ALA ILE ASP PHE LEU LEU GLN ARG TRP SEQRES 7 F 131 GLY GLY THR CYS HIS ILE LEU GLY PRO ASP CYS ARG ILE SEQRES 8 F 131 GLU PRO HIS ASP TRP THR LYS ASN ILE THR ASP LYS ILE SEQRES 9 F 131 ASP GLN ILE ILE HIS ASP PHE VAL ASP LYS THR LEU PRO SEQRES 10 F 131 ASP GLN GLY ASP ASN ASP ASN TRP TRP THR GLY TRP ARG SEQRES 11 F 131 GLN HET ZN A 150 1 HET CL B 150 1 HET ZN D 150 1 HET CL D 151 1 HET ZN F 150 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 7 ZN 3(ZN 2+) FORMUL 8 CL 2(CL 1-) HELIX 1 1 ILE A 4 ALA A 32 1 29 HELIX 2 2 LEU A 53 LEU A 92 1 40 HELIX 3 3 GLN A 94 TRP A 96 5 3 HELIX 4 4 THR A 99 ARG A 108 1 10 HELIX 5 5 THR A 115 PHE A 129 1 15 HELIX 6 6 ILE B 4 GLY B 30 1 27 HELIX 7 7 GLU B 55 LEU B 92 1 38 HELIX 8 8 GLN B 94 TRP B 96 5 3 HELIX 9 9 THR B 99 LEU B 103 1 5 HELIX 10 10 PRO B 105 ARG B 108 5 4 HELIX 11 11 THR B 115 PHE B 129 1 15 HELIX 12 12 ILE C 4 TRP C 96 1 75 HELIX 13 13 THR C 99 ILE C 102 1 4 HELIX 14 14 PRO C 105 ARG C 108 5 4 HELIX 15 15 THR C 115 PHE C 129 1 15 HELIX 16 16 ILE D 4 TRP D 96 1 75 HELIX 17 17 THR D 99 LEU D 103 1 5 HELIX 18 18 PRO D 105 ARG D 108 5 4 HELIX 19 19 THR D 115 PHE D 129 1 15 HELIX 20 20 ILE E 4 TRP E 96 1 75 HELIX 21 21 THR E 99 LEU E 103 1 5 HELIX 22 22 PRO E 105 ARG E 108 5 4 HELIX 23 23 THR E 115 PHE E 129 1 15 HELIX 24 24 ILE F 4 ALA F 32 1 29 HELIX 25 25 LEU F 53 TRP F 96 1 44 HELIX 26 26 THR F 99 LEU F 103 1 5 HELIX 27 27 PRO F 105 ARG F 108 5 4 HELIX 28 28 THR F 115 PHE F 129 1 15 SSBOND 1 CYS A 100 CYS A 107 1555 1555 2.03 SSBOND 2 CYS B 100 CYS B 107 1555 1555 2.04 SSBOND 3 CYS C 100 CYS C 107 1555 1555 2.03 SSBOND 4 CYS D 100 CYS D 107 1555 1555 2.02 SSBOND 5 CYS E 100 CYS E 107 1555 1555 2.04 SSBOND 6 CYS F 100 CYS F 107 1555 1555 2.03 LINK NE2 HIS B 112 ZN ZN D 150 3556 1555 2.46 LINK NE2 HIS D 127 ZN ZN D 150 1555 1555 2.34 SITE 1 AC1 2 HIS B 112 HIS D 127 SITE 1 AC2 2 HIS C 112 GLN F 3 SITE 1 AC3 2 GLN A 3 HIS E 112 SITE 1 AC4 3 SER D 82 ASN D 85 SER F 82 SITE 1 AC5 4 ASN A 85 SER B 82 ASN B 85 SER C 82 CRYST1 171.702 32.691 168.863 90.00 119.23 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005824 0.000000 0.003259 0.00000 SCALE2 0.000000 0.030589 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006786 0.00000