PDB Short entry for 1ED9 HEADER HYDROLASE 27-JAN-00 1ED9 TITLE STRUCTURE OF E. COLI ALKALINE PHOSPHATASE WITHOUT THE TITLE 2 INORGANIC PHOSPHATE AT 1.75A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PEK48 KEYWDS WILD TYPE, FREE OF PHOSPHATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.STEC,K.M.HOLTZ,E.R.KANTROWITZ REVDAT 2 24-FEB-09 1ED9 1 VERSN REVDAT 1 20-SEP-00 1ED9 0 JRNL AUTH B.STEC,K.M.HOLTZ,E.R.KANTROWITZ JRNL TITL A REVISED MECHANISM FOR THE ALKALINE PHOSPHATASE JRNL TITL 2 REACTION INVOLVING THREE METAL IONS. JRNL REF J.MOL.BIOL. V. 299 1303 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10873454 JRNL DOI 10.1006/JMBI.2000.3799 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.E.KIM,H.W.WYCKOFF REMARK 1 TITL REACTION MECHANISM OF ALKALINE PHOSPHATASE BASED REMARK 1 TITL 2 ON CRYSTAL STRUCTURES. TWO-METAL ION CATALYSIS. REMARK 1 REF J.MOL.BIOL. V. 218 449 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : EVERY 25 REFLECTION REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.197 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.196 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 4635 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 116126 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.166 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.165 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 2908 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 68875 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 616 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 7234.78 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 6386.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 29907 REMARK 3 NUMBER OF RESTRAINTS : 28661 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 ANGLE DISTANCES (A) : 0.034 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.261 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.127 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.103 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CONJUGATE GRADIENT REFINEMENT. REMARK 3 LAST CYCLE WITH FULL MATRIX. REMARK 4 REMARK 4 1ED9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-00. REMARK 100 THE RCSB ID CODE IS RCSB010468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-97 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : UCSD MARK II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SDMS REMARK 200 DATA SCALING SOFTWARE : SDMS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116126 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 3.450 REMARK 200 R MERGE (I) : 0.06370 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.76 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, AMMONIUM SULFATE, REMARK 280 MAGNESIUM CHLORIDE, ZINC CHLORIDE, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 97.23500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 83.65000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.27550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 97.23500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 83.65000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.27550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 97.23500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 83.65000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.27550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 97.23500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 83.65000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.27550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -168.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1258 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1442 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1514 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 739 OG SER B 742 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 62 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASN A 293 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 MET B 504 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 TYR B 584 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 732 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR B 940 CB - CG - CD2 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR B 940 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 111.43 -163.95 REMARK 500 ALA A 88 -167.25 -101.62 REMARK 500 ASN A 293 146.74 79.06 REMARK 500 PRO B 502 82.86 -69.77 REMARK 500 ALA B 588 -164.65 -104.19 REMARK 500 ASN B 793 141.44 66.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 226 0.16 SIDE_CHAIN REMARK 500 ARG B 726 0.08 SIDE_CHAIN REMARK 500 ARG B 767 0.10 SIDE_CHAIN REMARK 500 ARG B 792 0.29 SIDE_CHAIN REMARK 500 ARG B 851 0.25 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1352 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A1442 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH A1475 DISTANCE = 5.22 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 450 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 327 OD1 REMARK 620 2 ASP A 327 OD2 56.0 REMARK 620 3 HIS A 412 NE2 94.0 150.0 REMARK 620 4 HOH A1001 O 111.9 93.1 101.2 REMARK 620 5 HIS A 331 NE2 114.7 91.9 100.4 126.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 451 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 369 OD1 REMARK 620 2 ASP A 51 OD1 105.7 REMARK 620 3 SER A 102 OG 112.1 122.1 REMARK 620 4 HIS A 370 NE2 93.3 110.3 109.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 462 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 455 O REMARK 620 2 HOH A 454 O 93.7 REMARK 620 3 THR A 155 OG1 174.9 91.3 REMARK 620 4 ASP A 51 OD2 89.0 170.1 85.9 REMARK 620 5 GLU A 322 OE2 92.4 90.9 88.6 98.5 REMARK 620 6 HOH A 453 O 90.5 82.3 89.0 88.2 172.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 950 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1004 O REMARK 620 2 HIS B 912 NE2 102.7 REMARK 620 3 HIS B 831 NE2 127.3 110.2 REMARK 620 4 ASP B 827 OD2 87.3 149.7 84.3 REMARK 620 5 ASP B 827 OD1 111.2 96.1 105.0 53.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 951 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 870 NE2 REMARK 620 2 ASP B 869 OD1 92.0 REMARK 620 3 ASP B 551 OD1 113.9 100.8 REMARK 620 4 SER B 602 OG 115.0 109.8 120.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 962 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 953 O REMARK 620 2 HOH B 954 O 82.8 REMARK 620 3 GLU B 822 OE1 173.3 93.1 REMARK 620 4 ASP B 551 OD2 92.8 174.0 91.8 REMARK 620 5 HOH B 955 O 86.7 96.7 88.6 87.1 REMARK 620 6 THR B 655 OG1 93.1 90.5 92.2 85.7 172.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 450 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 451 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 462 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 458 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 950 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 951 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 962 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 958 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ED8 RELATED DB: PDB REMARK 900 STRUCTURE OF E. COLI ALKALINE PHOSPHATASE INHIBITED BY THE REMARK 900 INORGANIC PHOSPHATE AT 1.75A RESOLUTION REMARK 900 RELATED ID: 1ALK RELATED DB: PDB REMARK 900 STRUCTURE OF E. COLI ALKALINE PHOSPHATASE INHIBITED BY THE REMARK 900 INORGANIC PHOSPHATE AT 2.0A RESOLUTION DBREF 1ED9 A 1 449 UNP P00634 PPB_ECOLI 23 471 DBREF 1ED9 B 501 949 UNP P00634 PPB_ECOLI 23 471 SEQRES 1 A 449 THR PRO GLU MET PRO VAL LEU GLU ASN ARG ALA ALA GLN SEQRES 2 A 449 GLY ASP ILE THR ALA PRO GLY GLY ALA ARG ARG LEU THR SEQRES 3 A 449 GLY ASP GLN THR ALA ALA LEU ARG ASP SER LEU SER ASP SEQRES 4 A 449 LYS PRO ALA LYS ASN ILE ILE LEU LEU ILE GLY ASP GLY SEQRES 5 A 449 MET GLY ASP SER GLU ILE THR ALA ALA ARG ASN TYR ALA SEQRES 6 A 449 GLU GLY ALA GLY GLY PHE PHE LYS GLY ILE ASP ALA LEU SEQRES 7 A 449 PRO LEU THR GLY GLN TYR THR HIS TYR ALA LEU ASN LYS SEQRES 8 A 449 LYS THR GLY LYS PRO ASP TYR VAL THR ASP SER ALA ALA SEQRES 9 A 449 SER ALA THR ALA TRP SER THR GLY VAL LYS THR TYR ASN SEQRES 10 A 449 GLY ALA LEU GLY VAL ASP ILE HIS GLU LYS ASP HIS PRO SEQRES 11 A 449 THR ILE LEU GLU MET ALA LYS ALA ALA GLY LEU ALA THR SEQRES 12 A 449 GLY ASN VAL SER THR ALA GLU LEU GLN ASP ALA THR PRO SEQRES 13 A 449 ALA ALA LEU VAL ALA HIS VAL THR SER ARG LYS CYS TYR SEQRES 14 A 449 GLY PRO SER ALA THR SER GLU LYS CYS PRO GLY ASN ALA SEQRES 15 A 449 LEU GLU LYS GLY GLY LYS GLY SER ILE THR GLU GLN LEU SEQRES 16 A 449 LEU ASN ALA ARG ALA ASP VAL THR LEU GLY GLY GLY ALA SEQRES 17 A 449 LYS THR PHE ALA GLU THR ALA THR ALA GLY GLU TRP GLN SEQRES 18 A 449 GLY LYS THR LEU ARG GLU GLN ALA GLN ALA ARG GLY TYR SEQRES 19 A 449 GLN LEU VAL SER ASP ALA ALA SER LEU ASN SER VAL THR SEQRES 20 A 449 GLU ALA ASN GLN GLN LYS PRO LEU LEU GLY LEU PHE ALA SEQRES 21 A 449 ASP GLY ASN MET PRO VAL ARG TRP LEU GLY PRO LYS ALA SEQRES 22 A 449 THR TYR HIS GLY ASN ILE ASP LYS PRO ALA VAL THR CYS SEQRES 23 A 449 THR PRO ASN PRO GLN ARG ASN ASP SER VAL PRO THR LEU SEQRES 24 A 449 ALA GLN MET THR ASP LYS ALA ILE GLU LEU LEU SER LYS SEQRES 25 A 449 ASN GLU LYS GLY PHE PHE LEU GLN VAL GLU GLY ALA SER SEQRES 26 A 449 ILE ASP LYS GLN ASP HIS ALA ALA ASN PRO CYS GLY GLN SEQRES 27 A 449 ILE GLY GLU THR VAL ASP LEU ASP GLU ALA VAL GLN ARG SEQRES 28 A 449 ALA LEU GLU PHE ALA LYS LYS GLU GLY ASN THR LEU VAL SEQRES 29 A 449 ILE VAL THR ALA ASP HIS ALA HIS ALA SER GLN ILE VAL SEQRES 30 A 449 ALA PRO ASP THR LYS ALA PRO GLY LEU THR GLN ALA LEU SEQRES 31 A 449 ASN THR LYS ASP GLY ALA VAL MET VAL MET SER TYR GLY SEQRES 32 A 449 ASN SER GLU GLU ASP SER GLN GLU HIS THR GLY SER GLN SEQRES 33 A 449 LEU ARG ILE ALA ALA TYR GLY PRO HIS ALA ALA ASN VAL SEQRES 34 A 449 VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR THR MET SEQRES 35 A 449 LYS ALA ALA LEU GLY LEU LYS SEQRES 1 B 449 THR PRO GLU MET PRO VAL LEU GLU ASN ARG ALA ALA GLN SEQRES 2 B 449 GLY ASP ILE THR ALA PRO GLY GLY ALA ARG ARG LEU THR SEQRES 3 B 449 GLY ASP GLN THR ALA ALA LEU ARG ASP SER LEU SER ASP SEQRES 4 B 449 LYS PRO ALA LYS ASN ILE ILE LEU LEU ILE GLY ASP GLY SEQRES 5 B 449 MET GLY ASP SER GLU ILE THR ALA ALA ARG ASN TYR ALA SEQRES 6 B 449 GLU GLY ALA GLY GLY PHE PHE LYS GLY ILE ASP ALA LEU SEQRES 7 B 449 PRO LEU THR GLY GLN TYR THR HIS TYR ALA LEU ASN LYS SEQRES 8 B 449 LYS THR GLY LYS PRO ASP TYR VAL THR ASP SER ALA ALA SEQRES 9 B 449 SER ALA THR ALA TRP SER THR GLY VAL LYS THR TYR ASN SEQRES 10 B 449 GLY ALA LEU GLY VAL ASP ILE HIS GLU LYS ASP HIS PRO SEQRES 11 B 449 THR ILE LEU GLU MET ALA LYS ALA ALA GLY LEU ALA THR SEQRES 12 B 449 GLY ASN VAL SER THR ALA GLU LEU GLN ASP ALA THR PRO SEQRES 13 B 449 ALA ALA LEU VAL ALA HIS VAL THR SER ARG LYS CYS TYR SEQRES 14 B 449 GLY PRO SER ALA THR SER GLU LYS CYS PRO GLY ASN ALA SEQRES 15 B 449 LEU GLU LYS GLY GLY LYS GLY SER ILE THR GLU GLN LEU SEQRES 16 B 449 LEU ASN ALA ARG ALA ASP VAL THR LEU GLY GLY GLY ALA SEQRES 17 B 449 LYS THR PHE ALA GLU THR ALA THR ALA GLY GLU TRP GLN SEQRES 18 B 449 GLY LYS THR LEU ARG GLU GLN ALA GLN ALA ARG GLY TYR SEQRES 19 B 449 GLN LEU VAL SER ASP ALA ALA SER LEU ASN SER VAL THR SEQRES 20 B 449 GLU ALA ASN GLN GLN LYS PRO LEU LEU GLY LEU PHE ALA SEQRES 21 B 449 ASP GLY ASN MET PRO VAL ARG TRP LEU GLY PRO LYS ALA SEQRES 22 B 449 THR TYR HIS GLY ASN ILE ASP LYS PRO ALA VAL THR CYS SEQRES 23 B 449 THR PRO ASN PRO GLN ARG ASN ASP SER VAL PRO THR LEU SEQRES 24 B 449 ALA GLN MET THR ASP LYS ALA ILE GLU LEU LEU SER LYS SEQRES 25 B 449 ASN GLU LYS GLY PHE PHE LEU GLN VAL GLU GLY ALA SER SEQRES 26 B 449 ILE ASP LYS GLN ASP HIS ALA ALA ASN PRO CYS GLY GLN SEQRES 27 B 449 ILE GLY GLU THR VAL ASP LEU ASP GLU ALA VAL GLN ARG SEQRES 28 B 449 ALA LEU GLU PHE ALA LYS LYS GLU GLY ASN THR LEU VAL SEQRES 29 B 449 ILE VAL THR ALA ASP HIS ALA HIS ALA SER GLN ILE VAL SEQRES 30 B 449 ALA PRO ASP THR LYS ALA PRO GLY LEU THR GLN ALA LEU SEQRES 31 B 449 ASN THR LYS ASP GLY ALA VAL MET VAL MET SER TYR GLY SEQRES 32 B 449 ASN SER GLU GLU ASP SER GLN GLU HIS THR GLY SER GLN SEQRES 33 B 449 LEU ARG ILE ALA ALA TYR GLY PRO HIS ALA ALA ASN VAL SEQRES 34 B 449 VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR THR MET SEQRES 35 B 449 LYS ALA ALA LEU GLY LEU LYS HET ZN A 450 1 HET ZN A 451 1 HET MG A 462 1 HET SO4 A 458 5 HET ZN B 950 1 HET ZN B 951 1 HET MG B 962 1 HET SO4 B 958 5 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 3 ZN 4(ZN 2+) FORMUL 5 MG 2(MG 2+) FORMUL 6 SO4 2(O4 S 2-) FORMUL 11 HOH *616(H2 O) HELIX 1 1 GLN A 29 ASP A 35 1 7 HELIX 2 2 GLY A 54 GLU A 66 1 13 HELIX 3 3 ASP A 101 GLY A 112 1 12 HELIX 4 4 THR A 131 ALA A 139 1 9 HELIX 5 5 ASP A 153 ALA A 158 1 6 HELIX 6 6 GLY A 170 CYS A 178 1 9 HELIX 7 7 ALA A 182 GLY A 186 5 5 HELIX 8 8 SER A 190 ARG A 199 1 10 HELIX 9 9 GLY A 207 GLU A 213 5 7 HELIX 10 10 THR A 224 ARG A 232 1 9 HELIX 11 11 ASP A 239 VAL A 246 1 8 HELIX 12 12 HIS A 276 LYS A 281 1 6 HELIX 13 13 PRO A 290 ASN A 293 5 4 HELIX 14 14 THR A 298 SER A 311 1 14 HELIX 15 15 ALA A 324 ALA A 332 1 9 HELIX 16 16 ASN A 334 GLY A 360 1 27 HELIX 17 17 HIS A 425 VAL A 430 5 6 HELIX 18 18 GLN A 435 GLY A 447 1 13 HELIX 19 19 GLN B 529 ASP B 535 1 7 HELIX 20 20 GLY B 554 GLU B 566 1 13 HELIX 21 21 GLY B 574 LEU B 578 5 5 HELIX 22 22 ASP B 601 GLY B 612 1 12 HELIX 23 23 THR B 631 ALA B 639 1 9 HELIX 24 24 ASP B 653 ALA B 658 1 6 HELIX 25 25 GLY B 670 CYS B 678 1 9 HELIX 26 26 PRO B 679 ALA B 682 5 4 HELIX 27 27 SER B 690 ARG B 699 1 10 HELIX 28 28 ALA B 708 GLU B 713 5 6 HELIX 29 29 THR B 724 ARG B 732 1 9 HELIX 30 30 ASP B 739 VAL B 746 1 8 HELIX 31 31 HIS B 776 LYS B 781 1 6 HELIX 32 32 THR B 798 SER B 811 1 14 HELIX 33 33 ALA B 824 ALA B 832 1 9 HELIX 34 34 ASN B 834 GLY B 860 1 27 HELIX 35 35 HIS B 925 VAL B 930 5 6 HELIX 36 36 GLN B 935 GLY B 947 1 13 SHEET 1 A10 GLN A 235 VAL A 237 0 SHEET 2 A10 LEU A 255 LEU A 258 1 N LEU A 256 O GLN A 235 SHEET 3 A10 VAL A 202 GLY A 206 1 O THR A 203 N GLY A 257 SHEET 4 A10 ALA A 142 GLU A 150 1 O THR A 143 N VAL A 202 SHEET 5 A10 PHE A 317 GLY A 323 1 O PHE A 318 N GLY A 144 SHEET 6 A10 ASN A 44 GLY A 50 1 O ILE A 45 N LEU A 319 SHEET 7 A10 THR A 362 ALA A 368 1 N LEU A 363 O ASN A 44 SHEET 8 A10 LEU A 417 TYR A 422 -1 O ALA A 420 N VAL A 366 SHEET 9 A10 LEU A 80 THR A 85 -1 O LEU A 80 N ALA A 421 SHEET 10 A10 GLY A 431 ASP A 434 1 O GLY A 431 N GLN A 83 SHEET 1 B 2 ALA A 88 LEU A 89 0 SHEET 2 B 2 PRO A 96 ASP A 97 -1 N ASP A 97 O ALA A 88 SHEET 1 C 2 TRP A 268 LEU A 269 0 SHEET 2 C 2 THR A 287 PRO A 288 -1 O THR A 287 N LEU A 269 SHEET 1 D 4 THR A 274 TYR A 275 0 SHEET 2 D 4 LEU A 386 ASN A 391 -1 N THR A 387 O THR A 274 SHEET 3 D 4 VAL A 397 TYR A 402 -1 O MET A 398 N LEU A 390 SHEET 4 D 4 GLN A 375 VAL A 377 -1 O GLN A 375 N SER A 401 SHEET 1 E10 GLN B 735 VAL B 737 0 SHEET 2 E10 LEU B 755 LEU B 758 1 N LEU B 756 O GLN B 735 SHEET 3 E10 VAL B 702 GLY B 706 1 O THR B 703 N GLY B 757 SHEET 4 E10 ALA B 642 GLU B 650 1 O THR B 643 N VAL B 702 SHEET 5 E10 PHE B 817 GLY B 823 1 N PHE B 818 O ALA B 642 SHEET 6 E10 ASN B 544 GLY B 550 1 O ILE B 545 N LEU B 819 SHEET 7 E10 THR B 862 ALA B 868 1 N LEU B 863 O ASN B 544 SHEET 8 E10 LEU B 917 TYR B 922 -1 O ARG B 918 N ALA B 868 SHEET 9 E10 LEU B 580 THR B 585 -1 O LEU B 580 N ALA B 921 SHEET 10 E10 GLY B 931 ASP B 934 1 O GLY B 931 N GLN B 583 SHEET 1 F 2 ALA B 588 LEU B 589 0 SHEET 2 F 2 PRO B 596 ASP B 597 -1 O ASP B 597 N ALA B 588 SHEET 1 G 2 TRP B 768 LEU B 769 0 SHEET 2 G 2 THR B 787 PRO B 788 -1 O THR B 787 N LEU B 769 SHEET 1 H 3 GLN B 875 VAL B 877 0 SHEET 2 H 3 VAL B 897 TYR B 902 -1 O VAL B 899 N VAL B 877 SHEET 3 H 3 LEU B 886 ASN B 891 -1 N LEU B 886 O TYR B 902 SSBOND 1 CYS A 168 CYS A 178 1555 1555 1.99 SSBOND 2 CYS A 286 CYS A 336 1555 1555 2.03 SSBOND 3 CYS B 668 CYS B 678 1555 1555 2.02 SSBOND 4 CYS B 786 CYS B 836 1555 1555 2.03 LINK ZN ZN A 450 OD1 ASP A 327 1555 1555 2.19 LINK ZN ZN A 450 OD2 ASP A 327 1555 1555 2.47 LINK ZN ZN A 450 NE2 HIS A 412 1555 1555 1.99 LINK ZN ZN A 450 O HOH A1001 1555 1555 2.23 LINK ZN ZN A 450 NE2 HIS A 331 1555 1555 2.18 LINK ZN ZN A 451 OD1 ASP A 369 1555 1555 1.97 LINK ZN ZN A 451 OD1 ASP A 51 1555 1555 2.10 LINK ZN ZN A 451 OG SER A 102 1555 1555 1.90 LINK ZN ZN A 451 NE2 HIS A 370 1555 1555 2.11 LINK MG MG A 462 O HOH A 455 1555 1555 2.14 LINK MG MG A 462 O HOH A 454 1555 1555 2.04 LINK MG MG A 462 OG1 THR A 155 1555 1555 2.27 LINK MG MG A 462 OD2 ASP A 51 1555 1555 2.14 LINK MG MG A 462 OE2 GLU A 322 1555 1555 1.91 LINK MG MG A 462 O HOH A 453 1555 1555 2.11 LINK ZN ZN B 950 O HOH B1004 1555 1555 2.30 LINK ZN ZN B 950 NE2 HIS B 912 1555 1555 1.97 LINK ZN ZN B 950 NE2 HIS B 831 1555 1555 1.98 LINK ZN ZN B 950 OD2 ASP B 827 1555 1555 2.60 LINK ZN ZN B 950 OD1 ASP B 827 1555 1555 2.21 LINK ZN ZN B 951 NE2 HIS B 870 1555 1555 2.06 LINK ZN ZN B 951 OD1 ASP B 869 1555 1555 2.14 LINK ZN ZN B 951 OD1 ASP B 551 1555 1555 1.96 LINK ZN ZN B 951 OG SER B 602 1555 1555 1.93 LINK MG MG B 962 O HOH B 953 1555 1555 2.07 LINK MG MG B 962 O HOH B 954 1555 1555 1.99 LINK MG MG B 962 OE1 GLU B 822 1555 1555 1.93 LINK MG MG B 962 OD2 ASP B 551 1555 1555 1.99 LINK MG MG B 962 O HOH B 955 1555 1555 2.13 LINK MG MG B 962 OG1 THR B 655 1555 1555 2.27 SITE 1 AC1 4 ASP A 327 HIS A 331 HIS A 412 HOH A1001 SITE 1 AC2 5 ASP A 51 SER A 102 ASP A 327 ASP A 369 SITE 2 AC2 5 HIS A 370 SITE 1 AC3 6 ASP A 51 THR A 155 GLU A 322 HOH A 453 SITE 2 AC3 6 HOH A 454 HOH A 455 SITE 1 AC4 4 ARG A 267 TRP A 268 ARG A 292 LYS B 949 SITE 1 AC5 4 ASP B 827 HIS B 831 HIS B 912 HOH B1004 SITE 1 AC6 5 ASP B 551 SER B 602 ASP B 827 ASP B 869 SITE 2 AC6 5 HIS B 870 SITE 1 AC7 6 ASP B 551 THR B 655 GLU B 822 HOH B 953 SITE 2 AC7 6 HOH B 954 HOH B 955 SITE 1 AC8 3 ARG B 767 TRP B 768 ARG B 792 CRYST1 194.470 167.300 76.551 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005142 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013063 0.00000