PDB Short entry for 1EFN HEADER COMPLEX (SH3 DOMAIN/VIRAL ENHANCER) 29-JUN-96 1EFN TITLE HIV-1 NEF PROTEIN IN COMPLEX WITH R96I MUTANT FYN SH3 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FYN TYROSINE KINASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: SH3 DOMAIN, RESIDUES 85-141; COMPND 5 SYNONYM: SRC-HOMOLOGY 3 DOMAIN; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HIV-1 NEF PROTEIN; COMPND 11 CHAIN: B, D; COMPND 12 FRAGMENT: CONSERVED CORE DOMAIN OF NEF, RESIDUES 71-203; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIV-1 NEF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 10 EXPRESSION_SYSTEM_GENE: FYN TYROSINE KINASE; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 13 ORGANISM_TAXID: 11676; SOURCE 14 STRAIN: NL4-3; SOURCE 15 GENE: HIV-1 NEF; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: K12 PR745; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PGEX-2T(TEV); SOURCE 20 EXPRESSION_SYSTEM_GENE: SYSTEM_GENE: HIV-1 NEF KEYWDS COMPLEX (SH3 DOMAIN-VIRAL ENHANCER), PROTO-ONCOGENE, TRANSFERASE, KEYWDS 2 TYROSINE-PROTEIN KINASE, PHOSPHORYLATION, AIDS, MYRISTYLATION, GTP- KEYWDS 3 BINDING, ATP-BINDING, SH3 DOMAIN, SH2 DOMAIN, PPII HELIX, PXXP KEYWDS 4 MOTIF, COMPLEX (SH3 DOMAIN-VIRAL ENHANCER) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.-H.LEE,J.KURIYAN REVDAT 4 07-FEB-24 1EFN 1 REMARK REVDAT 3 03-NOV-21 1EFN 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1EFN 1 VERSN REVDAT 1 11-JAN-97 1EFN 0 JRNL AUTH C.H.LEE,K.SAKSELA,U.A.MIRZA,B.T.CHAIT,J.KURIYAN JRNL TITL CRYSTAL STRUCTURE OF THE CONSERVED CORE OF HIV-1 NEF JRNL TITL 2 COMPLEXED WITH A SRC FAMILY SH3 DOMAIN. JRNL REF CELL(CAMBRIDGE,MASS.) V. 85 931 1996 JRNL REFN ISSN 0092-8674 JRNL PMID 8681387 JRNL DOI 10.1016/S0092-8674(00)81276-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GRZESIEK,A.BAX,G.M.CLORE,A.M.GRONENBORN,J.S.HU,J.KAUFMAN, REMARK 1 AUTH 2 I.PALMER,S.J.STAHL,P.T.WINGFIELD REMARK 1 TITL THE SOLUTION STRUCTURE OF HIV-1 NEF REVEALS AN UNEXPECTED REMARK 1 TITL 2 FOLD AND PERMITS DELINEATION OF THE BINDING SURFACE FOR THE REMARK 1 TITL 3 SH3 DOMAIN OF HCK TYROSINE PROTEIN KINASE REMARK 1 REF NAT.STRUCT.BIOL. V. 3 340 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.H.LEE,B.LEUNG,M.A.LEMMON,J.ZHENG,D.COWBURN,J.KURIYAN, REMARK 1 AUTH 2 K.SAKSELA REMARK 1 TITL A SINGLE AMINO ACID IN THE SH3 DOMAIN OF HCK DETERMINES ITS REMARK 1 TITL 2 HIGH AFFINITY AND SPECIFICITY IN BINDING TO HIV-1 NEF REMARK 1 TITL 3 PROTEIN REMARK 1 REF EMBO J. V. 14 5006 1995 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 80.1 REMARK 3 NUMBER OF REFLECTIONS : 20684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2635 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EFN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173035. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JAN-96 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26464 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 152.73333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.36667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.55000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.18333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 190.91667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 152.73333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 76.36667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.18333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 114.55000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 190.91667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 142 REMARK 465 SER A 143 REMARK 465 ALA B 54 REMARK 465 CYS B 55 REMARK 465 ALA B 56 REMARK 465 TRP B 57 REMARK 465 LEU B 58 REMARK 465 GLU B 59 REMARK 465 ALA B 60 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 GLU B 63 REMARK 465 GLU B 64 REMARK 465 GLU B 65 REMARK 465 VAL B 66 REMARK 465 GLY B 67 REMARK 465 PHE B 68 REMARK 465 PRO B 69 REMARK 465 VAL B 70 REMARK 465 GLU B 149 REMARK 465 PRO B 150 REMARK 465 ASP B 151 REMARK 465 LYS B 152 REMARK 465 VAL B 153 REMARK 465 GLU B 154 REMARK 465 GLU B 155 REMARK 465 ALA B 156 REMARK 465 ASN B 157 REMARK 465 LYS B 158 REMARK 465 GLY B 159 REMARK 465 GLU B 160 REMARK 465 ASN B 161 REMARK 465 THR B 162 REMARK 465 SER B 163 REMARK 465 LEU B 164 REMARK 465 LEU B 165 REMARK 465 HIS B 166 REMARK 465 PRO B 167 REMARK 465 VAL B 168 REMARK 465 SER B 169 REMARK 465 LEU B 170 REMARK 465 HIS B 171 REMARK 465 GLY B 172 REMARK 465 MET B 173 REMARK 465 ASP B 174 REMARK 465 ASP B 175 REMARK 465 PRO B 176 REMARK 465 GLU B 177 REMARK 465 LYS B 204 REMARK 465 ASN B 205 REMARK 465 ASP C 142 REMARK 465 SER C 143 REMARK 465 ALA D 54 REMARK 465 CYS D 55 REMARK 465 ALA D 56 REMARK 465 TRP D 57 REMARK 465 LEU D 58 REMARK 465 GLU D 59 REMARK 465 ALA D 60 REMARK 465 GLN D 61 REMARK 465 GLU D 62 REMARK 465 GLU D 63 REMARK 465 GLU D 64 REMARK 465 GLU D 65 REMARK 465 VAL D 66 REMARK 465 GLY D 67 REMARK 465 PHE D 68 REMARK 465 PRO D 69 REMARK 465 VAL D 70 REMARK 465 GLU D 149 REMARK 465 PRO D 150 REMARK 465 ASP D 151 REMARK 465 LYS D 152 REMARK 465 VAL D 153 REMARK 465 GLU D 154 REMARK 465 GLU D 155 REMARK 465 ALA D 156 REMARK 465 ASN D 157 REMARK 465 LYS D 158 REMARK 465 GLY D 159 REMARK 465 GLU D 160 REMARK 465 ASN D 161 REMARK 465 THR D 162 REMARK 465 SER D 163 REMARK 465 LEU D 164 REMARK 465 LEU D 165 REMARK 465 HIS D 166 REMARK 465 PRO D 167 REMARK 465 VAL D 168 REMARK 465 SER D 169 REMARK 465 LEU D 170 REMARK 465 HIS D 171 REMARK 465 GLY D 172 REMARK 465 MET D 173 REMARK 465 ASP D 174 REMARK 465 ASP D 175 REMARK 465 PRO D 176 REMARK 465 GLU D 177 REMARK 465 LYS D 204 REMARK 465 ASN D 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 86 CG CD1 CD2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LEU A 112 CG CD1 CD2 REMARK 470 SER A 115 OG REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 ARG A 123 CZ NH1 NH2 REMARK 470 LEU A 125 CG CD1 CD2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 ARG B 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 82 CG CD CE NZ REMARK 470 LYS D 94 CG CD CE NZ REMARK 470 VAL D 148 CG1 CG2 REMARK 470 ARG D 178 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 103 -177.36 -174.05 REMARK 500 ASN A 113 137.34 177.87 REMARK 500 SER A 114 10.86 -144.31 REMARK 500 THR A 127 -29.21 -152.14 REMARK 500 PRO B 72 158.89 -48.46 REMARK 500 VAL B 74 153.64 -48.51 REMARK 500 PRO B 122 74.50 -64.73 REMARK 500 ASP B 123 16.67 -152.17 REMARK 500 CYS B 142 41.76 -91.08 REMARK 500 SER B 187 -36.06 -33.13 REMARK 500 PRO D 122 51.04 -65.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PBM B 710 PB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 192 NE2 REMARK 620 2 PBM B 710 C1 74.1 REMARK 620 3 PBM B 710 C2 111.5 119.9 REMARK 620 4 PBM B 710 C3 84.5 119.8 120.2 REMARK 620 5 ASP D 86 OD1 159.0 101.6 88.7 79.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PBM B 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PBM D 720 DBREF 1EFN A 86 143 UNP P06241 FYN_HUMAN 85 142 DBREF 1EFN B 54 205 UNP P03406 NEF_HV1BR 54 205 DBREF 1EFN C 86 143 UNP P06241 FYN_HUMAN 85 142 DBREF 1EFN D 54 205 UNP P03406 NEF_HV1BR 54 205 SEQADV 1EFN ILE A 96 UNP P06241 ARG 95 ENGINEERED MUTATION SEQADV 1EFN ARG B 71 UNP P03406 THR 71 ENGINEERED MUTATION SEQADV 1EFN ILE C 96 UNP P06241 ARG 95 ENGINEERED MUTATION SEQADV 1EFN ARG D 71 UNP P03406 THR 71 ENGINEERED MUTATION SEQRES 1 A 59 ALA LEU PHE VAL ALA LEU TYR ASP TYR GLU ALA ILE THR SEQRES 2 A 59 GLU ASP ASP LEU SER PHE HIS LYS GLY GLU LYS PHE GLN SEQRES 3 A 59 ILE LEU ASN SER SER GLU GLY ASP TRP TRP GLU ALA ARG SEQRES 4 A 59 SER LEU THR THR GLY GLU THR GLY TYR ILE PRO SER ASN SEQRES 5 A 59 TYR VAL ALA PRO VAL ASP SER SEQRES 1 B 152 ALA CYS ALA TRP LEU GLU ALA GLN GLU GLU GLU GLU VAL SEQRES 2 B 152 GLY PHE PRO VAL ARG PRO GLN VAL PRO LEU ARG PRO MET SEQRES 3 B 152 THR TYR LYS ALA ALA VAL ASP LEU SER HIS PHE LEU LYS SEQRES 4 B 152 GLU LYS GLY GLY LEU GLU GLY LEU ILE HIS SER GLN ARG SEQRES 5 B 152 ARG GLN ASP ILE LEU ASP LEU TRP ILE TYR HIS THR GLN SEQRES 6 B 152 GLY TYR PHE PRO ASP TRP GLN ASN TYR THR PRO GLY PRO SEQRES 7 B 152 GLY VAL ARG TYR PRO LEU THR PHE GLY TRP CYS TYR LYS SEQRES 8 B 152 LEU VAL PRO VAL GLU PRO ASP LYS VAL GLU GLU ALA ASN SEQRES 9 B 152 LYS GLY GLU ASN THR SER LEU LEU HIS PRO VAL SER LEU SEQRES 10 B 152 HIS GLY MET ASP ASP PRO GLU ARG GLU VAL LEU GLU TRP SEQRES 11 B 152 ARG PHE ASP SER ARG LEU ALA PHE HIS HIS VAL ALA ARG SEQRES 12 B 152 GLU LEU HIS PRO GLU TYR PHE LYS ASN SEQRES 1 C 59 ALA LEU PHE VAL ALA LEU TYR ASP TYR GLU ALA ILE THR SEQRES 2 C 59 GLU ASP ASP LEU SER PHE HIS LYS GLY GLU LYS PHE GLN SEQRES 3 C 59 ILE LEU ASN SER SER GLU GLY ASP TRP TRP GLU ALA ARG SEQRES 4 C 59 SER LEU THR THR GLY GLU THR GLY TYR ILE PRO SER ASN SEQRES 5 C 59 TYR VAL ALA PRO VAL ASP SER SEQRES 1 D 152 ALA CYS ALA TRP LEU GLU ALA GLN GLU GLU GLU GLU VAL SEQRES 2 D 152 GLY PHE PRO VAL ARG PRO GLN VAL PRO LEU ARG PRO MET SEQRES 3 D 152 THR TYR LYS ALA ALA VAL ASP LEU SER HIS PHE LEU LYS SEQRES 4 D 152 GLU LYS GLY GLY LEU GLU GLY LEU ILE HIS SER GLN ARG SEQRES 5 D 152 ARG GLN ASP ILE LEU ASP LEU TRP ILE TYR HIS THR GLN SEQRES 6 D 152 GLY TYR PHE PRO ASP TRP GLN ASN TYR THR PRO GLY PRO SEQRES 7 D 152 GLY VAL ARG TYR PRO LEU THR PHE GLY TRP CYS TYR LYS SEQRES 8 D 152 LEU VAL PRO VAL GLU PRO ASP LYS VAL GLU GLU ALA ASN SEQRES 9 D 152 LYS GLY GLU ASN THR SER LEU LEU HIS PRO VAL SER LEU SEQRES 10 D 152 HIS GLY MET ASP ASP PRO GLU ARG GLU VAL LEU GLU TRP SEQRES 11 D 152 ARG PHE ASP SER ARG LEU ALA PHE HIS HIS VAL ALA ARG SEQRES 12 D 152 GLU LEU HIS PRO GLU TYR PHE LYS ASN HET PBM B 710 4 HET PBM D 720 4 HETNAM PBM TRIMETHYL LEAD ION FORMUL 5 PBM 2(C3 H9 PB 1+) FORMUL 7 HOH *99(H2 O) HELIX 1 1 SER A 135 TYR A 137 5 3 HELIX 2 2 TYR B 81 GLU B 93 1 13 HELIX 3 3 GLN B 104 GLN B 118 1 15 HELIX 4 4 SER B 187 ALA B 190 5 4 HELIX 5 5 VAL B 194 LEU B 198 1 5 HELIX 6 6 PRO B 200 TYR B 202 5 3 HELIX 7 7 SER C 135 TYR C 137 5 3 HELIX 8 8 TYR D 81 LYS D 94 1 14 HELIX 9 9 GLN D 104 GLN D 118 1 15 HELIX 10 10 SER D 187 ALA D 190 5 4 HELIX 11 11 VAL D 194 LEU D 198 1 5 SHEET 1 A 5 VAL A 138 PRO A 140 0 SHEET 2 A 5 LEU A 86 ALA A 89 -1 N VAL A 88 O ALA A 139 SHEET 3 A 5 LYS A 108 ASN A 113 -1 N PHE A 109 O PHE A 87 SHEET 4 A 5 TRP A 119 SER A 124 -1 N ARG A 123 O GLN A 110 SHEET 5 A 5 GLU A 129 PRO A 134 -1 N ILE A 133 O TRP A 120 SHEET 1 B 2 TYR B 143 PRO B 147 0 SHEET 2 B 2 LEU B 181 PHE B 185 -1 N ARG B 184 O LYS B 144 SHEET 1 C 5 VAL C 138 PRO C 140 0 SHEET 2 C 5 LEU C 86 ALA C 89 -1 N VAL C 88 O ALA C 139 SHEET 3 C 5 LYS C 108 ASN C 113 -1 N PHE C 109 O PHE C 87 SHEET 4 C 5 TRP C 119 SER C 124 -1 N ARG C 123 O GLN C 110 SHEET 5 C 5 THR C 130 PRO C 134 -1 N ILE C 133 O TRP C 120 SHEET 1 D 2 TYR D 143 PRO D 147 0 SHEET 2 D 2 LEU D 181 PHE D 185 -1 N ARG D 184 O LYS D 144 LINK NE2 HIS B 192 PB PBM B 710 1555 1555 2.98 LINK PB PBM B 710 OD1 ASP D 86 1555 9655 3.02 CISPEP 1 GLY B 130 PRO B 131 0 -0.37 CISPEP 2 GLY D 130 PRO D 131 0 -0.29 SITE 1 AC1 4 HIS B 192 GLU C 98 ASP D 86 HIS D 89 SITE 1 AC2 2 PRO B 122 ASP D 108 CRYST1 107.800 107.800 229.100 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009276 0.005356 0.000000 0.00000 SCALE2 0.000000 0.010712 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004365 0.00000