PDB Short entry for 1EMW HEADER RIBOSOME 20-MAR-00 1EMW TITLE SOLUTION STRUCTURE OF THE RIBOSOMAL PROTEIN S16 FROM THERMUS TITLE 2 THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: S16 RIBOSOMAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET11C KEYWDS MIXED ALPHA/BETA PROTEIN, RIBOSOME EXPDTA SOLUTION NMR NUMMDL 47 AUTHOR P.ALLARD,A.V.RAK,B.T.WIMBERLY,W.M.CLEMONS JR.,A.KALININ,M.HELGSTRAND, AUTHOR 2 M.B.GARBER,V.RAMAKRISHNAN,T.HARD REVDAT 3 16-FEB-22 1EMW 1 REMARK SEQADV REVDAT 2 24-FEB-09 1EMW 1 VERSN REVDAT 1 09-AUG-00 1EMW 0 JRNL AUTH P.ALLARD,A.V.RAK,B.T.WIMBERLY,W.M.CLEMONS JR.,A.KALININ, JRNL AUTH 2 M.HELGSTRAND,M.B.GARBER,V.RAMAKRISHNAN,T.HARD JRNL TITL ANOTHER PIECE OF THE RIBOSOME: SOLUTION STRUCTURE OF S16 AND JRNL TITL 2 ITS LOCATION IN THE 30S SUBUNIT. JRNL REF STRUCTURE FOLD.DES. V. 8 875 2000 JRNL REFN ISSN 0969-2126 JRNL PMID 10997906 JRNL DOI 10.1016/S0969-2126(00)00177-5 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 5.3, X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1283 NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 47 DIHEDRAL ANGLE RESTRAINTS,31 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS. REMARK 4 REMARK 4 1EMW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-00. REMARK 100 THE DEPOSITION ID IS D_1000010733. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.2 M LICL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : S16; U-15N,13C; 50MM PHOSPHATE REMARK 210 BUFFER; 200 MM LICL; 1.2 MM S16; REMARK 210 U-15N; 50MM PHOSPHATE BUFFER; REMARK 210 200 MM LICL; 1.6 MM S16; 50MM REMARK 210 PHOSPHATE BUFFER; 200 MM LICL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG 3.3, X-PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 47 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 11 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 22 O LYS A 31 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 12 40.86 -143.27 REMARK 500 1 HIS A 13 -64.65 -135.44 REMARK 500 1 ASP A 23 -161.53 -71.69 REMARK 500 1 LYS A 27 -55.02 -127.65 REMARK 500 1 LYS A 43 42.21 -96.97 REMARK 500 1 ASP A 47 58.86 -165.02 REMARK 500 1 ASP A 52 70.84 -100.04 REMARK 500 1 VAL A 53 -30.90 -34.93 REMARK 500 1 VAL A 62 32.70 -99.14 REMARK 500 1 ARG A 85 61.79 -111.02 REMARK 500 2 PHE A 9 -152.97 -119.08 REMARK 500 2 LYS A 12 51.06 -176.64 REMARK 500 2 HIS A 13 -51.41 -123.74 REMARK 500 2 HIS A 16 124.89 -174.94 REMARK 500 2 ASP A 23 -159.81 -78.60 REMARK 500 2 ALA A 24 46.12 -160.83 REMARK 500 2 ARG A 25 61.35 -173.88 REMARK 500 2 ARG A 26 148.30 -176.22 REMARK 500 2 ARG A 28 -60.64 -165.66 REMARK 500 2 ASP A 29 39.71 -92.73 REMARK 500 2 LYS A 31 95.53 -175.16 REMARK 500 2 TYR A 32 178.72 -55.56 REMARK 500 2 VAL A 53 -30.21 -35.73 REMARK 500 2 VAL A 62 32.25 -98.70 REMARK 500 2 ASP A 68 48.27 -83.82 REMARK 500 2 THR A 69 -56.59 -166.03 REMARK 500 2 VAL A 79 -66.91 -95.30 REMARK 500 3 PHE A 9 -151.95 -122.89 REMARK 500 3 LYS A 12 47.98 -179.35 REMARK 500 3 HIS A 13 -64.86 -124.40 REMARK 500 3 ALA A 24 43.21 -153.14 REMARK 500 3 ARG A 25 52.74 -163.53 REMARK 500 3 ARG A 28 104.77 -175.28 REMARK 500 3 THR A 44 -41.20 -145.14 REMARK 500 3 VAL A 53 -32.81 -32.72 REMARK 500 3 VAL A 62 32.61 -98.96 REMARK 500 3 THR A 67 171.73 -54.22 REMARK 500 3 THR A 69 -56.61 -167.25 REMARK 500 3 VAL A 79 -60.71 -98.95 REMARK 500 3 GLU A 86 69.56 -169.33 REMARK 500 4 VAL A 2 105.15 -53.82 REMARK 500 4 PHE A 9 -152.16 -120.38 REMARK 500 4 SER A 11 -81.80 -63.97 REMARK 500 4 LYS A 12 46.79 -145.50 REMARK 500 4 HIS A 13 -65.84 -134.81 REMARK 500 4 LYS A 27 -76.13 -63.59 REMARK 500 4 LYS A 43 43.87 -91.98 REMARK 500 4 THR A 44 -53.47 -133.36 REMARK 500 4 TRP A 48 -35.04 -175.22 REMARK 500 4 VAL A 53 -29.67 -36.47 REMARK 500 REMARK 500 THIS ENTRY HAS 587 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QD7 RELATED DB: PDB REMARK 900 PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT DBREF 1EMW A 1 67 UNP P80379 RS16_THETH 1 67 SEQADV 1EMW ARG A 5 UNP P80379 SER 5 CONFLICT SEQADV 1EMW LEU A 6 UNP P80379 VAL 6 CONFLICT SEQADV 1EMW ALA A 7 UNP P80379 SER 7 CONFLICT SEQADV 1EMW ALA A 24 UNP P80379 VAL 24 CONFLICT SEQADV 1EMW LYS A 31 UNP P80379 ALA 31 CONFLICT SEQADV 1EMW ASP A 68 UNP P80379 SEE REMARK 999 SEQADV 1EMW THR A 69 UNP P80379 SEE REMARK 999 SEQADV 1EMW ALA A 70 UNP P80379 SEE REMARK 999 SEQADV 1EMW ARG A 71 UNP P80379 SEE REMARK 999 SEQADV 1EMW ARG A 72 UNP P80379 SEE REMARK 999 SEQADV 1EMW LEU A 73 UNP P80379 SEE REMARK 999 SEQADV 1EMW LEU A 74 UNP P80379 SEE REMARK 999 SEQADV 1EMW ARG A 75 UNP P80379 SEE REMARK 999 SEQADV 1EMW GLN A 76 UNP P80379 SEE REMARK 999 SEQADV 1EMW ALA A 77 UNP P80379 SEE REMARK 999 SEQADV 1EMW GLY A 78 UNP P80379 SEE REMARK 999 SEQADV 1EMW VAL A 79 UNP P80379 SEE REMARK 999 SEQADV 1EMW PHE A 80 UNP P80379 SEE REMARK 999 SEQADV 1EMW ARG A 81 UNP P80379 SEE REMARK 999 SEQADV 1EMW GLN A 82 UNP P80379 SEE REMARK 999 SEQADV 1EMW GLU A 83 UNP P80379 SEE REMARK 999 SEQADV 1EMW ALA A 84 UNP P80379 SEE REMARK 999 SEQADV 1EMW ARG A 85 UNP P80379 SEE REMARK 999 SEQADV 1EMW GLU A 86 UNP P80379 SEE REMARK 999 SEQADV 1EMW GLY A 87 UNP P80379 SEE REMARK 999 SEQADV 1EMW ALA A 88 UNP P80379 SEE REMARK 999 SEQRES 1 A 88 MET VAL LYS ILE ARG LEU ALA ARG PHE GLY SER LYS HIS SEQRES 2 A 88 ASN PRO HIS TYR ARG ILE VAL VAL THR ASP ALA ARG ARG SEQRES 3 A 88 LYS ARG ASP GLY LYS TYR ILE GLU LYS ILE GLY TYR TYR SEQRES 4 A 88 ASP PRO ARG LYS THR THR PRO ASP TRP LEU LYS VAL ASP SEQRES 5 A 88 VAL GLU ARG ALA ARG TYR TRP LEU SER VAL GLY ALA GLN SEQRES 6 A 88 PRO THR ASP THR ALA ARG ARG LEU LEU ARG GLN ALA GLY SEQRES 7 A 88 VAL PHE ARG GLN GLU ALA ARG GLU GLY ALA HELIX 1 1 ASP A 52 VAL A 62 1 11 HELIX 2 2 THR A 67 ARG A 75 1 9 SHEET 1 A 4 LYS A 3 ARG A 8 0 SHEET 2 A 4 TYR A 17 THR A 22 -1 O ARG A 18 N ALA A 7 SHEET 3 A 4 GLU A 34 TYR A 39 -1 O GLU A 34 N VAL A 21 SHEET 4 A 4 LYS A 50 VAL A 51 -1 N LYS A 50 O TYR A 38 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000