PDB Short entry for 1EVV HEADER RNA 20-APR-00 1EVV TITLE CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANINE TRANSFER RNA; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES; SOURCE 3 ORGANISM_TAXID: 4930 KEYWDS TRANSFER RNA, PHENYLALANINE, PHE-TRNA, YEAST, AMINO-ACID TRANSPORT, KEYWDS 2 RNA EXPDTA X-RAY DIFFRACTION AUTHOR L.JOVINE,S.DJORDJEVIC,D.RHODES REVDAT 6 09-AUG-23 1EVV 1 REMARK LINK REVDAT 5 13-JUL-11 1EVV 1 VERSN REVDAT 4 24-FEB-09 1EVV 1 VERSN REVDAT 3 01-APR-03 1EVV 1 JRNL REVDAT 2 14-AUG-00 1EVV 1 JRNL REVDAT 1 01-MAY-00 1EVV 0 JRNL AUTH L.JOVINE,S.DJORDJEVIC,D.RHODES JRNL TITL THE CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRNA AT 2.0 A JRNL TITL 2 RESOLUTION: CLEAVAGE BY MG(2+) IN 15-YEAR OLD CRYSTALS. JRNL REF J.MOL.BIOL. V. 301 401 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10926517 JRNL DOI 10.1006/JMBI.2000.3950 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.E.LADNER,J.T.FINCH,A.KLUG,B.F.CLARK REMARK 1 TITL HIGH-RESOLUTION X-RAY DIFFRACTION STUDIES ON A PURE SPECIES REMARK 1 TITL 2 OF TRANSFER RNA REMARK 1 REF J.MOL.BIOL. V. 72 99 1972 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.D.ROBERTUS,J.E.LADNER,J.T.FINCH,D.RHODES,R.S.BROWN, REMARK 1 AUTH 2 B.F.C.CLARK,A.KLUG REMARK 1 TITL STRUCTURE OF YEAST PHENYLALANINE TRNA AT 3 A RESOLUTION REMARK 1 REF NATURE V. 250 546 1974 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.E.LADNER,A.JACK,J.D.ROBERTUS,R.S.BROWN,D.RHODES,B.F.CLARK, REMARK 1 AUTH 2 A.KLUG REMARK 1 TITL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.5 A REMARK 1 TITL 2 RESOLUTION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 72 4414 1975 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 4 REMARK 1 AUTH B.HINGERTY,R.S.BROWN,A.JACK REMARK 1 TITL FURTHER REFINEMENT OF THE STRUCTURE OF YEAST TRNA PHE REMARK 1 REF J.MOL.BIOL. V. 124 523 1978 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH E.WESTHOF,M.SUNDARALINGAM REMARK 1 TITL RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST REMARK 1 TITL 2 PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND REMARK 1 TITL 3 DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST REMARK 1 TITL 4 ANGLES REMARK 1 REF BIOCHEMISTRY V. 25 4868 1986 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 6 REMARK 1 AUTH E.WESTHOF,P.DUMAS,D.MORAS REMARK 1 TITL RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST REMARK 1 TITL 2 ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.A V. 44 112 1988 REMARK 1 REFN ISSN 0108-7673 REMARK 1 DOI 10.1107/S010876738700446X REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : PARKINSON ET AL. REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 810557.420 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.5 REMARK 3 NUMBER OF REFLECTIONS : 13678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.800 REMARK 3 FREE R VALUE TEST SET COUNT : 926 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1432 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 101 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.038 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1652 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.86000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : -1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.76000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 12.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.47 REMARK 3 BSOL : 113.1 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : TRNA_RNA.PARAM REMARK 3 PARAMETER FILE 2 : TRNA_ION.PARAM REMARK 3 PARAMETER FILE 3 : TRNA_LIGAND.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARA REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TRNA_RNA.TOP REMARK 3 TOPOLOGY FILE 2 : TRNA_ION.TOP REMARK 3 TOPOLOGY FILE 3 : TRNA_LIGAND.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A LOW RESOLUTION LIMIT OF 6.O A WAS REMARK 3 USED FOR INITIAL B FACTOR AND BULK SOLVENT CORRECTIONS. THE REMARK 3 OCCUPANCY OF NUCLEOTIDE D16, AS WELL AS THOSE OF ATOMS P, O1P, REMARK 3 O2P, O5* AND C5* OF NUCLEOTIDE D17, WERE REFINED TO ACCOUNT FOR REMARK 3 MG2+-CATALYSED PARTIAL CLEAVAGE OF THE TRNA BACKBONE AT EITHER REMARK 3 SIDE OF D16. DENSITY FOR THIS PART OF THE MOLECULE WAS POOR AND REMARK 3 ITS PLACEMENT SHOULD THEREFORE BE CONSIDERED TENTATIVE. REMARK 3 OCCUPANCIES OF ALL MG2+ IONS, THE SPERMINE AND ALL WATER REMARK 3 MOLECULES WERE ALSO REFINED. REMARK 4 REMARK 4 1EVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-00. REMARK 100 THE DEPOSITION ID IS D_1000010940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13678 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.17100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE, CNS REMARK 200 STARTING MODEL: PDB ENTRY 1TRA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS GROWN AT 277 K IN 0.010 M REMARK 280 TRIS-HCL PH 7.5, 0.012 M MGCL2, 0.002 M SPERMINE, 6% 1,6- REMARK 280 HEXANEDIOL. CRYOPROTECTION CONDITIONS: AFTER WASHING IN FRESH REMARK 280 CRYSTALLIZATION SOLUTION FOR 10 MIN AND ADDITION OF 30% MPD (V/V) REMARK 280 , CRYSTALS WERE FLASH-FROZEN IN LIQUID NITROGEN, DIALYSIS, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.49400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 1 P G A 1 OP3 -0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 18 C5' - C4' - O4' ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G A 18 0.05 SIDE CHAIN REMARK 500 G A 19 0.06 SIDE CHAIN REMARK 500 A A 62 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 905 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 11 OP1 REMARK 620 2 C A 11 OP2 73.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 19 OP1 REMARK 620 2 HOH A 918 O 106.6 REMARK 620 3 HOH A 919 O 99.8 87.4 REMARK 620 4 HOH A 920 O 170.7 82.5 81.7 REMARK 620 5 HOH A 921 O 94.7 89.9 165.5 83.8 REMARK 620 6 HOH A 922 O 88.9 163.1 83.5 82.1 95.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 20 OP1 REMARK 620 2 A A 21 OP2 101.1 REMARK 620 3 HOH A1105 O 108.3 104.2 REMARK 620 4 HOH A1114 O 84.1 162.8 89.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 907 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 43 OP2 REMARK 620 2 HOH A 971 O 127.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 909 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 52 OP1 REMARK 620 2 HOH A1043 O 125.6 REMARK 620 3 HOH A1062 O 102.3 109.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 908 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 71 O3' REMARK 620 2 C A 72 OP1 67.4 REMARK 620 3 C A 72 OP2 72.1 65.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 904 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 936 O REMARK 620 2 HOH A 937 O 85.9 REMARK 620 3 HOH A 938 O 92.9 173.6 REMARK 620 4 HOH A 939 O 170.5 86.1 94.5 REMARK 620 5 HOH A 940 O 98.7 87.7 98.7 86.1 REMARK 620 6 HOH A 941 O 74.9 91.4 82.3 100.1 173.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 909 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 910 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TNA RELATED DB: PDB REMARK 900 RELATED ID: 1TRA RELATED DB: PDB DBREF 1EVV A 1 76 GB 176479 M10263 1 76 SEQRES 1 A 76 G C G G A U U U A 2MG C U C SEQRES 2 A 76 A G H2U H2U G G G A G A G C M2G SEQRES 3 A 76 C C A G A OMC U OMG A A YG A PSU SEQRES 4 A 76 5MC U G G A G 7MG U C 5MC U G U SEQRES 5 A 76 G 5MU PSU C G 1MA U C C A C A G SEQRES 6 A 76 A A U U C G C A C C A MODRES 1EVV 2MG A 10 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1EVV H2U A 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1EVV H2U A 17 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1EVV M2G A 26 G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1EVV OMC A 32 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE MODRES 1EVV OMG A 34 G O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1EVV YG A 37 G WYBUTOSINE MODRES 1EVV PSU A 39 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1EVV 5MC A 40 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1EVV 7MG A 46 G MODRES 1EVV 5MC A 49 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1EVV 5MU A 54 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 1EVV PSU A 55 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1EVV 1MA A 58 A HET 2MG A 10 24 HET H2U A 16 20 HET H2U A 17 20 HET M2G A 26 25 HET OMC A 32 21 HET OMG A 34 24 HET YG A 37 39 HET PSU A 39 20 HET 5MC A 40 21 HET 7MG A 46 24 HET 5MC A 49 21 HET 5MU A 54 21 HET PSU A 55 20 HET 1MA A 58 23 HET MG A 901 1 HET MG A 902 1 HET MG A 903 1 HET MG A 904 1 HET MG A 905 1 HET MG A 906 1 HET MG A 907 1 HET MG A 908 1 HET MG A 909 1 HET MG A 910 1 HET SPM A 501 14 HETNAM 2MG 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETNAM M2G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM OMG O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM YG WYBUTOSINE HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM 5MC 5-METHYLCYTIDINE-5'-MONOPHOSPHATE HETNAM 7MG 7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE HETNAM 5MU 5-METHYLURIDINE 5'-MONOPHOSPHATE HETNAM 1MA 6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SPM SPERMINE HETSYN YG Y-BASE; 1H-IMIDAZO(1,2-ALPHA)PURINE-7-BUTANOIC ACID,4, HETSYN 2 YG 9-DIHYDRO-ALPHA-((METHOXYCARBONYL)AMINO)-4,6-DIMETHYL- HETSYN 3 YG 9-OXO-METHYL ESTER FORMUL 1 2MG C11 H16 N5 O8 P FORMUL 1 H2U 2(C9 H15 N2 O9 P) FORMUL 1 M2G C12 H18 N5 O8 P FORMUL 1 OMC C10 H16 N3 O8 P FORMUL 1 OMG C11 H16 N5 O8 P FORMUL 1 YG C21 H29 N6 O12 P FORMUL 1 PSU 2(C9 H13 N2 O9 P) FORMUL 1 5MC 2(C10 H16 N3 O8 P) FORMUL 1 7MG C11 H18 N5 O8 P FORMUL 1 5MU C10 H15 N2 O9 P FORMUL 1 1MA C11 H16 N5 O7 P FORMUL 2 MG 10(MG 2+) FORMUL 12 SPM C10 H26 N4 FORMUL 13 HOH *220(H2 O) LINK O3' A A 9 P 2MG A 10 1555 1555 1.63 LINK O3' 2MG A 10 P C A 11 1555 1555 1.59 LINK O3' G A 15 P H2U A 16 1555 1555 1.61 LINK O3' H2U A 16 P H2U A 17 1555 1555 1.62 LINK O3' H2U A 17 P G A 18 1555 1555 1.60 LINK O3' C A 25 P M2G A 26 1555 1555 1.61 LINK O3' M2G A 26 P C A 27 1555 1555 1.60 LINK O3' A A 31 P OMC A 32 1555 1555 1.61 LINK O3' OMC A 32 P U A 33 1555 1555 1.61 LINK O3' U A 33 P OMG A 34 1555 1555 1.61 LINK O3' OMG A 34 P A A 35 1555 1555 1.61 LINK O3' A A 36 P YG A 37 1555 1555 1.61 LINK O3' YG A 37 P A A 38 1555 1555 1.61 LINK O3' A A 38 P PSU A 39 1555 1555 1.61 LINK O3' PSU A 39 P 5MC A 40 1555 1555 1.61 LINK O3' 5MC A 40 P U A 41 1555 1555 1.60 LINK O3' G A 45 P 7MG A 46 1555 1555 1.60 LINK O3' 7MG A 46 P U A 47 1555 1555 1.63 LINK O3' C A 48 P 5MC A 49 1555 1555 1.60 LINK O3' 5MC A 49 P U A 50 1555 1555 1.61 LINK O3' G A 53 P 5MU A 54 1555 1555 1.64 LINK O3' 5MU A 54 P PSU A 55 1555 1555 1.62 LINK O3' PSU A 55 P C A 56 1555 1555 1.61 LINK O3' G A 57 P 1MA A 58 1555 1555 1.59 LINK O3' 1MA A 58 P U A 59 1555 1555 1.64 LINK OP1 C A 11 MG MG A 905 1555 1555 1.95 LINK OP2 C A 11 MG MG A 905 1555 1555 2.30 LINK OP1 G A 19 MG MG A 903 1555 1555 2.05 LINK OP1 G A 20 MG MG A 902 1555 1555 1.88 LINK OP2 A A 21 MG MG A 902 1555 1555 2.04 LINK OP1 G A 30 MG MG A 910 1555 1555 1.84 LINK OP1 A A 36 MG MG A 906 1555 1555 1.76 LINK OP2 G A 43 MG MG A 907 1555 1555 2.16 LINK OP1 U A 52 MG MG A 909 1555 1555 2.23 LINK O3' G A 71 MG MG A 908 1555 1555 2.00 LINK OP1 C A 72 MG MG A 908 1555 1555 2.47 LINK OP2 C A 72 MG MG A 908 1555 1555 2.25 LINK MG MG A 902 O HOH A1105 1555 1555 1.93 LINK MG MG A 902 O HOH A1114 1555 1555 2.17 LINK MG MG A 903 O HOH A 918 1555 1555 1.84 LINK MG MG A 903 O HOH A 919 1555 1555 2.20 LINK MG MG A 903 O HOH A 920 1555 1555 2.07 LINK MG MG A 903 O HOH A 921 1555 1555 2.10 LINK MG MG A 903 O HOH A 922 1555 1555 1.92 LINK MG MG A 904 O HOH A 936 1555 1555 2.14 LINK MG MG A 904 O HOH A 937 1555 1555 1.92 LINK MG MG A 904 O HOH A 938 1555 1555 1.76 LINK MG MG A 904 O HOH A 939 1555 1555 1.97 LINK MG MG A 904 O HOH A 940 1555 1555 2.06 LINK MG MG A 904 O HOH A 941 1555 1555 1.99 LINK MG MG A 907 O HOH A 971 1555 1555 2.13 LINK MG MG A 909 O HOH A1043 1555 1555 2.13 LINK MG MG A 909 O HOH A1062 1555 1555 2.10 SITE 1 AC1 5 U A 12 HOH A 985 HOH A 986 HOH A 987 SITE 2 AC1 5 HOH A 988 SITE 1 AC2 4 G A 20 A A 21 HOH A1105 HOH A1114 SITE 1 AC3 6 G A 19 HOH A 918 HOH A 919 HOH A 920 SITE 2 AC3 6 HOH A 921 HOH A 922 SITE 1 AC4 6 HOH A 936 HOH A 937 HOH A 938 HOH A 939 SITE 2 AC4 6 HOH A 940 HOH A 941 SITE 1 AC5 4 2MG A 10 C A 11 HOH A 977 HOH A1034 SITE 1 AC6 2 A A 35 A A 36 SITE 1 AC7 2 G A 43 HOH A 971 SITE 1 AC8 2 G A 71 C A 72 SITE 1 AC9 3 U A 52 HOH A1043 HOH A1062 SITE 1 BC1 2 A A 29 G A 30 SITE 1 BC2 8 A A 14 U A 52 G A 53 5MU A 54 SITE 2 BC2 8 PSU A 55 G A 57 1MA A 58 HOH A1108 CRYST1 55.252 32.988 61.882 90.00 90.38 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018099 0.000000 0.000120 0.00000 SCALE2 0.000000 0.030314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016160 0.00000