PDB Short entry for 1EY2 HEADER OXIDOREDUCTASE 05-MAY-00 1EY2 TITLE HUMAN HOMOGENTISATE DIOXYGENASE WITH FE(II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOGENTISATE 1,2-DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS JELLY ROLL, BETA SANDWICH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.E.TIMM,G.P.TITUS,M.A.PENALVA,H.A.MUELLER,S.M.DE CORDOBA REVDAT 5 03-NOV-21 1EY2 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1EY2 1 VERSN REVDAT 3 24-FEB-09 1EY2 1 VERSN REVDAT 2 01-APR-03 1EY2 1 JRNL REVDAT 1 05-NOV-00 1EY2 0 JRNL AUTH G.P.TITUS,H.A.MUELLER,J.BURGNER,S.RODRIGUEZ DE CORDOBA, JRNL AUTH 2 M.A.PENALVA,D.E.TIMM JRNL TITL CRYSTAL STRUCTURE OF HUMAN HOMOGENTISATE DIOXYGENASE. JRNL REF NAT.STRUCT.BIOL. V. 7 542 2000 JRNL REFN ISSN 1072-8368 JRNL PMID 10876237 JRNL DOI 10.1038/76756 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 31486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1579 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3311 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.930 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-00. REMARK 100 THE DEPOSITION ID IS D_1000011011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 100. REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31495 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.41200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, IMIDAZOLE, FESO4, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.57350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.57350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.57350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.57350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.57350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.57350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER CONSTRUCTED FROM TWO- REMARK 300 FOLD AND THREE-FOLD CRYSTALLOGRAPHIC OPERATIONS ON THE ASYMMETRIC REMARK 300 UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 46080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 77820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -246.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 78.90450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 136.66660 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -78.90450 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 136.66660 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 78.90450 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 136.66660 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 47.57350 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 47.57350 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -78.90450 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 136.66660 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 47.57350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -25 REMARK 465 GLY A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 HIS A -10 REMARK 465 ILE A -9 REMARK 465 ASP A -8 REMARK 465 ASP A -7 REMARK 465 ASP A -6 REMARK 465 ASP A -5 REMARK 465 LYS A -4 REMARK 465 HIS A -3 REMARK 465 MSE A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 GLY A 348 REMARK 465 HIS A 349 REMARK 465 TYR A 350 REMARK 465 GLU A 351 REMARK 465 ALA A 352 REMARK 465 LYS A 353 REMARK 465 GLN A 354 REMARK 465 GLY A 355 REMARK 465 CYS A 418 REMARK 465 LEU A 419 REMARK 465 ASP A 420 REMARK 465 GLU A 421 REMARK 465 ASN A 422 REMARK 465 TYR A 423 REMARK 465 HIS A 424 REMARK 465 LYS A 425 REMARK 465 CYS A 426 REMARK 465 TRP A 427 REMARK 465 GLU A 428 REMARK 465 PRO A 429 REMARK 465 PRO A 441 REMARK 465 ALA A 442 REMARK 465 GLU A 443 REMARK 465 PRO A 444 REMARK 465 ASN A 445 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 142 SE MSE A 142 CE -0.358 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 159 -59.84 -122.24 REMARK 500 ASN A 177 4.93 91.33 REMARK 500 GLU A 194 -179.51 -177.62 REMARK 500 LEU A 221 -127.38 48.76 REMARK 500 ALA A 289 -66.07 -136.15 REMARK 500 ASP A 291 174.55 69.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A1001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 335 ND1 REMARK 620 2 GLU A 341 OE1 144.2 REMARK 620 3 GLU A 341 OE2 94.7 50.9 REMARK 620 4 HIS A 371 NE2 88.6 78.9 83.5 REMARK 620 5 HOH A2231 O 129.4 86.4 133.1 109.3 REMARK 620 6 HOH A2232 O 79.3 113.6 101.9 167.1 75.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EYB RELATED DB: PDB REMARK 900 1EYB CONTAINS THE APO FORM OF THE SAME PROTEIN. DBREF 1EY2 A 1 445 UNP Q93099 HGD_HUMAN 1 445 SEQADV 1EY2 MSE A -25 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 GLY A -24 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 HIS A -23 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 HIS A -22 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 HIS A -21 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 HIS A -20 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 HIS A -19 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 HIS A -18 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 HIS A -17 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 HIS A -16 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 HIS A -15 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 HIS A -14 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 SER A -13 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 SER A -12 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 GLY A -11 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 HIS A -10 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 ILE A -9 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 ASP A -8 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 ASP A -7 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 ASP A -6 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 ASP A -5 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 LYS A -4 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 HIS A -3 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 MSE A -2 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 GLY A -1 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 SER A 0 UNP Q93099 EXPRESSION TAG SEQADV 1EY2 MSE A 1 UNP Q93099 MET 1 ENGINEERED MUTATION SEQADV 1EY2 MSE A 142 UNP Q93099 MET 142 ENGINEERED MUTATION SEQADV 1EY2 MSE A 172 UNP Q93099 MET 172 ENGINEERED MUTATION SEQADV 1EY2 MSE A 186 UNP Q93099 MET 186 ENGINEERED MUTATION SEQADV 1EY2 MSE A 283 UNP Q93099 MET 283 ENGINEERED MUTATION SEQADV 1EY2 MSE A 339 UNP Q93099 MET 339 ENGINEERED MUTATION SEQADV 1EY2 MSE A 343 UNP Q93099 MET 343 ENGINEERED MUTATION SEQADV 1EY2 MSE A 368 UNP Q93099 MET 368 ENGINEERED MUTATION SEQADV 1EY2 MSE A 396 UNP Q93099 MET 396 ENGINEERED MUTATION SEQADV 1EY2 MSE A 399 UNP Q93099 MET 399 ENGINEERED MUTATION SEQRES 1 A 471 MSE GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 471 SER GLY HIS ILE ASP ASP ASP ASP LYS HIS MSE GLY SER SEQRES 3 A 471 MSE ALA GLU LEU LYS TYR ILE SER GLY PHE GLY ASN GLU SEQRES 4 A 471 CYS SER SER GLU ASP PRO ARG CYS PRO GLY SER LEU PRO SEQRES 5 A 471 GLU GLY GLN ASN ASN PRO GLN VAL CYS PRO TYR ASN LEU SEQRES 6 A 471 TYR ALA GLU GLN LEU SER GLY SER ALA PHE THR CYS PRO SEQRES 7 A 471 ARG SER THR ASN LYS ARG SER TRP LEU TYR ARG ILE LEU SEQRES 8 A 471 PRO SER VAL SER HIS LYS PRO PHE GLU SER ILE ASP GLU SEQRES 9 A 471 GLY HIS VAL THR HIS ASN TRP ASP GLU VAL ASP PRO ASP SEQRES 10 A 471 PRO ASN GLN LEU ARG TRP LYS PRO PHE GLU ILE PRO LYS SEQRES 11 A 471 ALA SER GLN LYS LYS VAL ASP PHE VAL SER GLY LEU HIS SEQRES 12 A 471 THR LEU CYS GLY ALA GLY ASP ILE LYS SER ASN ASN GLY SEQRES 13 A 471 LEU ALA ILE HIS ILE PHE LEU CYS ASN THR SER MSE GLU SEQRES 14 A 471 ASN ARG CYS PHE TYR ASN SER ASP GLY ASP PHE LEU ILE SEQRES 15 A 471 VAL PRO GLN LYS GLY ASN LEU LEU ILE TYR THR GLU PHE SEQRES 16 A 471 GLY LYS MSE LEU VAL GLN PRO ASN GLU ILE CYS VAL ILE SEQRES 17 A 471 GLN ARG GLY MSE ARG PHE SER ILE ASP VAL PHE GLU GLU SEQRES 18 A 471 THR ARG GLY TYR ILE LEU GLU VAL TYR GLY VAL HIS PHE SEQRES 19 A 471 GLU LEU PRO ASP LEU GLY PRO ILE GLY ALA ASN GLY LEU SEQRES 20 A 471 ALA ASN PRO ARG ASP PHE LEU ILE PRO ILE ALA TRP TYR SEQRES 21 A 471 GLU ASP ARG GLN VAL PRO GLY GLY TYR THR VAL ILE ASN SEQRES 22 A 471 LYS TYR GLN GLY LYS LEU PHE ALA ALA LYS GLN ASP VAL SEQRES 23 A 471 SER PRO PHE ASN VAL VAL ALA TRP HIS GLY ASN TYR THR SEQRES 24 A 471 PRO TYR LYS TYR ASN LEU LYS ASN PHE MSE VAL ILE ASN SEQRES 25 A 471 SER VAL ALA PHE ASP HIS ALA ASP PRO SER ILE PHE THR SEQRES 26 A 471 VAL LEU THR ALA LYS SER VAL ARG PRO GLY VAL ALA ILE SEQRES 27 A 471 ALA ASP PHE VAL ILE PHE PRO PRO ARG TRP GLY VAL ALA SEQRES 28 A 471 ASP LYS THR PHE ARG PRO PRO TYR TYR HIS ARG ASN CYS SEQRES 29 A 471 MSE SER GLU PHE MSE GLY LEU ILE ARG GLY HIS TYR GLU SEQRES 30 A 471 ALA LYS GLN GLY GLY PHE LEU PRO GLY GLY GLY SER LEU SEQRES 31 A 471 HIS SER THR MSE THR PRO HIS GLY PRO ASP ALA ASP CYS SEQRES 32 A 471 PHE GLU LYS ALA SER LYS VAL LYS LEU ALA PRO GLU ARG SEQRES 33 A 471 ILE ALA ASP GLY THR MSE ALA PHE MSE PHE GLU SER SER SEQRES 34 A 471 LEU SER LEU ALA VAL THR LYS TRP GLY LEU LYS ALA SER SEQRES 35 A 471 ARG CYS LEU ASP GLU ASN TYR HIS LYS CYS TRP GLU PRO SEQRES 36 A 471 LEU LYS SER HIS PHE THR PRO ASN SER ARG ASN PRO ALA SEQRES 37 A 471 GLU PRO ASN MODRES 1EY2 MSE A 142 MET SELENOMETHIONINE MODRES 1EY2 MSE A 172 MET SELENOMETHIONINE MODRES 1EY2 MSE A 186 MET SELENOMETHIONINE MODRES 1EY2 MSE A 283 MET SELENOMETHIONINE MODRES 1EY2 MSE A 339 MET SELENOMETHIONINE MODRES 1EY2 MSE A 343 MET SELENOMETHIONINE MODRES 1EY2 MSE A 368 MET SELENOMETHIONINE MODRES 1EY2 MSE A 396 MET SELENOMETHIONINE MODRES 1EY2 MSE A 399 MET SELENOMETHIONINE HET MSE A 142 8 HET MSE A 172 8 HET MSE A 186 8 HET MSE A 283 8 HET MSE A 339 8 HET MSE A 343 8 HET MSE A 368 8 HET MSE A 396 8 HET MSE A 399 8 HET FE2 A1001 1 HETNAM MSE SELENOMETHIONINE HETNAM FE2 FE (II) ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 FE2 FE 2+ FORMUL 3 HOH *232(H2 O) HELIX 1 1 CYS A 35 LEU A 39 5 5 HELIX 2 2 PRO A 52 ASN A 56 5 5 HELIX 3 3 LEU A 213 GLY A 217 5 5 HELIX 4 4 ASN A 223 ARG A 225 5 3 HELIX 5 5 LYS A 280 PHE A 282 5 3 HELIX 6 6 ASP A 294 ILE A 297 5 4 HELIX 7 7 ASP A 374 VAL A 384 1 11 HELIX 8 8 THR A 409 SER A 416 1 8 SHEET 1 A 9 TYR A 6 SER A 8 0 SHEET 2 A 9 PHE A 227 PRO A 230 -1 N ILE A 229 O ILE A 7 SHEET 3 A 9 TYR A 275 ASN A 278 -1 O LYS A 276 N LEU A 228 SHEET 4 A 9 GLU A 178 ILE A 182 -1 O ILE A 179 N TYR A 277 SHEET 5 A 9 GLY A 152 LYS A 160 -1 O PHE A 154 N ILE A 182 SHEET 6 A 9 THR A 196 TYR A 204 -1 N ARG A 197 O LYS A 160 SHEET 7 A 9 ASN A 129 CYS A 138 -1 O GLY A 130 N TYR A 204 SHEET 8 A 9 LEU A 116 ASP A 124 -1 O HIS A 117 N ILE A 135 SHEET 9 A 9 ALA A 407 VAL A 408 -1 N ALA A 407 O GLY A 121 SHEET 1 B 4 CYS A 14 GLU A 17 0 SHEET 2 B 4 VAL A 265 GLY A 270 -1 O TRP A 268 N SER A 16 SHEET 3 B 4 ARG A 58 ARG A 63 -1 N TRP A 60 O HIS A 269 SHEET 4 B 4 TYR A 40 SER A 45 -1 N TYR A 40 O ARG A 63 SHEET 1 C 4 GLU A 74 SER A 75 0 SHEET 2 C 4 LYS A 252 VAL A 260 -1 N ALA A 255 O GLU A 74 SHEET 3 C 4 GLN A 238 TYR A 249 -1 N VAL A 239 O ASP A 259 SHEET 4 C 4 ARG A 145 ASN A 149 1 N CYS A 146 O THR A 244 SHEET 1 D 6 LEU A 95 TRP A 97 0 SHEET 2 D 6 GLY A 362 HIS A 365 -1 O GLY A 362 N TRP A 97 SHEET 3 D 6 SER A 340 ARG A 347 -1 O GLU A 341 N HIS A 365 SHEET 4 D 6 MSE A 396 SER A 402 -1 O MSE A 396 N ILE A 346 SHEET 5 D 6 ALA A 311 PHE A 318 -1 N ASP A 314 O GLU A 401 SHEET 6 D 6 THR A 299 LYS A 304 -1 N VAL A 300 O PHE A 315 SHEET 1 E 3 GLY A 170 VAL A 174 0 SHEET 2 E 3 LEU A 163 THR A 167 -1 O LEU A 163 N VAL A 174 SHEET 3 E 3 PHE A 188 ASP A 191 -1 O SER A 189 N TYR A 166 SHEET 1 F 2 ARG A 321 GLY A 323 0 SHEET 2 F 2 GLU A 389 ILE A 391 -1 O GLU A 389 N GLY A 323 LINK C SER A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N GLU A 143 1555 1555 1.33 LINK C LYS A 171 N MSE A 172 1555 1555 1.33 LINK C MSE A 172 N LEU A 173 1555 1555 1.33 LINK C GLY A 185 N MSE A 186 1555 1555 1.33 LINK C MSE A 186 N ARG A 187 1555 1555 1.34 LINK C PHE A 282 N MSE A 283 1555 1555 1.33 LINK C MSE A 283 N VAL A 284 1555 1555 1.33 LINK C CYS A 338 N MSE A 339 1555 1555 1.33 LINK C MSE A 339 N SER A 340 1555 1555 1.33 LINK C PHE A 342 N MSE A 343 1555 1555 1.32 LINK C MSE A 343 N GLY A 344 1555 1555 1.33 LINK C THR A 367 N MSE A 368 1555 1555 1.33 LINK C MSE A 368 N THR A 369 1555 1555 1.33 LINK C THR A 395 N MSE A 396 1555 1555 1.33 LINK C MSE A 396 N ALA A 397 1555 1555 1.33 LINK C PHE A 398 N MSE A 399 1555 1555 1.32 LINK C MSE A 399 N PHE A 400 1555 1555 1.33 LINK ND1 HIS A 335 FE FE2 A1001 1555 1555 2.40 LINK OE1 GLU A 341 FE FE2 A1001 1555 1555 2.68 LINK OE2 GLU A 341 FE FE2 A1001 1555 1555 2.40 LINK NE2 HIS A 371 FE FE2 A1001 1555 1555 2.33 LINK FE FE2 A1001 O HOH A2231 1555 1555 2.60 LINK FE FE2 A1001 O HOH A2232 1555 1555 1.87 SITE 1 AC1 5 HIS A 335 GLU A 341 HIS A 371 HOH A2231 SITE 2 AC1 5 HOH A2232 CRYST1 157.809 157.809 95.147 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006337 0.003659 0.000000 0.00000 SCALE2 0.000000 0.007317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010510 0.00000