PDB Short entry for 1F4I HEADER DNA BINDING PROTEIN,TRANSCRIPTION 07-JUN-00 1F4I TITLE SOLUTION STRUCTURE OF THE HHR23A UBA(2) MUTANT P333E, DEFICIENT IN TITLE 2 BINDING THE HIV-1 ACCESSORY PROTEIN VPR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN PROTEIN RAD23 HOMOLOG A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL UBA DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 4 OF THIS PEPTIDE NATURALLY OCCURS IN HUMANS (HOMO SAPIENS). KEYWDS ALPHA HELICAL BUNDLE, DNA BINDING PROTEIN, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR E.S.WITHERS-WARD,T.D.MUELLER,I.S.CHEN,J.FEIGON REVDAT 3 03-NOV-21 1F4I 1 REMARK SEQADV REVDAT 2 24-FEB-09 1F4I 1 VERSN REVDAT 1 20-DEC-00 1F4I 0 JRNL AUTH E.S.WITHERS-WARD,T.D.MUELLER,I.S.CHEN,J.FEIGON JRNL TITL BIOCHEMICAL AND STRUCTURAL ANALYSIS OF THE INTERACTION JRNL TITL 2 BETWEEN THE UBA(2) DOMAIN OF THE DNA REPAIR PROTEIN HHR23A JRNL TITL 3 AND HIV-1 VPR. JRNL REF BIOCHEMISTRY V. 39 14103 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 11087358 JRNL DOI 10.1021/BI0017071 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.DIECKMANN,E.S.WITHERS-WARD,M.A.JAROSINSKI,C.F.LIU, REMARK 1 AUTH 2 I.S.Y.CHEN,J.FEIGON REMARK 1 TITL STRUCTURE OF A HUMAN DNA REPAIR PROTEIN UBA DOMAIN THAT REMARK 1 TITL 2 INTERACTS WITH HIV-1 VPR REMARK 1 REF NAT.STRUCT.BIOL. V. 5 1042 1998 REMARK 1 REFN ISSN 1072-8368 REMARK 1 DOI 10.1038/4220 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, X-PLOR 3.1 REMARK 3 AUTHORS : BRUKER, KARLSRUHE (XWINNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TOTAL NUMBER OF RESTRAINTS 826, REMARK 3 204 INTRARESIDUAL, REMARK 3 182 SEQUENTIAL, REMARK 3 226 MEDIUM RANGE (|I-J|<5), REMARK 3 214 LONG RANGE (|I-J|>=5) REMARK 4 REMARK 4 1F4I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011232. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50MM SODIUM PHOSPHATE, 150MM REMARK 210 SODIUM CHLORIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM UBA(2) DOMAIN MUTANT P333E; REMARK 210 50MM PHOSPHATE BUFFER, 150MM REMARK 210 SODIUM CHLORIDE; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.10, X-PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING, DISTANCE REMARK 210 GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 12 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 14 -140.68 -109.15 REMARK 500 1 GLU A 16 -19.30 -48.10 REMARK 500 1 LYS A 28 58.56 37.86 REMARK 500 1 ASN A 29 -146.95 -106.85 REMARK 500 1 GLU A 30 -76.46 -135.23 REMARK 500 1 PHE A 42 110.46 -173.71 REMARK 500 1 ASP A 43 -149.65 -110.69 REMARK 500 2 PHE A 14 -144.82 -108.42 REMARK 500 2 LYS A 28 59.14 33.88 REMARK 500 2 ASN A 29 -143.12 -104.87 REMARK 500 2 GLU A 30 -75.59 -140.61 REMARK 500 2 GLN A 40 100.77 -57.95 REMARK 500 2 PHE A 42 123.18 -173.96 REMARK 500 2 ASP A 44 -89.46 174.05 REMARK 500 3 PHE A 14 -146.33 -107.56 REMARK 500 3 LYS A 28 60.38 29.21 REMARK 500 3 ASN A 29 -142.71 -104.66 REMARK 500 3 GLU A 30 -75.89 -140.50 REMARK 500 3 PHE A 42 81.86 177.50 REMARK 500 3 ASP A 43 -80.69 177.73 REMARK 500 3 ASP A 44 105.21 -172.12 REMARK 500 4 PHE A 14 -144.79 -106.61 REMARK 500 4 LYS A 28 60.36 31.76 REMARK 500 4 ASN A 29 -147.69 -106.05 REMARK 500 4 GLU A 30 -76.22 -134.28 REMARK 500 4 PHE A 42 51.24 -176.63 REMARK 500 4 ASP A 43 -74.97 -170.83 REMARK 500 4 ASP A 44 -73.35 -142.75 REMARK 500 5 GLU A 2 5.73 85.84 REMARK 500 5 PHE A 14 -146.19 -108.01 REMARK 500 5 LYS A 28 63.22 27.86 REMARK 500 5 ASN A 29 -148.17 -109.80 REMARK 500 5 GLU A 30 -71.01 -142.98 REMARK 500 5 ASP A 43 -148.86 55.06 REMARK 500 5 ASP A 44 59.43 34.09 REMARK 500 6 PHE A 14 -147.16 -108.23 REMARK 500 6 LYS A 28 60.69 32.00 REMARK 500 6 ASN A 29 -148.91 -105.53 REMARK 500 6 GLU A 30 -72.62 -141.88 REMARK 500 6 PHE A 42 111.52 -174.06 REMARK 500 6 ASP A 43 -44.49 -174.92 REMARK 500 7 PHE A 14 -147.37 -107.03 REMARK 500 7 LYS A 28 55.19 32.64 REMARK 500 7 ASN A 29 -142.03 -100.20 REMARK 500 7 GLU A 30 -78.56 -143.60 REMARK 500 7 GLN A 40 101.01 -43.29 REMARK 500 7 PHE A 42 139.86 179.50 REMARK 500 7 ASP A 43 79.92 49.15 REMARK 500 7 ASP A 44 32.79 -148.09 REMARK 500 8 PHE A 14 -145.17 -107.25 REMARK 500 REMARK 500 THIS ENTRY HAS 141 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DV0 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF WILD TYPE HHR23A UBA(2) DOMAIN DBREF 1F4I A 1 45 UNP P54725 RD23A_HUMAN 319 363 SEQADV 1F4I GLU A 15 UNP P54725 PRO 333 ENGINEERED MUTATION SEQRES 1 A 45 GLN GLU LYS GLU ALA ILE GLU ARG LEU LYS ALA LEU GLY SEQRES 2 A 45 PHE GLU GLU SER LEU VAL ILE GLN ALA TYR PHE ALA CYS SEQRES 3 A 45 GLU LYS ASN GLU ASN LEU ALA ALA ASN PHE LEU LEU SER SEQRES 4 A 45 GLN ASN PHE ASP ASP GLU HELIX 1 1 GLU A 2 LEU A 12 1 11 HELIX 2 2 LEU A 18 ALA A 25 1 8 HELIX 3 3 LEU A 32 SER A 39 1 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000