PDB Short entry for 1F4I
HEADER    DNA BINDING PROTEIN,TRANSCRIPTION       07-JUN-00   1F4I              
TITLE     SOLUTION STRUCTURE OF THE HHR23A UBA(2) MUTANT P333E,                 
TITLE    2 DEFICIENT IN BINDING THE HIV-1 ACCESSORY PROTEIN VPR                 
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: UV EXCISION REPAIR PROTEIN PROTEIN RAD23 HOMOLOG           
COMPND   3 A;                                                                   
COMPND   4 CHAIN: A;                                                            
COMPND   5 FRAGMENT: C-TERMINAL UBA DOMAIN;                                     
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED.              
SOURCE   4 THE SEQUENCE OF THIS PEPTIDE NATURALLY OCCURS IN HUMANS              
SOURCE   5 (HOMO SAPIENS).                                                      
KEYWDS    ALPHA HELICAL BUNDLE, DNA BINDING PROTEIN,TRANSCRIPTION               
EXPDTA    SOLUTION NMR                                                          
NUMMDL    21                                                                    
AUTHOR    E.S.WITHERS-WARD,T.D.MUELLER,I.S.CHEN,J.FEIGON                        
REVDAT   2   24-FEB-09 1F4I    1       VERSN                                    
REVDAT   1   20-DEC-00 1F4I    0                                                
JRNL        AUTH   E.S.WITHERS-WARD,T.D.MUELLER,I.S.CHEN,J.FEIGON               
JRNL        TITL   BIOCHEMICAL AND STRUCTURAL ANALYSIS OF THE                   
JRNL        TITL 2 INTERACTION BETWEEN THE UBA(2) DOMAIN OF THE DNA             
JRNL        TITL 3 REPAIR PROTEIN HHR23A AND HIV-1 VPR.                         
JRNL        REF    BIOCHEMISTRY                  V.  39 14103 2000              
JRNL        REFN                   ISSN 0006-2960                               
JRNL        PMID   11087358                                                     
JRNL        DOI    10.1021/BI0017071                                            
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   T.DIECKMANN,E.S.WITHERS-WARD,M.A.JAROSINSKI,                 
REMARK   1  AUTH 2 C.F.LIU,I.S.Y.CHEN,J.FEIGON                                  
REMARK   1  TITL   STRUCTURE OF A HUMAN DNA REPAIR PROTEIN UBA DOMAIN           
REMARK   1  TITL 2 THAT INTERACTS WITH HIV-1 VPR                                
REMARK   1  REF    NAT.STRUCT.BIOL.              V.   5  1042 1998              
REMARK   1  REFN                   ISSN 1072-8368                               
REMARK   1  DOI    10.1038/4220                                                 
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR 3.1                                           
REMARK   3   AUTHORS     : BRUNGER                                              
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: TOTAL NUMBER OF RESTRAINTS 826,  204      
REMARK   3  INTRARESIDUAL, 182 SEQUENTIAL, 226 MEDIUM RANGE (|I-J|<5), 214      
REMARK   3  LONG RANGE (|I-J|>=5)                                               
REMARK   4                                                                      
REMARK   4 1F4I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-00.                  
REMARK 100 THE RCSB ID CODE IS RCSB011232.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 300                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : 50MM SODIUM PHOSPHATE, 150MM       
REMARK 210                                   SODIUM CHLORIDE                    
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 2MM UBA(2) DOMAIN MUTANT           
REMARK 210                                   P333E; 50MM PHOSPHATE BUFFER,      
REMARK 210                                   150MM SODIUM CHLORIDE; 90%         
REMARK 210                                   H2O, 10% D2O                       
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D NOESY                           
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ, 500 MHZ                   
REMARK 210  SPECTROMETER MODEL             : DRX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : XWINNMR 2.6, XEASY 1.3.10, X-      
REMARK 210                                   PLOR 3.1                           
REMARK 210   METHOD USED                   : SIMULATED ANNEALING,               
REMARK 210                                   DISTANCE GEOMETRY                  
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 21                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 12                  
REMARK 210                                                                      
REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D              
REMARK 210  HOMONUCLEAR TECHNIQUES                                              
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 PHE A  14     -140.68   -109.15                                   
REMARK 500  1 GLU A  16      -19.30    -48.10                                   
REMARK 500  1 LYS A  28       58.56     37.86                                   
REMARK 500  1 ASN A  29     -146.95   -106.85                                   
REMARK 500  1 GLU A  30      -76.46   -135.23                                   
REMARK 500  1 PHE A  42      110.46   -173.71                                   
REMARK 500  1 ASP A  43     -149.65   -110.69                                   
REMARK 500  2 PHE A  14     -144.82   -108.42                                   
REMARK 500  2 LYS A  28       59.14     33.88                                   
REMARK 500  2 ASN A  29     -143.12   -104.87                                   
REMARK 500  2 GLU A  30      -75.59   -140.61                                   
REMARK 500  2 GLN A  40      100.77    -57.95                                   
REMARK 500  2 PHE A  42      123.18   -173.96                                   
REMARK 500  2 ASP A  44      -89.46    174.05                                   
REMARK 500  3 PHE A  14     -146.33   -107.56                                   
REMARK 500  3 LYS A  28       60.38     29.21                                   
REMARK 500  3 ASN A  29     -142.71   -104.66                                   
REMARK 500  3 GLU A  30      -75.89   -140.50                                   
REMARK 500  3 PHE A  42       81.86    177.50                                   
REMARK 500  3 ASP A  43      -80.69    177.73                                   
REMARK 500  3 ASP A  44      105.21   -172.12                                   
REMARK 500  4 PHE A  14     -144.79   -106.61                                   
REMARK 500  4 LYS A  28       60.36     31.76                                   
REMARK 500  4 ASN A  29     -147.69   -106.05                                   
REMARK 500  4 GLU A  30      -76.22   -134.28                                   
REMARK 500  4 PHE A  42       51.24   -176.63                                   
REMARK 500  4 ASP A  43      -74.97   -170.83                                   
REMARK 500  4 ASP A  44      -73.35   -142.75                                   
REMARK 500  5 GLU A   2        5.73     85.84                                   
REMARK 500  5 PHE A  14     -146.19   -108.01                                   
REMARK 500  5 LYS A  28       63.22     27.86                                   
REMARK 500  5 ASN A  29     -148.17   -109.80                                   
REMARK 500  5 GLU A  30      -71.01   -142.98                                   
REMARK 500  5 ASP A  43     -148.86     55.06                                   
REMARK 500  5 ASP A  44       59.43     34.09                                   
REMARK 500  6 PHE A  14     -147.16   -108.23                                   
REMARK 500  6 LYS A  28       60.69     32.00                                   
REMARK 500  6 ASN A  29     -148.91   -105.53                                   
REMARK 500  6 GLU A  30      -72.62   -141.88                                   
REMARK 500  6 PHE A  42      111.52   -174.06                                   
REMARK 500  6 ASP A  43      -44.49   -174.92                                   
REMARK 500  7 PHE A  14     -147.37   -107.03                                   
REMARK 500  7 LYS A  28       55.19     32.64                                   
REMARK 500  7 ASN A  29     -142.03   -100.20                                   
REMARK 500  7 GLU A  30      -78.56   -143.60                                   
REMARK 500  7 GLN A  40      101.01    -43.29                                   
REMARK 500  7 PHE A  42      139.86    179.50                                   
REMARK 500  7 ASP A  43       79.92     49.15                                   
REMARK 500  7 ASP A  44       32.79   -148.09                                   
REMARK 500  8 PHE A  14     -145.17   -107.25                                   
REMARK 500  8 LYS A  28       58.60     28.75                                   
REMARK 500  8 ASN A  29     -162.14   -107.59                                   
REMARK 500  8 GLU A  30      -74.83   -129.81                                   
REMARK 500  8 GLN A  40       96.09    -63.28                                   
REMARK 500  8 PHE A  42      125.54   -173.21                                   
REMARK 500  9 PHE A  14     -145.16   -107.98                                   
REMARK 500  9 LYS A  28       52.91     31.86                                   
REMARK 500  9 ASN A  29     -100.88    -89.60                                   
REMARK 500  9 GLU A  30      -81.32    170.40                                   
REMARK 500  9 PHE A  42       26.82   -172.24                                   
REMARK 500  9 ASP A  43      -90.59   -171.24                                   
REMARK 500  9 ASP A  44       91.47     53.76                                   
REMARK 500 10 PHE A  14     -145.36   -112.22                                   
REMARK 500 10 LYS A  28       58.19     30.64                                   
REMARK 500 10 ASN A  29     -138.72   -103.00                                   
REMARK 500 10 GLU A  30      -70.88   -149.54                                   
REMARK 500 10 PHE A  42       31.64   -173.94                                   
REMARK 500 10 ASP A  44       50.49   -157.35                                   
REMARK 500 11 PHE A  14     -145.11   -109.49                                   
REMARK 500 11 LYS A  28       50.97     33.99                                   
REMARK 500 11 ASN A  29     -144.08    -96.61                                   
REMARK 500 11 GLU A  30      -72.85   -146.13                                   
REMARK 500 11 PHE A  42       84.96   -175.74                                   
REMARK 500 12 GLU A   2       -5.99     84.18                                   
REMARK 500 12 PHE A  14     -145.30   -106.63                                   
REMARK 500 12 LYS A  28       54.79     27.49                                   
REMARK 500 12 GLU A  30      -65.52     91.28                                   
REMARK 500 12 PHE A  42      130.04   -176.78                                   
REMARK 500 12 ASP A  43       -3.39     75.51                                   
REMARK 500 13 PHE A  14     -146.08   -109.54                                   
REMARK 500 13 GLU A  16      -19.68    -49.49                                   
REMARK 500 13 LYS A  28       63.31     30.44                                   
REMARK 500 13 GLU A  30      -73.30   -119.67                                   
REMARK 500 13 GLN A  40       92.94     38.04                                   
REMARK 500 13 PHE A  42       67.90   -178.88                                   
REMARK 500 13 ASP A  43       32.38   -169.62                                   
REMARK 500 14 PHE A  14     -144.09   -108.12                                   
REMARK 500 14 LYS A  28       53.19     27.47                                   
REMARK 500 14 GLU A  30      -67.75     87.91                                   
REMARK 500 14 PHE A  42       89.05   -174.94                                   
REMARK 500 14 ASP A  43      -59.72   -154.84                                   
REMARK 500 15 PHE A  14     -146.02   -107.11                                   
REMARK 500 15 LYS A  28       56.10     32.70                                   
REMARK 500 15 ASN A  29     -156.09   -102.28                                   
REMARK 500 15 GLU A  30      -79.45   -128.33                                   
REMARK 500 15 PHE A  42      154.65    179.98                                   
REMARK 500 15 ASP A  43       84.97     65.61                                   
REMARK 500 15 ASP A  44       66.01   -102.71                                   
REMARK 500 16 GLU A   2       -3.12     79.12                                   
REMARK 500 16 PHE A  14     -145.91   -109.21                                   
REMARK 500 16 GLU A  16      -30.03    -39.40                                   
REMARK 500 16 LYS A  28       57.21     30.37                                   
REMARK 500 16 ASN A  29     -149.15   -104.95                                   
REMARK 500 16 GLU A  30      -77.14   -135.46                                   
REMARK 500 16 GLN A  40       99.58    -51.52                                   
REMARK 500 16 PHE A  42       92.55   -175.74                                   
REMARK 500 16 ASP A  43      134.43   -178.54                                   
REMARK 500 16 ASP A  44       92.91   -174.97                                   
REMARK 500 17 GLU A   2       29.81   -174.02                                   
REMARK 500 17 PHE A  14     -147.48    -99.46                                   
REMARK 500 17 LYS A  28       51.21     30.86                                   
REMARK 500 17 GLU A  30      -67.70     89.83                                   
REMARK 500 17 GLN A  40     -169.19    -75.37                                   
REMARK 500 17 PHE A  42      158.63    174.05                                   
REMARK 500 18 GLU A   2      -12.69     84.20                                   
REMARK 500 18 PHE A  14     -145.98   -109.46                                   
REMARK 500 18 GLU A  27       61.06     63.12                                   
REMARK 500 18 LYS A  28       42.67     39.04                                   
REMARK 500 18 ASN A  29     -151.99    -92.35                                   
REMARK 500 18 GLU A  30      -70.78   -142.86                                   
REMARK 500 18 GLN A  40      102.23    -36.64                                   
REMARK 500 18 PHE A  42       60.27   -169.81                                   
REMARK 500 18 ASP A  43     -160.94   -164.06                                   
REMARK 500 18 ASP A  44       49.87    -98.59                                   
REMARK 500 19 PHE A  14     -143.14   -108.58                                   
REMARK 500 19 LYS A  28       57.88     34.36                                   
REMARK 500 19 ASN A  29     -160.26   -103.46                                   
REMARK 500 19 GLU A  30      -76.36   -125.37                                   
REMARK 500 19 PHE A  42      146.74   -177.12                                   
REMARK 500 20 PHE A  14     -142.79   -106.09                                   
REMARK 500 20 LYS A  28       56.20     34.18                                   
REMARK 500 20 ASN A  29     -144.58   -103.03                                   
REMARK 500 20 GLU A  30      -74.73   -143.05                                   
REMARK 500 20 PHE A  42      130.38   -178.20                                   
REMARK 500 20 ASP A  44      111.27    172.41                                   
REMARK 500 21 PHE A  14     -145.78   -108.42                                   
REMARK 500 21 LYS A  28       54.30     33.93                                   
REMARK 500 21 ASN A  29     -145.95   -100.65                                   
REMARK 500 21 GLU A  30      -71.48   -145.79                                   
REMARK 500 21 PHE A  42      123.96   -177.64                                   
REMARK 500 21 ASP A  44      -48.92   -133.53                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1DV0   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF WILD TYPE HHR23A UBA(2) DOMAIN                 
DBREF  1F4I A    1    45  UNP    P54725   RD23A_HUMAN    319    363             
SEQADV 1F4I GLU A   15  UNP  P54725    PRO   333 ENGINEERED                     
SEQRES   1 A   45  GLN GLU LYS GLU ALA ILE GLU ARG LEU LYS ALA LEU GLY          
SEQRES   2 A   45  PHE GLU GLU SER LEU VAL ILE GLN ALA TYR PHE ALA CYS          
SEQRES   3 A   45  GLU LYS ASN GLU ASN LEU ALA ALA ASN PHE LEU LEU SER          
SEQRES   4 A   45  GLN ASN PHE ASP ASP GLU                                      
HELIX    1   1 GLU A    2  LEU A   12  1                                  11    
HELIX    2   2 LEU A   18  ALA A   25  1                                   8    
HELIX    3   3 LEU A   32  SER A   39  1                                   8    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000