PDB Short entry for 1FAR HEADER SERINE/THREONINE PROTEIN KINASE 05-SEP-96 1FAR TITLE RAF-1 CYSTEINE RICH DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAF-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYSTEINE-RICH DOMAIN; COMPND 5 EC: 2.7.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS TRANSFERASE, SERINE/THREONINE-PROTEIN KINASE, PROTO-ONCOGENE, ZINC, KEYWDS 2 ATP-BINDING, PHORBOL-ESTER BINDING, SERINE-THREONINE PROTEIN KINASE KEYWDS 3 COMPLEX EXPDTA SOLUTION NMR AUTHOR H.R.MOTT,S.L.CAMPBELL REVDAT 3 23-FEB-22 1FAR 1 REMARK LINK REVDAT 2 24-FEB-09 1FAR 1 VERSN REVDAT 1 27-JAN-97 1FAR 0 JRNL AUTH H.R.MOTT,J.W.CARPENTER,S.ZHONG,S.GHOSH,R.M.BELL,S.L.CAMPBELL JRNL TITL THE SOLUTION STRUCTURE OF THE RAF-1 CYSTEINE-RICH DOMAIN: A JRNL TITL 2 NOVEL RAS AND PHOSPHOLIPID BINDING SITE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 93 8312 1996 JRNL REFN ISSN 0027-8424 JRNL PMID 8710867 JRNL DOI 10.1073/PNAS.93.16.8312 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173210. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 170 CB - CG - CD2 ANGL. DEV. = 16.2 DEGREES REMARK 500 TYR A 170 CD1 - CG - CD2 ANGL. DEV. = -65.6 DEGREES REMARK 500 TYR A 170 CB - CG - CD1 ANGL. DEV. = -10.1 DEGREES REMARK 500 TYR A 170 CG - CD1 - CE1 ANGL. DEV. = -48.1 DEGREES REMARK 500 TYR A 170 CG - CD2 - CE2 ANGL. DEV. = -46.2 DEGREES REMARK 500 TYR A 170 CD1 - CE1 - CZ ANGL. DEV. = -44.5 DEGREES REMARK 500 TYR A 170 CE1 - CZ - OH ANGL. DEV. = 16.9 DEGREES REMARK 500 TYR A 170 CE1 - CZ - CE2 ANGL. DEV. = -68.5 DEGREES REMARK 500 TYR A 170 CZ - CE2 - CD2 ANGL. DEV. = -46.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 138 -161.83 -70.05 REMARK 500 ARG A 143 109.76 -56.39 REMARK 500 LYS A 148 -81.62 -117.25 REMARK 500 CYS A 155 -84.51 -88.61 REMARK 500 GLN A 156 -17.27 166.01 REMARK 500 PHE A 158 172.21 -42.68 REMARK 500 LEU A 160 -169.33 -118.92 REMARK 500 ASN A 161 99.25 -54.88 REMARK 500 HIS A 173 -158.20 -94.18 REMARK 500 PRO A 181 -87.65 -74.76 REMARK 500 MET A 183 175.50 -58.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 143 0.23 SIDE CHAIN REMARK 500 ARG A 164 0.31 SIDE CHAIN REMARK 500 TYR A 170 0.45 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 152 SG REMARK 620 2 CYS A 155 SG 102.4 REMARK 620 3 HIS A 173 ND1 93.9 83.5 REMARK 620 4 CYS A 176 SG 97.5 122.3 148.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 139 ND1 REMARK 620 2 CYS A 165 SG 99.9 REMARK 620 3 CYS A 168 SG 170.4 87.5 REMARK 620 4 CYS A 184 SG 88.3 156.8 87.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZN1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ZINC-COORDINATION RESIDUES. REMARK 800 REMARK 800 SITE_IDENTIFIER: ZN2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ZINC-COORDINATION RESIDUES. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FAQ RELATED DB: PDB DBREF 1FAR A 136 187 UNP P04049 RAF1_HUMAN 136 187 SEQRES 1 A 52 LEU THR THR HIS ASN PHE ALA ARG LYS THR PHE LEU LYS SEQRES 2 A 52 LEU ALA PHE CYS ASP ILE CYS GLN LYS PHE LEU LEU ASN SEQRES 3 A 52 GLY PHE ARG CYS GLN THR CYS GLY TYR LYS PHE HIS GLU SEQRES 4 A 52 HIS CYS SER THR LYS VAL PRO THR MET CYS VAL ASP TRP HET ZN A 1 1 HET ZN A 2 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 GLU A 174 CYS A 176 5 3 SHEET 1 A 3 ALA A 142 LYS A 144 0 SHEET 2 A 3 GLY A 162 CYS A 165 -1 N ARG A 164 O ALA A 142 SHEET 3 A 3 TYR A 170 PHE A 172 -1 N PHE A 172 O PHE A 163 LINK ZN ZN A 1 SG CYS A 152 1555 1555 2.36 LINK ZN ZN A 1 SG CYS A 155 1555 1555 2.39 LINK ZN ZN A 1 ND1 HIS A 173 1555 1555 2.14 LINK ZN ZN A 1 SG CYS A 176 1555 1555 2.48 LINK ZN ZN A 2 ND1 HIS A 139 1555 1555 2.17 LINK ZN ZN A 2 SG CYS A 165 1555 1555 2.38 LINK ZN ZN A 2 SG CYS A 168 1555 1555 2.46 LINK ZN ZN A 2 SG CYS A 184 1555 1555 2.36 SITE 1 ZN1 4 CYS A 152 CYS A 155 HIS A 173 CYS A 176 SITE 1 ZN2 4 HIS A 139 CYS A 165 CYS A 168 CYS A 184 SITE 1 AC1 4 CYS A 152 CYS A 155 HIS A 173 CYS A 176 SITE 1 AC2 5 HIS A 139 CYS A 165 CYS A 168 TYR A 170 SITE 2 AC2 5 CYS A 184 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000