PDB Short entry for 1FBV HEADER LIGASE 17-JUL-00 1FBV TITLE STRUCTURE OF A CBL-UBCH7 COMPLEX: RING DOMAIN FUNCTION IN UBIQUITIN- TITLE 2 PROTEIN LIGASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL TRANSDUCTION PROTEIN CBL; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ZAP-70 PEPTIDE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E12-18 KDA UBCH7; COMPND 11 CHAIN: C; COMPND 12 EC: 6.3.2.19; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED; SOURCE 10 MOL_ID: 3; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CBL, UBCH7, ZAP-70, E2, UBIQUITIN, E3, PHOSPHORYLATION, TYROSINE KEYWDS 2 KINASE, UBIQUITINATION, PROTEIN DEGRADATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ZHENG,P.WANG,P.D.JEFFREY,N.P.PAVLETICH REVDAT 3 04-OCT-17 1FBV 1 REMARK REVDAT 2 24-FEB-09 1FBV 1 VERSN REVDAT 1 30-AUG-00 1FBV 0 JRNL AUTH N.ZHENG,P.WANG,P.D.JEFFREY,N.P.PAVLETICH JRNL TITL STRUCTURE OF A C-CBL-UBCH7 COMPLEX: RING DOMAIN FUNCTION IN JRNL TITL 2 UBIQUITIN-PROTEIN LIGASES. JRNL REF CELL(CAMBRIDGE,MASS.) V. 102 533 2000 JRNL REFN ISSN 0092-8674 JRNL PMID 10966114 JRNL DOI 10.1016/S0092-8674(00)00057-X REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 156681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4366 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1000011462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 8 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, AMMONIUM SULFATE,, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 109.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 109.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 109.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 109.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 109.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 109.50000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 109.50000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 109.50000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 109.50000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 109.50000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 109.50000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 109.50000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 109.50000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 109.50000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 109.50000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 109.50000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 109.50000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 164.25000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 54.75000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 54.75000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 164.25000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 164.25000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 164.25000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 54.75000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 54.75000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 164.25000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 54.75000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 164.25000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 54.75000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 164.25000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 54.75000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 54.75000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 54.75000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 164.25000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 54.75000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 164.25000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 164.25000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 164.25000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 54.75000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 54.75000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 164.25000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 164.25000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 54.75000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 54.75000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 54.75000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 54.75000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 164.25000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 54.75000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 164.25000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 54.75000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 164.25000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 164.25000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 164.25000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1001 REMARK 465 ALA C 1002 REMARK 465 ALA C 1003 REMARK 465 GLY C 1148 REMARK 465 GLU C 1149 REMARK 465 LYS C 1150 REMARK 465 ARG C 1151 REMARK 465 PRO C 1152 REMARK 465 VAL C 1153 REMARK 465 ASP C 1154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP C1042 CG OD1 OD2 REMARK 470 ASN C1043 CG OD1 ND2 REMARK 470 HIS C1119 CG ND1 CD2 CE1 NE2 REMARK 470 ASP C1124 CG OD1 OD2 REMARK 470 GLU C1127 CG CD OE1 OE2 REMARK 470 LYS C1134 CG CD CE NZ REMARK 470 LYS C1138 CG CD CE NZ REMARK 470 ASN C1139 CG OD1 ND2 REMARK 470 GLU C1142 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD GLU C 1081 NH2 ARG C 1122 1.39 REMARK 500 OE2 GLU C 1081 NH1 ARG C 1122 1.51 REMARK 500 OE2 GLU C 1081 NH2 ARG C 1122 1.63 REMARK 500 OE2 GLU C 1081 CZ ARG C 1122 1.73 REMARK 500 OE1 GLU C 1081 NH2 ARG C 1122 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 69 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 PRO A 81 C - N - CA ANGL. DEV. = 11.1 DEGREES REMARK 500 GLY A 136 N - CA - C ANGL. DEV. = -15.9 DEGREES REMARK 500 GLU A 394 N - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 76 59.49 34.87 REMARK 500 PRO A 81 -62.29 0.67 REMARK 500 TYR A 83 62.14 72.49 REMARK 500 LEU A 85 0.38 -63.07 REMARK 500 GLU A 135 -76.92 -53.68 REMARK 500 LYS A 137 -98.85 -111.10 REMARK 500 GLU A 142 -98.97 -60.10 REMARK 500 GLU A 143 126.34 151.03 REMARK 500 PHE A 169 57.93 -115.07 REMARK 500 LYS A 192 4.77 -54.91 REMARK 500 SER A 216 -56.89 -9.44 REMARK 500 SER A 217 -156.24 -158.40 REMARK 500 ASN A 233 25.20 -143.77 REMARK 500 ASP A 234 8.65 53.05 REMARK 500 LEU A 254 -68.35 -21.25 REMARK 500 LYS A 283 4.68 -68.95 REMARK 500 ASN A 321 59.93 31.14 REMARK 500 LYS A 322 134.55 -171.52 REMARK 500 LEU A 352 26.47 -143.31 REMARK 500 GLU A 354 163.81 65.91 REMARK 500 PRO A 357 101.22 -59.14 REMARK 500 GLN A 358 -168.43 37.78 REMARK 500 SER A 376 -103.35 1.21 REMARK 500 THR A 377 -37.52 64.64 REMARK 500 CYS A 396 -86.15 -73.56 REMARK 500 MET A 400 161.62 175.96 REMARK 500 ARG A 420 53.35 11.57 REMARK 500 LYS A 424 -68.36 63.06 REMARK 500 ASP B 5 -143.39 14.89 REMARK 500 ARG C1005 -8.40 -148.57 REMARK 500 ASN C1021 -28.05 78.62 REMARK 500 ASN C1024 100.31 45.39 REMARK 500 VAL C1027 119.43 156.63 REMARK 500 GLU C1029 22.35 -70.26 REMARK 500 ASN C1031 -57.65 -136.29 REMARK 500 LEU C1032 -14.62 64.24 REMARK 500 PRO C1041 -145.88 -55.36 REMARK 500 ASP C1042 -89.60 -170.51 REMARK 500 ASN C1043 -71.96 -48.53 REMARK 500 PRO C1044 -167.61 -55.53 REMARK 500 PRO C1045 -84.44 -56.69 REMARK 500 TYR C1046 131.87 10.47 REMARK 500 LYS C1048 -145.38 36.92 REMARK 500 GLU C1060 33.58 -88.24 REMARK 500 LYS C1073 163.25 4.88 REMARK 500 ILE C1074 176.76 177.52 REMARK 500 TYR C1075 -101.22 -99.27 REMARK 500 HIS C1076 142.69 49.60 REMARK 500 PRO C1077 -71.94 -54.26 REMARK 500 GLN C1084 151.96 -48.32 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 114 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 384 SG REMARK 620 2 CYS A 401 SG 99.9 REMARK 620 3 CYS A 404 SG 95.6 88.7 REMARK 620 4 CYS A 381 SG 119.8 120.5 125.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 398 ND1 REMARK 620 2 CYS A 396 SG 85.9 REMARK 620 3 CYS A 419 SG 106.4 100.4 REMARK 620 4 CYS A 416 SG 116.4 132.5 111.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2005 DBREF 1FBV A 47 434 UNP P22681 CBL_HUMAN 47 434 DBREF 1FBV C 1001 1154 UNP P68036 UB2L3_HUMAN 1 154 DBREF 1FBV B 4 12 PDB 1FBV 1FBV 4 12 SEQRES 1 A 388 PRO PRO GLY THR VAL ASP LYS LYS MET VAL GLU LYS CYS SEQRES 2 A 388 TRP LYS LEU MET ASP LYS VAL VAL ARG LEU CYS GLN ASN SEQRES 3 A 388 PRO LYS LEU ALA LEU LYS ASN SER PRO PRO TYR ILE LEU SEQRES 4 A 388 ASP LEU LEU PRO ASP THR TYR GLN HIS LEU ARG THR ILE SEQRES 5 A 388 LEU SER ARG TYR GLU GLY LYS MET GLU THR LEU GLY GLU SEQRES 6 A 388 ASN GLU TYR PHE ARG VAL PHE MET GLU ASN LEU MET LYS SEQRES 7 A 388 LYS THR LYS GLN THR ILE SER LEU PHE LYS GLU GLY LYS SEQRES 8 A 388 GLU ARG MET TYR GLU GLU ASN SER GLN PRO ARG ARG ASN SEQRES 9 A 388 LEU THR LYS LEU SER LEU ILE PHE SER HIS MET LEU ALA SEQRES 10 A 388 GLU LEU LYS GLY ILE PHE PRO SER GLY LEU PHE GLN GLY SEQRES 11 A 388 ASP THR PHE ARG ILE THR LYS ALA ASP ALA ALA GLU PHE SEQRES 12 A 388 TRP ARG LYS ALA PHE GLY GLU LYS THR ILE VAL PRO TRP SEQRES 13 A 388 LYS SER PHE ARG GLN ALA LEU HIS GLU VAL HIS PRO ILE SEQRES 14 A 388 SER SER GLY LEU GLU ALA MET ALA LEU LYS SER THR ILE SEQRES 15 A 388 ASP LEU THR CYS ASN ASP TYR ILE SER VAL PHE GLU PHE SEQRES 16 A 388 ASP ILE PHE THR ARG LEU PHE GLN PRO TRP SER SER LEU SEQRES 17 A 388 LEU ARG ASN TRP ASN SER LEU ALA VAL THR HIS PRO GLY SEQRES 18 A 388 TYR MET ALA PHE LEU THR TYR ASP GLU VAL LYS ALA ARG SEQRES 19 A 388 LEU GLN LYS PHE ILE HIS LYS PRO GLY SER TYR ILE PHE SEQRES 20 A 388 ARG LEU SER CYS THR ARG LEU GLY GLN TRP ALA ILE GLY SEQRES 21 A 388 TYR VAL THR ALA ASP GLY ASN ILE LEU GLN THR ILE PRO SEQRES 22 A 388 HIS ASN LYS PRO LEU PHE GLN ALA LEU ILE ASP GLY PHE SEQRES 23 A 388 ARG GLU GLY PHE TYR LEU PHE PRO ASP GLY ARG ASN GLN SEQRES 24 A 388 ASN PRO ASP LEU THR GLY LEU CYS GLU PRO THR PRO GLN SEQRES 25 A 388 ASP HIS ILE LYS VAL THR GLN GLU GLN TYR GLU LEU TYR SEQRES 26 A 388 CYS GLU MET GLY SER THR PHE GLN LEU CYS LYS ILE CYS SEQRES 27 A 388 ALA GLU ASN ASP LYS ASP VAL LYS ILE GLU PRO CYS GLY SEQRES 28 A 388 HIS LEU MET CYS THR SER CYS LEU THR SER TRP GLN GLU SEQRES 29 A 388 SER GLU GLY GLN GLY CYS PRO PHE CYS ARG CYS GLU ILE SEQRES 30 A 388 LYS GLY THR GLU PRO ILE VAL VAL ASP PRO PHE SEQRES 1 B 9 SER ASP GLY PTR THR PRO GLU PRO ALA SEQRES 1 C 154 MET ALA ALA SER ARG ARG LEU MET LYS GLU LEU GLU GLU SEQRES 2 C 154 ILE ARG LYS CYS GLY MET LYS ASN PHE ARG ASN ILE GLN SEQRES 3 C 154 VAL ASP GLU ALA ASN LEU LEU THR TRP GLN GLY LEU ILE SEQRES 4 C 154 VAL PRO ASP ASN PRO PRO TYR ASP LYS GLY ALA PHE ARG SEQRES 5 C 154 ILE GLU ILE ASN PHE PRO ALA GLU TYR PRO PHE LYS PRO SEQRES 6 C 154 PRO LYS ILE THR PHE LYS THR LYS ILE TYR HIS PRO ASN SEQRES 7 C 154 ILE ASP GLU LYS GLY GLN VAL CYS LEU PRO VAL ILE SER SEQRES 8 C 154 ALA GLU ASN TRP LYS PRO ALA THR LYS THR ASP GLN VAL SEQRES 9 C 154 ILE GLN SER LEU ILE ALA LEU VAL ASN ASP PRO GLN PRO SEQRES 10 C 154 GLU HIS PRO LEU ARG ALA ASP LEU ALA GLU GLU TYR SER SEQRES 11 C 154 LYS ASP ARG LYS LYS PHE CYS LYS ASN ALA GLU GLU PHE SEQRES 12 C 154 THR LYS LYS TYR GLY GLU LYS ARG PRO VAL ASP MODRES 1FBV PTR B 7 TYR O-PHOSPHOTYROSINE HET PTR B 7 16 HET ZN A1001 1 HET ZN A1002 1 HET SO4 A2001 5 HET SO4 A2002 5 HET SO4 A2003 5 HET SO4 A2004 5 HET SO4 A2005 5 HETNAM PTR O-PHOSPHOTYROSINE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 PTR C9 H12 N O6 P FORMUL 4 ZN 2(ZN 2+) FORMUL 6 SO4 5(O4 S 2-) HELIX 1 1 ASP A 52 GLN A 71 1 20 HELIX 2 2 ASN A 72 ALA A 76 5 5 HELIX 3 3 TYR A 83 TYR A 102 1 20 HELIX 4 4 LYS A 105 GLU A 111 1 7 HELIX 5 5 ASN A 112 GLY A 136 1 25 HELIX 6 6 LYS A 137 TYR A 141 5 5 HELIX 7 7 SER A 145 PHE A 169 1 25 HELIX 8 8 PRO A 170 LEU A 173 5 4 HELIX 9 9 GLN A 175 PHE A 179 5 5 HELIX 10 10 LYS A 183 GLY A 195 1 13 HELIX 11 11 TRP A 202 HIS A 213 1 12 HELIX 12 12 SER A 217 ASP A 229 1 13 HELIX 13 13 VAL A 238 PHE A 248 1 11 HELIX 14 14 PRO A 250 SER A 252 5 3 HELIX 15 15 SER A 253 ALA A 262 1 10 HELIX 16 16 THR A 273 GLN A 282 1 10 HELIX 17 17 LYS A 283 ILE A 285 5 3 HELIX 18 18 PRO A 323 GLU A 334 1 12 HELIX 19 19 THR A 364 GLU A 373 1 10 HELIX 20 20 CYS A 401 SER A 411 1 11 HELIX 21 21 ARG C 1006 CYS C 1017 1 12 HELIX 22 22 LEU C 1087 SER C 1091 5 5 HELIX 23 23 LYS C 1100 ILE C 1105 1 6 HELIX 24 24 LEU C 1108 ASN C 1113 1 6 HELIX 25 25 ARG C 1122 GLU C 1127 1 6 HELIX 26 26 ASP C 1132 ASN C 1139 1 8 HELIX 27 27 GLU C 1142 TYR C 1147 1 6 SHEET 1 A 2 ILE A 199 PRO A 201 0 SHEET 2 A 2 TYR A 235 SER A 237 -1 N ILE A 236 O VAL A 200 SHEET 1 B 4 ILE A 314 THR A 317 0 SHEET 2 B 4 TRP A 303 VAL A 308 -1 N ILE A 305 O THR A 317 SHEET 3 B 4 SER A 290 LEU A 295 -1 O SER A 290 N VAL A 308 SHEET 4 B 4 PHE A 339 PRO A 340 1 O PHE A 339 N TYR A 291 SHEET 1 C 2 VAL A 391 LYS A 392 0 SHEET 2 C 2 LEU A 399 MET A 400 -1 O MET A 400 N VAL A 391 SHEET 1 D 4 PHE C1022 GLN C1026 0 SHEET 2 D 4 THR C1034 ILE C1039 -1 O GLN C1036 N GLN C1026 SHEET 3 D 4 ARG C1052 ASN C1056 -1 N ILE C1053 O GLY C1037 SHEET 4 D 4 LYS C1067 PHE C1070 -1 N LYS C1067 O ASN C1056 LINK ZN ZN A1001 SG CYS A 384 1555 1555 2.28 LINK ZN ZN A1001 SG CYS A 401 1555 1555 2.34 LINK ZN ZN A1001 SG CYS A 404 1555 1555 2.33 LINK ZN ZN A1001 SG CYS A 381 1555 1555 2.24 LINK ZN ZN A1002 ND1 HIS A 398 1555 1555 2.04 LINK ZN ZN A1002 SG CYS A 396 1555 1555 2.29 LINK ZN ZN A1002 SG CYS A 419 1555 1555 2.33 LINK ZN ZN A1002 SG CYS A 416 1555 1555 2.22 LINK C GLY B 6 N PTR B 7 1555 1555 1.33 LINK C PTR B 7 N THR B 8 1555 1555 1.32 CISPEP 1 GLN A 249 PRO A 250 0 -0.36 CISPEP 2 TYR C 1061 PRO C 1062 0 -0.42 SITE 1 AC1 4 CYS A 381 CYS A 384 CYS A 401 CYS A 404 SITE 1 AC2 4 CYS A 396 HIS A 398 CYS A 416 CYS A 419 SITE 1 AC3 2 LYS A 65 ARG A 68 SITE 1 AC4 6 HIS A 213 SER A 253 LEU A 254 LEU A 255 SITE 2 AC4 6 ARG A 256 HIS A 360 SITE 1 AC5 4 ARG A 180 LYS A 183 ARG A 246 GLN A 249 SITE 1 AC6 4 GLN A 146 ARG A 149 LYS A 153 MET A 374 SITE 1 AC7 3 LYS A 382 LYS C1009 LYS C1100 CRYST1 219.000 219.000 219.000 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004566 0.00000