PDB Short entry for 1FLK HEADER APOPTOSIS 14-AUG-00 1FLK TITLE MOLECULAR BASIS FOR CD40 SIGNALING MEDIATED BY TRAF3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF RECEPTOR ASSOCIATED FACTOR 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRAF DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS TNF SIGNALING, TRAF3, CD40-BINDING PROTEIN, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR C.-Z.NI,K.WELSH,E.LEO,C.-K.CHIOU,H.WU,J.C.REED,K.R.ELY REVDAT 5 07-FEB-24 1FLK 1 REMARK REVDAT 4 13-JUL-11 1FLK 1 VERSN REVDAT 3 24-FEB-09 1FLK 1 VERSN REVDAT 2 01-APR-03 1FLK 1 JRNL REVDAT 1 18-OCT-00 1FLK 0 JRNL AUTH C.Z.NI,K.WELSH,E.LEO,C.K.CHIOU,H.WU,J.C.REED,K.R.ELY JRNL TITL MOLECULAR BASIS FOR CD40 SIGNALING MEDIATED BY TRAF3. JRNL REF PROC.NATL.ACAD.SCI.USA V. 97 10395 2000 JRNL REFN ISSN 0027-8424 JRNL PMID 10984535 JRNL DOI 10.1073/PNAS.97.19.10395 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.2 REMARK 3 NUMBER OF REFLECTIONS : 16837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 868 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3252 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-98 REMARK 200 TEMPERATURE (KELVIN) : 108.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: METHANOL, SODIUM CHLORIDE, TRIS REMARK 280 BUFFER, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.26500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.40171 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.50000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 42.26500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 24.40171 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 106.50000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 42.26500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 24.40171 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 106.50000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.80342 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 213.00000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 48.80342 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 213.00000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 48.80342 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 213.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 84.53000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 42.26500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 73.20513 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 146.41025 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -126.79500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 73.20513 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 277 REMARK 465 GLN A 278 REMARK 465 ASN A 279 REMARK 465 TRP A 280 REMARK 465 GLU A 281 REMARK 465 GLU A 282 REMARK 465 ALA A 283 REMARK 465 ASP A 284 REMARK 465 SER A 285 REMARK 465 MET A 286 REMARK 465 LYS A 287 REMARK 465 SER A 288 REMARK 465 SER A 289 REMARK 465 VAL A 290 REMARK 465 GLU A 291 REMARK 465 SER A 292 REMARK 465 LEU A 293 REMARK 465 GLN A 294 REMARK 465 ASN A 295 REMARK 465 ARG A 296 REMARK 465 VAL A 297 REMARK 465 THR A 298 REMARK 465 GLU A 299 REMARK 465 ARG B 277 REMARK 465 GLN B 278 REMARK 465 ASN B 279 REMARK 465 TRP B 280 REMARK 465 GLU B 281 REMARK 465 GLU B 282 REMARK 465 ALA B 283 REMARK 465 ASP B 284 REMARK 465 SER B 285 REMARK 465 MET B 286 REMARK 465 LYS B 287 REMARK 465 SER B 288 REMARK 465 SER B 289 REMARK 465 VAL B 290 REMARK 465 GLU B 291 REMARK 465 SER B 292 REMARK 465 LEU B 293 REMARK 465 GLN B 294 REMARK 465 ASN B 295 REMARK 465 ARG B 296 REMARK 465 VAL B 297 REMARK 465 THR B 298 REMARK 465 GLU B 299 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 333 OD1 ASP B 337 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 301 -90.19 -56.92 REMARK 500 SER A 302 26.20 -75.13 REMARK 500 SER A 306 -93.02 -69.32 REMARK 500 GLN A 309 29.43 -73.47 REMARK 500 THR A 373 91.56 -174.10 REMARK 500 MET A 390 -153.41 -150.76 REMARK 500 CYS A 391 176.23 153.18 REMARK 500 ALA A 420 -24.73 132.02 REMARK 500 LYS A 427 22.41 -145.40 REMARK 500 GLN A 437 37.27 -95.15 REMARK 500 SER A 439 -29.33 -28.53 REMARK 500 SER A 440 21.94 171.57 REMARK 500 ARG A 441 -165.47 -69.02 REMARK 500 ASP A 446 101.05 -178.12 REMARK 500 PRO A 450 150.42 -45.47 REMARK 500 PRO A 460 102.12 -48.88 REMARK 500 THR A 461 -72.18 -72.09 REMARK 500 GLU A 463 -88.29 -65.85 REMARK 500 ASN A 465 -165.84 -65.22 REMARK 500 VAL A 472 72.22 -109.76 REMARK 500 ASN A 481 61.73 -103.63 REMARK 500 TYR A 484 -47.97 -7.53 REMARK 500 ASP A 500 49.31 -75.29 REMARK 500 LEU A 501 63.12 -167.58 REMARK 500 PRO A 502 105.74 -14.16 REMARK 500 SER B 329 0.81 -66.93 REMARK 500 GLU B 346 -7.59 -59.38 REMARK 500 ALA B 348 -167.13 -66.95 REMARK 500 TYR B 350 29.57 -142.38 REMARK 500 MET B 401 43.11 -64.48 REMARK 500 ALA B 420 -40.58 170.70 REMARK 500 LYS B 427 30.23 -148.04 REMARK 500 SER B 439 -19.19 -32.13 REMARK 500 SER B 440 89.39 164.40 REMARK 500 PRO B 450 134.76 -39.21 REMARK 500 SER B 454 129.59 -31.62 REMARK 500 PRO B 460 143.66 -33.86 REMARK 500 ALA B 467 -179.74 -58.57 REMARK 500 SER B 468 81.64 -166.30 REMARK 500 GLN B 476 -6.86 -57.33 REMARK 500 LEU B 479 -60.98 -104.12 REMARK 500 THR B 483 35.25 -80.48 REMARK 500 ASP B 497 97.62 -68.07 REMARK 500 SER B 499 -79.94 -44.77 REMARK 500 ASP B 500 96.71 -65.34 REMARK 500 LEU B 501 88.47 155.50 REMARK 500 PRO B 502 150.61 -31.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 418 0.07 SIDE CHAIN REMARK 500 TYR B 350 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FLL RELATED DB: PDB REMARK 900 IN COMPLEX WITH CD40 PEPTIDE DBREF 1FLK A 277 504 UNP Q13114 TRAF3_HUMAN 341 568 DBREF 1FLK B 277 504 UNP Q13114 TRAF3_HUMAN 341 568 SEQRES 1 A 228 ARG GLN ASN TRP GLU GLU ALA ASP SER MET LYS SER SER SEQRES 2 A 228 VAL GLU SER LEU GLN ASN ARG VAL THR GLU LEU GLU SER SEQRES 3 A 228 VAL ASP LYS SER ALA GLY GLN VAL ALA ARG ASN THR GLY SEQRES 4 A 228 LEU LEU GLU SER GLN LEU SER ARG HIS ASP GLN MET LEU SEQRES 5 A 228 SER VAL HIS ASP ILE ARG LEU ALA ASP MET ASP LEU ARG SEQRES 6 A 228 PHE GLN VAL LEU GLU THR ALA SER TYR ASN GLY VAL LEU SEQRES 7 A 228 ILE TRP LYS ILE ARG ASP TYR LYS ARG ARG LYS GLN GLU SEQRES 8 A 228 ALA VAL MET GLY LYS THR LEU SER LEU TYR SER GLN PRO SEQRES 9 A 228 PHE TYR THR GLY TYR PHE GLY TYR LYS MET CYS ALA ARG SEQRES 10 A 228 VAL TYR LEU ASN GLY ASP GLY MET GLY LYS GLY THR HIS SEQRES 11 A 228 LEU SER LEU PHE PHE VAL ILE MET ARG GLY GLU TYR ASP SEQRES 12 A 228 ALA LEU LEU PRO TRP PRO PHE LYS GLN LYS VAL THR LEU SEQRES 13 A 228 MET LEU MET ASP GLN GLY SER SER ARG ARG HIS LEU GLY SEQRES 14 A 228 ASP ALA PHE LYS PRO ASP PRO ASN SER SER SER PHE LYS SEQRES 15 A 228 LYS PRO THR GLY GLU MET ASN ILE ALA SER GLY CYS PRO SEQRES 16 A 228 VAL PHE VAL ALA GLN THR VAL LEU GLU ASN GLY THR TYR SEQRES 17 A 228 ILE LYS ASP ASP THR ILE PHE ILE LYS VAL ILE VAL ASP SEQRES 18 A 228 THR SER ASP LEU PRO ASP PRO SEQRES 1 B 228 ARG GLN ASN TRP GLU GLU ALA ASP SER MET LYS SER SER SEQRES 2 B 228 VAL GLU SER LEU GLN ASN ARG VAL THR GLU LEU GLU SER SEQRES 3 B 228 VAL ASP LYS SER ALA GLY GLN VAL ALA ARG ASN THR GLY SEQRES 4 B 228 LEU LEU GLU SER GLN LEU SER ARG HIS ASP GLN MET LEU SEQRES 5 B 228 SER VAL HIS ASP ILE ARG LEU ALA ASP MET ASP LEU ARG SEQRES 6 B 228 PHE GLN VAL LEU GLU THR ALA SER TYR ASN GLY VAL LEU SEQRES 7 B 228 ILE TRP LYS ILE ARG ASP TYR LYS ARG ARG LYS GLN GLU SEQRES 8 B 228 ALA VAL MET GLY LYS THR LEU SER LEU TYR SER GLN PRO SEQRES 9 B 228 PHE TYR THR GLY TYR PHE GLY TYR LYS MET CYS ALA ARG SEQRES 10 B 228 VAL TYR LEU ASN GLY ASP GLY MET GLY LYS GLY THR HIS SEQRES 11 B 228 LEU SER LEU PHE PHE VAL ILE MET ARG GLY GLU TYR ASP SEQRES 12 B 228 ALA LEU LEU PRO TRP PRO PHE LYS GLN LYS VAL THR LEU SEQRES 13 B 228 MET LEU MET ASP GLN GLY SER SER ARG ARG HIS LEU GLY SEQRES 14 B 228 ASP ALA PHE LYS PRO ASP PRO ASN SER SER SER PHE LYS SEQRES 15 B 228 LYS PRO THR GLY GLU MET ASN ILE ALA SER GLY CYS PRO SEQRES 16 B 228 VAL PHE VAL ALA GLN THR VAL LEU GLU ASN GLY THR TYR SEQRES 17 B 228 ILE LYS ASP ASP THR ILE PHE ILE LYS VAL ILE VAL ASP SEQRES 18 B 228 THR SER ASP LEU PRO ASP PRO HELIX 1 1 GLN A 309 THR A 347 1 39 HELIX 2 2 ASP A 360 MET A 370 1 11 HELIX 3 3 ASP A 399 LYS A 403 5 5 HELIX 4 4 GLN A 476 GLU A 480 1 5 HELIX 5 5 LEU B 300 SER B 302 5 3 HELIX 6 6 VAL B 303 GLY B 308 1 6 HELIX 7 7 GLN B 309 THR B 347 1 39 HELIX 8 8 ASP B 360 MET B 370 1 11 HELIX 9 9 GLN B 476 ASN B 481 1 6 SHEET 1 A 4 VAL A 353 ARG A 359 0 SHEET 2 A 4 THR A 489 ILE A 495 -1 O ILE A 490 N ILE A 358 SHEET 3 A 4 VAL A 430 LEU A 434 -1 O THR A 431 N ILE A 495 SHEET 4 A 4 LEU A 444 PHE A 448 -1 O LEU A 444 N LEU A 434 SHEET 1 B 4 LEU A 376 TYR A 377 0 SHEET 2 B 4 ALA A 392 TYR A 395 -1 N VAL A 394 O LEU A 376 SHEET 3 B 4 HIS A 406 PHE A 411 -1 N SER A 408 O TYR A 395 SHEET 4 B 4 CYS A 470 ALA A 475 -1 O CYS A 470 N LEU A 409 SHEET 1 C 2 PHE A 381 TYR A 382 0 SHEET 2 C 2 LYS A 389 MET A 390 -1 N MET A 390 O PHE A 381 SHEET 1 D 4 TRP B 356 ARG B 359 0 SHEET 2 D 4 THR B 489 LYS B 493 -1 N ILE B 490 O ILE B 358 SHEET 3 D 4 VAL B 430 MET B 435 -1 O MET B 433 N LYS B 493 SHEET 4 D 4 LEU B 444 PHE B 448 -1 O LEU B 444 N LEU B 434 SHEET 1 E 4 SER B 468 ALA B 475 0 SHEET 2 E 4 HIS B 406 MET B 414 -1 N LEU B 407 O VAL B 474 SHEET 3 E 4 LYS B 389 TYR B 395 -1 O LYS B 389 N MET B 414 SHEET 4 E 4 LEU B 376 TYR B 377 -1 O LEU B 376 N VAL B 394 SHEET 1 F 4 SER B 468 ALA B 475 0 SHEET 2 F 4 HIS B 406 MET B 414 -1 N LEU B 407 O VAL B 474 SHEET 3 F 4 LYS B 389 TYR B 395 -1 O LYS B 389 N MET B 414 SHEET 4 F 4 PHE B 381 TYR B 382 -1 N PHE B 381 O MET B 390 CISPEP 1 TRP A 424 PRO A 425 0 -0.24 CISPEP 2 TRP B 424 PRO B 425 0 -0.09 CRYST1 84.530 84.530 319.500 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011830 0.006830 0.000000 0.00000 SCALE2 0.000000 0.013660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003130 0.00000