PDB Short entry for 1FS7 HEADER OXIDOREDUCTASE 08-SEP-00 1FS7 TITLE CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C NITRITE REDUCTASE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WOLINELLA SUCCINOGENES; SOURCE 3 ORGANISM_TAXID: 844 KEYWDS C-TYPE CYTOCHROME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.EINSLE,P.STACH,A.MESSERSCHMIDT,J.SIMON,A.KROEGER,R.HUBER, AUTHOR 2 P.M.H.KRONECK REVDAT 6 03-APR-24 1FS7 1 REMARK REVDAT 5 03-MAR-21 1FS7 1 COMPND REMARK SEQADV HET REVDAT 5 2 1 HETNAM HETSYN FORMUL LINK REVDAT 5 3 1 SITE ATOM REVDAT 4 13-JUL-11 1FS7 1 VERSN REVDAT 3 24-FEB-09 1FS7 1 VERSN REVDAT 2 01-APR-03 1FS7 1 JRNL REVDAT 1 17-JAN-01 1FS7 0 JRNL AUTH O.EINSLE,P.STACH,A.MESSERSCHMIDT,J.SIMON,A.KROGER,R.HUBER, JRNL AUTH 2 P.M.KRONECK JRNL TITL CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES. JRNL TITL 2 STRUCTURE AT 1.6 A RESOLUTION, INHIBITOR BINDING, AND JRNL TITL 3 HEME-PACKING MOTIFS. JRNL REF J.BIOL.CHEM. V. 275 39608 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10984487 JRNL DOI 10.1074/JBC.M006188200 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 85740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1327 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3772 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 231 REMARK 3 SOLVENT ATOMS : 647 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.167 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FS7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1000011857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85740 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB1QDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM SULFATE, YTTRIUM REMARK 280 CHLORIDE, SODIUM ACETATE, PH 5.7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 59.91100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 59.91100 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.01250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.91100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.50625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.91100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 139.51875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.91100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 139.51875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.91100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.50625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 59.91100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 59.91100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.01250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.91100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.91100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.01250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.91100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 139.51875 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.91100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 46.50625 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.91100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 46.50625 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.91100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 139.51875 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.91100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.91100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 93.01250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A DIMER GENERATED FROM CHAIN A AND A REMARK 300 TWO-FOLD REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 17930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -334.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 119.82200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 Y Y1 A 654 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1101 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1289 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 23 REMARK 465 ASN A 24 REMARK 465 ILE A 25 REMARK 465 ASN A 26 REMARK 465 GLU A 27 REMARK 465 ARG A 28 REMARK 465 GLU A 29 REMARK 465 LYS A 30 REMARK 465 GLU A 31 REMARK 465 ARG A 32 REMARK 465 VAL A 33 REMARK 465 ALA A 34 REMARK 465 LEU A 35 REMARK 465 ASN A 36 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 226 CB CG CD CE NZ REMARK 480 LYS A 229 CD CE NZ REMARK 480 ARG A 331 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS A 336 CG CD CE NZ REMARK 480 LYS A 342 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1119 O HOH A 1119 15555 2.11 REMARK 500 O2D HEC A 512 O2D HEC A 512 10565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 40 39.50 -143.44 REMARK 500 ILE A 166 108.72 -23.49 REMARK 500 HIS A 277 70.55 22.97 REMARK 500 MET A 300 55.03 -140.68 REMARK 500 ASN A 321 53.07 -143.65 REMARK 500 CYS A 326 -53.92 -123.93 REMARK 500 MET A 327 5.32 -57.58 REMARK 500 GLU A 332 169.58 179.10 REMARK 500 PHE A 445 48.92 -143.17 REMARK 500 THR A 472 -83.61 -117.27 REMARK 500 THR A 505 -70.16 113.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1100 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1220 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A1281 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1282 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1288 DISTANCE = 6.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 510 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 102 NE2 REMARK 620 2 HEC A 510 NA 88.5 REMARK 620 3 HEC A 510 NB 97.8 90.9 REMARK 620 4 HEC A 510 NC 91.2 179.4 89.7 REMARK 620 5 HEC A 510 ND 86.4 88.5 175.8 91.0 REMARK 620 6 HIS A 215 NE2 179.1 90.8 82.8 89.5 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 508 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 134 NZ REMARK 620 2 HEC A 508 NA 96.3 REMARK 620 3 HEC A 508 NB 90.5 89.8 REMARK 620 4 HEC A 508 NC 83.9 179.8 90.1 REMARK 620 5 HEC A 508 ND 90.4 89.6 178.9 90.6 REMARK 620 6 HOH A 658 O 172.5 91.0 91.4 88.9 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 509 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 172 NE2 REMARK 620 2 HEC A 509 NA 89.0 REMARK 620 3 HEC A 509 NB 89.2 90.0 REMARK 620 4 HEC A 509 NC 88.6 177.6 89.5 REMARK 620 5 HEC A 509 ND 93.0 90.1 177.8 90.5 REMARK 620 6 HIS A 313 NE2 176.1 87.8 88.5 94.5 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 651 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 217 OE1 REMARK 620 2 GLU A 217 OE2 51.0 REMARK 620 3 TYR A 218 O 86.7 80.6 REMARK 620 4 LYS A 274 O 92.1 103.4 173.7 REMARK 620 5 GLN A 276 OE1 78.2 128.9 92.5 81.2 REMARK 620 6 HOH A 744 O 129.7 82.0 104.3 81.2 147.4 REMARK 620 7 HOH A 864 O 157.4 145.0 82.8 96.2 82.3 72.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 512 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 288 NE2 REMARK 620 2 HEC A 512 NA 91.6 REMARK 620 3 HEC A 512 NB 95.7 88.7 REMARK 620 4 HEC A 512 NC 89.7 178.6 91.3 REMARK 620 5 HEC A 512 ND 83.8 91.0 179.5 89.0 REMARK 620 6 HIS A 330 NE2 178.9 88.3 83.2 90.4 97.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 511 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 299 NE2 REMARK 620 2 HEC A 511 NA 89.6 REMARK 620 3 HEC A 511 NB 89.6 90.0 REMARK 620 4 HEC A 511 NC 91.3 178.7 89.1 REMARK 620 5 HEC A 511 ND 91.4 90.1 179.0 90.8 REMARK 620 6 HIS A 405 NE2 176.7 93.7 89.9 85.4 89.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 651 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y1 A 652 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y1 A 653 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y1 A 654 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 655 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 656 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 657 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 512 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FS8 RELATED DB: PDB REMARK 900 CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES - REMARK 900 SULFATE COMPLEX REMARK 900 RELATED ID: 1FS9 RELATED DB: PDB REMARK 900 CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES - AZIDE REMARK 900 COMPLEX DBREF 1FS7 A 23 507 UNP Q9S1E5 NRFA_WOLSU 23 507 SEQADV 1FS7 GLU A 45 UNP Q9S1E5 LYS 45 CONFLICT SEQRES 1 A 485 SER ASN ILE ASN GLU ARG GLU LYS GLU ARG VAL ALA LEU SEQRES 2 A 485 ASN LYS THR ALA HIS SER GLN GLY ILE GLU GLY LYS ALA SEQRES 3 A 485 MET SER GLU GLU TRP ALA ARG TYR TYR PRO ARG GLN PHE SEQRES 4 A 485 ASP SER TRP LYS LYS THR LYS GLU SER ASP ASN ILE THR SEQRES 5 A 485 ASP MET LEU LYS GLU LYS PRO ALA LEU VAL VAL ALA TRP SEQRES 6 A 485 ALA GLY TYR PRO PHE SER LYS ASP TYR ASN ALA PRO ARG SEQRES 7 A 485 GLY HIS TYR TYR ALA LEU GLN ASP ASN ILE ASN THR LEU SEQRES 8 A 485 ARG THR GLY ALA PRO VAL ASP GLY LYS THR GLY PRO LEU SEQRES 9 A 485 PRO SER ALA CYS TRP THR CYS LYS SER PRO ASP VAL PRO SEQRES 10 A 485 ARG ILE ILE GLU GLN ASP GLY GLU LEU GLU TYR PHE THR SEQRES 11 A 485 GLY LYS TRP ALA LYS TYR GLY ASP GLU ILE VAL ASN THR SEQRES 12 A 485 ILE GLY CYS TYR ASN CYS HIS ASP ASP LYS SER ALA GLU SEQRES 13 A 485 LEU LYS SER LYS VAL PRO TYR LEU ASP ARG GLY LEU SER SEQRES 14 A 485 ALA ALA GLY PHE LYS THR PHE ALA GLU SER THR HIS GLN SEQRES 15 A 485 GLU LYS ARG SER LEU VAL CYS ALA GLN CYS HIS VAL GLU SEQRES 16 A 485 TYR TYR PHE LYS LYS THR GLU TRP LYS ASP ASP LYS GLY SEQRES 17 A 485 VAL ASP LYS THR ALA MET VAL VAL THR LEU PRO TRP SER SEQRES 18 A 485 LYS GLY ILE SER THR GLU GLN MET GLU ALA TYR TYR ASP SEQRES 19 A 485 GLU ILE ASN PHE ALA ASP TRP THR HIS GLY ILE SER LYS SEQRES 20 A 485 THR PRO MET LEU LYS ALA GLN HIS PRO ASP TRP GLU LEU SEQRES 21 A 485 TYR LYS THR GLY ILE HIS GLY GLN LYS GLY VAL SER CYS SEQRES 22 A 485 ALA ASP CYS HIS MET PRO TYR THR GLN GLU GLY ALA VAL SEQRES 23 A 485 LYS TYR SER ASP HIS LYS VAL GLY ASN PRO LEU ASP ASN SEQRES 24 A 485 MET ASP LYS SER CYS MET ASN CYS HIS ARG GLU SER GLU SEQRES 25 A 485 GLN LYS LEU LYS ASP ILE VAL LYS GLN LYS PHE GLU ARG SEQRES 26 A 485 LYS GLU PHE LEU GLN ASP ILE ALA PHE ASP ASN ILE GLY SEQRES 27 A 485 LYS ALA HIS LEU GLU THR GLY LYS ALA MET GLU LEU GLY SEQRES 28 A 485 ALA THR ASP ALA GLU LEU LYS GLU ILE ARG THR HIS ILE SEQRES 29 A 485 ARG HIS ALA GLN TRP ARG ALA ASP MET ALA ILE ALA GLY SEQRES 30 A 485 HIS GLY SER PHE PHE HIS ALA PRO GLU GLU VAL LEU ARG SEQRES 31 A 485 LEU LEU ALA SER GLY ASN GLU GLU ALA GLN LYS ALA ARG SEQRES 32 A 485 ILE LYS LEU VAL LYS VAL LEU ALA LYS TYR GLY ALA ILE SEQRES 33 A 485 ASP TYR VAL ALA PRO ASP PHE GLU THR LYS GLU LYS ALA SEQRES 34 A 485 GLN LYS LEU ALA LYS VAL ASP MET GLU ALA PHE ILE ALA SEQRES 35 A 485 GLU LYS LEU LYS PHE LYS GLN THR LEU GLU GLN GLU TRP SEQRES 36 A 485 LYS LYS GLN ALA ILE ALA LYS GLY ARG LEU ASN PRO GLU SEQRES 37 A 485 SER LEU LYS GLY VAL ASP GLU LYS SER SER TYR TYR ASP SEQRES 38 A 485 LYS THR LYS LYS HET CA A 651 1 HET Y1 A 652 1 HET Y1 A 653 1 HET Y1 A 654 1 HET ACT A 655 4 HET ACT A 656 4 HET ACT A 657 4 HET HEC A 508 43 HET HEC A 509 43 HET HEC A 510 43 HET HEC A 511 43 HET HEC A 512 43 HETNAM CA CALCIUM ION HETNAM Y1 YTTRIUM ION HETNAM ACT ACETATE ION HETNAM HEC HEME C FORMUL 2 CA CA 2+ FORMUL 3 Y1 3(Y 2+) FORMUL 6 ACT 3(C2 H3 O2 1-) FORMUL 9 HEC 5(C34 H34 FE N4 O4) FORMUL 14 HOH *647(H2 O) HELIX 1 1 MET A 49 ALA A 54 5 6 HELIX 2 2 TYR A 57 LYS A 66 1 10 HELIX 3 3 THR A 67 SER A 70 5 4 HELIX 4 4 ASP A 75 LYS A 80 1 6 HELIX 5 5 PRO A 81 TRP A 87 1 7 HELIX 6 6 TYR A 90 LYS A 94 5 5 HELIX 7 7 GLY A 101 TYR A 103 5 3 HELIX 8 8 TYR A 104 THR A 112 1 9 HELIX 9 9 LEU A 113 GLY A 116 5 4 HELIX 10 10 SER A 128 THR A 132 5 5 HELIX 11 11 PRO A 136 GLY A 146 1 11 HELIX 12 12 GLY A 146 PHE A 151 1 6 HELIX 13 13 TRP A 155 GLY A 159 5 5 HELIX 14 14 GLY A 167 HIS A 172 1 6 HELIX 15 15 PRO A 184 ALA A 193 1 10 HELIX 16 16 THR A 202 GLN A 213 1 12 HELIX 17 17 SER A 247 ILE A 258 1 12 HELIX 18 18 PRO A 278 GLY A 286 1 9 HELIX 19 19 GLY A 286 LYS A 291 1 6 HELIX 20 20 SER A 294 MET A 300 1 7 HELIX 21 21 ASN A 317 ASP A 320 5 4 HELIX 22 22 ASN A 321 CYS A 326 1 6 HELIX 23 23 SER A 333 GLY A 373 1 41 HELIX 24 24 THR A 375 ALA A 398 1 24 HELIX 25 25 GLY A 401 ALA A 406 1 6 HELIX 26 26 ALA A 406 TYR A 435 1 30 HELIX 27 27 THR A 447 ALA A 455 1 9 HELIX 28 28 ASP A 458 THR A 472 1 15 HELIX 29 29 THR A 472 LYS A 484 1 13 HELIX 30 30 ASN A 488 LYS A 493 5 6 SHEET 1 A 2 TYR A 219 LYS A 226 0 SHEET 2 A 2 ASP A 232 THR A 239 -1 N LYS A 233 O TRP A 225 SHEET 1 B 2 TRP A 263 THR A 264 0 SHEET 2 B 2 PRO A 271 MET A 272 -1 N MET A 272 O TRP A 263 SHEET 1 C 2 TYR A 302 GLU A 305 0 SHEET 2 C 2 VAL A 308 SER A 311 -1 O VAL A 308 N GLU A 305 LINK SG CYS A 130 CAB HEC A 508 1555 1555 1.84 LINK SG CYS A 133 CAC HEC A 508 1555 1555 1.86 LINK SG CYS A 168 CAB HEC A 509 1555 1555 1.80 LINK SG CYS A 171 CAC HEC A 509 1555 1555 1.79 LINK SG CYS A 211 CAB HEC A 510 1555 1555 1.85 LINK SG CYS A 214 CAC HEC A 510 1555 1555 1.82 LINK SG CYS A 295 CAB HEC A 511 1555 1555 1.83 LINK SG CYS A 298 CAC HEC A 511 1555 1555 1.83 LINK SG CYS A 326 CAB HEC A 512 1555 1555 1.80 LINK SG CYS A 329 CAC HEC A 512 1555 1555 1.83 LINK NE2 HIS A 102 FE HEC A 510 1555 1555 2.04 LINK NZ LYS A 134 FE HEC A 508 1555 1555 2.12 LINK NE2 HIS A 172 FE HEC A 509 1555 1555 1.96 LINK NE2 HIS A 215 FE HEC A 510 1555 1555 2.04 LINK OE1 GLU A 217 CA CA A 651 1555 1555 2.60 LINK OE2 GLU A 217 CA CA A 651 1555 1555 2.47 LINK O TYR A 218 CA CA A 651 1555 1555 2.35 LINK O LYS A 274 CA CA A 651 1555 1555 2.38 LINK OE1 GLN A 276 CA CA A 651 1555 1555 2.27 LINK NE2 HIS A 288 FE HEC A 512 1555 1555 2.04 LINK NE2 HIS A 299 FE HEC A 511 1555 1555 2.04 LINK NE2 HIS A 313 FE HEC A 509 1555 1555 2.04 LINK NE2 HIS A 330 FE HEC A 512 1555 1555 2.02 LINK NE2 HIS A 405 FE HEC A 511 1555 1555 2.13 LINK FE HEC A 508 O HOH A 658 1555 1555 2.03 LINK CA CA A 651 O HOH A 744 1555 1555 2.44 LINK CA CA A 651 O HOH A 864 1555 1555 2.42 SITE 1 AC1 6 GLU A 217 TYR A 218 LYS A 274 GLN A 276 SITE 2 AC1 6 HOH A 744 HOH A 864 SITE 1 AC2 7 GLU A 52 ASP A 444 HOH A 814 HOH A 946 SITE 2 AC2 7 HOH A 947 HOH A 948 HOH A 951 SITE 1 AC3 7 PRO A 99 HEC A 510 HEC A 511 ACT A 656 SITE 2 AC3 7 HOH A 821 HOH A 875 HOH A 954 SITE 1 AC4 3 GLU A 408 HEC A 512 ACT A 657 SITE 1 AC5 7 GLY A 43 GLU A 45 TYR A 56 HOH A 814 SITE 2 AC5 7 HOH A 946 HOH A 951 HOH A 987 SITE 1 AC6 5 HEC A 511 Y1 A 653 HOH A 821 HOH A 954 SITE 2 AC6 5 HOH A1154 SITE 1 AC7 6 ILE A 287 PRO A 407 GLU A 408 HEC A 512 SITE 2 AC7 6 Y1 A 654 HOH A 962 SITE 1 AC8 26 TYR A 96 ASN A 97 PRO A 99 ASP A 108 SITE 2 AC8 26 ASN A 109 THR A 112 ARG A 114 THR A 115 SITE 3 AC8 26 LEU A 126 CYS A 130 CYS A 133 LYS A 134 SITE 4 AC8 26 CYS A 214 HIS A 215 TYR A 218 HIS A 277 SITE 5 AC8 26 ALA A 398 HIS A 400 HEC A 510 HOH A 658 SITE 6 AC8 26 HOH A 690 HOH A 693 HOH A 712 HOH A 714 SITE 7 AC8 26 HOH A 718 HOH A 761 SITE 1 AC9 17 TYR A 57 GLN A 60 TRP A 64 GLY A 167 SITE 2 AC9 17 CYS A 168 CYS A 171 HIS A 172 LEU A 179 SITE 3 AC9 17 HIS A 203 ARG A 207 MET A 300 TYR A 302 SITE 4 AC9 17 TYR A 310 SER A 311 HIS A 313 HEC A 510 SITE 5 AC9 17 HOH A 983 SITE 1 BC1 26 SER A 70 PRO A 99 ARG A 100 GLY A 101 SITE 2 BC1 26 HIS A 102 TYR A 104 ALA A 105 ASP A 108 SITE 3 BC1 26 CYS A 133 LYS A 134 ILE A 166 VAL A 210 SITE 4 BC1 26 CYS A 211 CYS A 214 HIS A 215 HIS A 299 SITE 5 BC1 26 VAL A 315 HEC A 508 HEC A 509 HEC A 511 SITE 6 BC1 26 Y1 A 653 HOH A 688 HOH A 689 HOH A 821 SITE 7 BC1 26 HOH A 875 HOH A1145 SITE 1 BC2 22 PRO A 99 TRP A 280 TYR A 283 HIS A 288 SITE 2 BC2 22 SER A 294 CYS A 295 CYS A 298 HIS A 299 SITE 3 BC2 22 ASN A 317 LEU A 319 HIS A 400 GLY A 401 SITE 4 BC2 22 PHE A 403 PHE A 404 HIS A 405 HEC A 510 SITE 5 BC2 22 HEC A 512 Y1 A 653 ACT A 656 HOH A 821 SITE 6 BC2 22 HOH A 876 HOH A 955 SITE 1 BC3 18 ILE A 287 HIS A 288 VAL A 293 PRO A 318 SITE 2 BC3 18 SER A 325 CYS A 326 CYS A 329 HIS A 330 SITE 3 BC3 18 LEU A 337 LYS A 344 PHE A 404 PRO A 407 SITE 4 BC3 18 GLU A 408 HEC A 511 Y1 A 654 ACT A 657 SITE 5 BC3 18 HOH A 877 HOH A1094 CRYST1 119.822 119.822 186.025 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008346 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005376 0.00000