PDB Short entry for 1FS9 HEADER OXIDOREDUCTASE 08-SEP-00 1FS9 TITLE CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES-AZIDE TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C NITRITE REDUCTASE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WOLINELLA SUCCINOGENES; SOURCE 3 ORGANISM_TAXID: 844 KEYWDS C-TYPE CYTOCHROME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.EINSLE,P.STACH,A.MESSERSCHMIDT,J.SIMON,A.KROEGER,R.HUBER, AUTHOR 2 P.M.H.KRONECK REVDAT 5 03-MAR-21 1FS9 1 COMPND REMARK SEQADV HET REVDAT 5 2 1 HETNAM HETSYN FORMUL LINK REVDAT 5 3 1 SITE ATOM REVDAT 4 13-JUL-11 1FS9 1 VERSN REVDAT 3 24-FEB-09 1FS9 1 VERSN REVDAT 2 01-APR-03 1FS9 1 JRNL REVDAT 1 17-JAN-01 1FS9 0 JRNL AUTH O.EINSLE,P.STACH,A.MESSERSCHMIDT,J.SIMON,A.KROGER,R.HUBER, JRNL AUTH 2 P.M.KRONECK JRNL TITL CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES. JRNL TITL 2 STRUCTURE AT 1.6 A RESOLUTION, INHIBITOR BINDING, AND JRNL TITL 3 HEME-PACKING MOTIFS. JRNL REF J.BIOL.CHEM. V. 275 39608 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10984487 JRNL DOI 10.1074/JBC.M006188200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 5.0 REMARK 3 NUMBER OF REFLECTIONS : 45563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2288 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3772 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 222 REMARK 3 SOLVENT ATOMS : 425 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 2.259 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1000011859. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45592 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000; AMMONIUM SULFATE; YTTRIUM REMARK 280 TRICHLORIDE; SODIUM ACETATE, PH 5.7, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 59.76600 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.02800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.51400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.76600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 139.54200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 139.54200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.76600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.51400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 59.76600 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.02800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.76600 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.02800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.76600 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 139.54200 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 46.51400 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.76600 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 46.51400 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 139.54200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.76600 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 93.02800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER CONSTRUCTED FROM CHAIN A REMARK 300 A SYMMETRY PARTNER GENERATED BY THE TWO-FOLD. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -317.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 119.53200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 Y Y1 A 516 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 PHE A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 SER A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 ALA A 14 REMARK 465 ILE A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 MET A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 20 REMARK 465 LEU A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 ASN A 24 REMARK 465 ILE A 25 REMARK 465 ASN A 26 REMARK 465 GLU A 27 REMARK 465 ARG A 28 REMARK 465 GLU A 29 REMARK 465 LYS A 30 REMARK 465 GLU A 31 REMARK 465 ARG A 32 REMARK 465 VAL A 33 REMARK 465 ALA A 34 REMARK 465 LEU A 35 REMARK 465 ASN A 36 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 226 CB CG CD CE NZ REMARK 480 LYS A 229 CD CE NZ REMARK 480 ARG A 331 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS A 336 CG CD CE NZ REMARK 480 LYS A 342 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 927 O HOH A 927 10565 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 40 43.59 -141.49 REMARK 500 TYR A 96 110.46 -160.18 REMARK 500 ARG A 100 -167.72 -129.23 REMARK 500 THR A 132 -54.65 -25.73 REMARK 500 ILE A 166 109.52 -22.21 REMARK 500 HIS A 277 71.19 20.80 REMARK 500 ALA A 307 -30.24 80.41 REMARK 500 MET A 327 -3.05 -58.66 REMARK 500 ARG A 331 71.36 -116.00 REMARK 500 PHE A 445 50.00 -142.60 REMARK 500 THR A 472 -84.12 -120.21 REMARK 500 THR A 505 -84.64 96.57 REMARK 500 LYS A 506 -170.92 -65.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 901 DISTANCE = 6.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 510 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 102 NE2 REMARK 620 2 HEC A 510 NA 87.8 REMARK 620 3 HEC A 510 NB 94.8 91.0 REMARK 620 4 HEC A 510 NC 90.0 177.8 89.4 REMARK 620 5 HEC A 510 ND 88.8 89.4 176.3 90.4 REMARK 620 6 HIS A 215 NE2 177.5 90.1 84.0 92.1 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 508 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 134 NZ REMARK 620 2 HEC A 508 NA 90.7 REMARK 620 3 HEC A 508 NB 90.9 91.6 REMARK 620 4 HEC A 508 NC 85.8 176.3 89.7 REMARK 620 5 HEC A 508 ND 89.2 88.5 179.8 90.2 REMARK 620 6 HOH A 518 O 173.6 87.7 82.9 95.9 97.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 509 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 172 NE2 REMARK 620 2 HEC A 509 NA 89.7 REMARK 620 3 HEC A 509 NB 87.1 90.5 REMARK 620 4 HEC A 509 NC 87.4 177.1 89.1 REMARK 620 5 HEC A 509 ND 94.5 90.3 178.2 90.1 REMARK 620 6 HIS A 313 NE2 174.8 88.2 88.2 94.7 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 513 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 217 OE2 REMARK 620 2 GLU A 217 OE1 52.4 REMARK 620 3 TYR A 218 O 81.9 90.0 REMARK 620 4 LYS A 274 O 105.0 93.4 173.0 REMARK 620 5 GLN A 276 OE1 131.6 79.9 91.8 82.8 REMARK 620 6 HOH A 603 O 82.6 132.5 99.0 83.2 145.4 REMARK 620 7 HOH A 728 O 146.5 154.1 79.6 94.8 76.8 73.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 512 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 288 NE2 REMARK 620 2 HEC A 512 NA 91.1 REMARK 620 3 HEC A 512 NB 96.4 89.8 REMARK 620 4 HEC A 512 NC 91.8 177.1 90.2 REMARK 620 5 HEC A 512 ND 84.5 90.0 179.2 89.9 REMARK 620 6 HIS A 330 NE2 175.4 89.8 88.1 87.2 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 511 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 299 NE2 REMARK 620 2 HEC A 511 NA 89.5 REMARK 620 3 HEC A 511 NB 90.9 90.5 REMARK 620 4 HEC A 511 NC 91.1 179.2 89.0 REMARK 620 5 HEC A 511 ND 90.0 89.4 179.2 91.1 REMARK 620 6 HIS A 405 NE2 175.3 94.5 91.6 85.0 87.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y1 A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y1 A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y1 A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 512 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FS7 RELATED DB: PDB REMARK 900 CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES REMARK 900 RELATED ID: 1FS8 RELATED DB: PDB REMARK 900 CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES - REMARK 900 SULFATE COMPLEX DBREF 1FS9 A 1 507 UNP Q9S1E5 NRFA_WOLSU 1 507 SEQADV 1FS9 GLU A 45 UNP Q9S1E5 LYS 45 CONFLICT SEQRES 1 A 507 MET THR LYS PHE LYS LEU LEU LEU ALA GLY SER LEU VAL SEQRES 2 A 507 ALA ILE VAL SER MET GLY LEU LEU ALA SER ASN ILE ASN SEQRES 3 A 507 GLU ARG GLU LYS GLU ARG VAL ALA LEU ASN LYS THR ALA SEQRES 4 A 507 HIS SER GLN GLY ILE GLU GLY LYS ALA MET SER GLU GLU SEQRES 5 A 507 TRP ALA ARG TYR TYR PRO ARG GLN PHE ASP SER TRP LYS SEQRES 6 A 507 LYS THR LYS GLU SER ASP ASN ILE THR ASP MET LEU LYS SEQRES 7 A 507 GLU LYS PRO ALA LEU VAL VAL ALA TRP ALA GLY TYR PRO SEQRES 8 A 507 PHE SER LYS ASP TYR ASN ALA PRO ARG GLY HIS TYR TYR SEQRES 9 A 507 ALA LEU GLN ASP ASN ILE ASN THR LEU ARG THR GLY ALA SEQRES 10 A 507 PRO VAL ASP GLY LYS THR GLY PRO LEU PRO SER ALA CYS SEQRES 11 A 507 TRP THR CYS LYS SER PRO ASP VAL PRO ARG ILE ILE GLU SEQRES 12 A 507 GLN ASP GLY GLU LEU GLU TYR PHE THR GLY LYS TRP ALA SEQRES 13 A 507 LYS TYR GLY ASP GLU ILE VAL ASN THR ILE GLY CYS TYR SEQRES 14 A 507 ASN CYS HIS ASP ASP LYS SER ALA GLU LEU LYS SER LYS SEQRES 15 A 507 VAL PRO TYR LEU ASP ARG GLY LEU SER ALA ALA GLY PHE SEQRES 16 A 507 LYS THR PHE ALA GLU SER THR HIS GLN GLU LYS ARG SER SEQRES 17 A 507 LEU VAL CYS ALA GLN CYS HIS VAL GLU TYR TYR PHE LYS SEQRES 18 A 507 LYS THR GLU TRP LYS ASP ASP LYS GLY VAL ASP LYS THR SEQRES 19 A 507 ALA MET VAL VAL THR LEU PRO TRP SER LYS GLY ILE SER SEQRES 20 A 507 THR GLU GLN MET GLU ALA TYR TYR ASP GLU ILE ASN PHE SEQRES 21 A 507 ALA ASP TRP THR HIS GLY ILE SER LYS THR PRO MET LEU SEQRES 22 A 507 LYS ALA GLN HIS PRO ASP TRP GLU LEU TYR LYS THR GLY SEQRES 23 A 507 ILE HIS GLY GLN LYS GLY VAL SER CYS ALA ASP CYS HIS SEQRES 24 A 507 MET PRO TYR THR GLN GLU GLY ALA VAL LYS TYR SER ASP SEQRES 25 A 507 HIS LYS VAL GLY ASN PRO LEU ASP ASN MET ASP LYS SER SEQRES 26 A 507 CYS MET ASN CYS HIS ARG GLU SER GLU GLN LYS LEU LYS SEQRES 27 A 507 ASP ILE VAL LYS GLN LYS PHE GLU ARG LYS GLU PHE LEU SEQRES 28 A 507 GLN ASP ILE ALA PHE ASP ASN ILE GLY LYS ALA HIS LEU SEQRES 29 A 507 GLU THR GLY LYS ALA MET GLU LEU GLY ALA THR ASP ALA SEQRES 30 A 507 GLU LEU LYS GLU ILE ARG THR HIS ILE ARG HIS ALA GLN SEQRES 31 A 507 TRP ARG ALA ASP MET ALA ILE ALA GLY HIS GLY SER PHE SEQRES 32 A 507 PHE HIS ALA PRO GLU GLU VAL LEU ARG LEU LEU ALA SER SEQRES 33 A 507 GLY ASN GLU GLU ALA GLN LYS ALA ARG ILE LYS LEU VAL SEQRES 34 A 507 LYS VAL LEU ALA LYS TYR GLY ALA ILE ASP TYR VAL ALA SEQRES 35 A 507 PRO ASP PHE GLU THR LYS GLU LYS ALA GLN LYS LEU ALA SEQRES 36 A 507 LYS VAL ASP MET GLU ALA PHE ILE ALA GLU LYS LEU LYS SEQRES 37 A 507 PHE LYS GLN THR LEU GLU GLN GLU TRP LYS LYS GLN ALA SEQRES 38 A 507 ILE ALA LYS GLY ARG LEU ASN PRO GLU SER LEU LYS GLY SEQRES 39 A 507 VAL ASP GLU LYS SER SER TYR TYR ASP LYS THR LYS LYS HET CA A 513 1 HET Y1 A 514 1 HET Y1 A 515 1 HET Y1 A 516 1 HET AZI A 517 3 HET HEC A 508 43 HET HEC A 509 43 HET HEC A 510 43 HET HEC A 511 43 HET HEC A 512 43 HETNAM CA CALCIUM ION HETNAM Y1 YTTRIUM ION HETNAM AZI AZIDE ION HETNAM HEC HEME C FORMUL 2 CA CA 2+ FORMUL 3 Y1 3(Y 2+) FORMUL 6 AZI N3 1- FORMUL 7 HEC 5(C34 H34 FE N4 O4) FORMUL 12 HOH *425(H2 O) HELIX 1 1 MET A 49 ALA A 54 5 6 HELIX 2 2 TYR A 57 LYS A 66 1 10 HELIX 3 3 THR A 67 SER A 70 5 4 HELIX 4 4 ASP A 75 LYS A 80 1 6 HELIX 5 5 PRO A 81 TRP A 87 1 7 HELIX 6 6 TYR A 90 LYS A 94 5 5 HELIX 7 7 GLY A 101 TYR A 103 5 3 HELIX 8 8 TYR A 104 THR A 112 1 9 HELIX 9 9 LEU A 113 GLY A 116 5 4 HELIX 10 10 SER A 128 TRP A 131 5 4 HELIX 11 11 PRO A 136 GLY A 146 1 11 HELIX 12 12 GLY A 146 PHE A 151 1 6 HELIX 13 13 TRP A 155 GLY A 159 5 5 HELIX 14 14 GLY A 167 HIS A 172 1 6 HELIX 15 15 VAL A 183 ALA A 193 1 11 HELIX 16 16 THR A 202 GLN A 213 1 12 HELIX 17 17 SER A 247 ILE A 258 1 12 HELIX 18 18 PRO A 278 LYS A 284 1 7 HELIX 19 19 GLY A 286 GLY A 292 1 7 HELIX 20 20 SER A 294 MET A 300 1 7 HELIX 21 21 ASN A 317 ASP A 320 5 4 HELIX 22 22 ASN A 321 CYS A 326 1 6 HELIX 23 23 SER A 333 LEU A 372 1 40 HELIX 24 24 THR A 375 ALA A 398 1 24 HELIX 25 25 GLY A 401 ALA A 406 1 6 HELIX 26 26 ALA A 406 TYR A 435 1 30 HELIX 27 27 THR A 447 ALA A 455 1 9 HELIX 28 28 ASP A 458 THR A 472 1 15 HELIX 29 29 THR A 472 LYS A 484 1 13 HELIX 30 30 ASN A 488 LYS A 493 5 6 SHEET 1 A 2 TYR A 219 LYS A 226 0 SHEET 2 A 2 ASP A 232 THR A 239 -1 N LYS A 233 O TRP A 225 SHEET 1 B 2 TRP A 263 THR A 264 0 SHEET 2 B 2 PRO A 271 MET A 272 -1 N MET A 272 O TRP A 263 SHEET 1 C 2 TYR A 302 GLN A 304 0 SHEET 2 C 2 LYS A 309 SER A 311 -1 N TYR A 310 O THR A 303 LINK SG CYS A 130 CAB HEC A 508 1555 1555 1.82 LINK SG CYS A 133 CAC HEC A 508 1555 1555 1.83 LINK SG CYS A 168 CAB HEC A 509 1555 1555 1.81 LINK SG CYS A 171 CAC HEC A 509 1555 1555 1.80 LINK SG CYS A 211 CAB HEC A 510 1555 1555 1.85 LINK SG CYS A 214 CAC HEC A 510 1555 1555 1.84 LINK SG CYS A 295 CAB HEC A 511 1555 1555 1.82 LINK SG CYS A 298 CAC HEC A 511 1555 1555 1.84 LINK SG CYS A 326 CAB HEC A 512 1555 1555 1.80 LINK SG CYS A 329 CAC HEC A 512 1555 1555 1.81 LINK NE2 HIS A 102 FE HEC A 510 1555 1555 2.09 LINK NZ LYS A 134 FE HEC A 508 1555 1555 2.22 LINK NE2 HIS A 172 FE HEC A 509 1555 1555 1.95 LINK NE2 HIS A 215 FE HEC A 510 1555 1555 2.10 LINK OE2 GLU A 217 CA CA A 513 1555 1555 2.40 LINK OE1 GLU A 217 CA CA A 513 1555 1555 2.56 LINK O TYR A 218 CA CA A 513 1555 1555 2.39 LINK O LYS A 274 CA CA A 513 1555 1555 2.33 LINK OE1 GLN A 276 CA CA A 513 1555 1555 2.39 LINK NE2 HIS A 288 FE HEC A 512 1555 1555 2.05 LINK NE2 HIS A 299 FE HEC A 511 1555 1555 2.10 LINK NE2 HIS A 313 FE HEC A 509 1555 1555 2.02 LINK NE2 HIS A 330 FE HEC A 512 1555 1555 1.98 LINK NE2 HIS A 405 FE HEC A 511 1555 1555 2.08 LINK FE HEC A 508 O HOH A 518 1555 1555 2.07 LINK CA CA A 513 O HOH A 603 1555 1555 2.46 LINK CA CA A 513 O HOH A 728 1555 1555 2.57 SITE 1 AC1 6 GLU A 217 TYR A 218 LYS A 274 GLN A 276 SITE 2 AC1 6 HOH A 603 HOH A 728 SITE 1 AC2 7 GLU A 52 ASP A 444 HOH A 674 HOH A 811 SITE 2 AC2 7 HOH A 812 HOH A 813 HOH A 816 SITE 1 AC3 8 PRO A 99 HEC A 510 HEC A 511 HOH A 683 SITE 2 AC3 8 HOH A 739 HOH A 819 HOH A 820 HOH A 907 SITE 1 AC4 3 GLU A 408 HEC A 512 HOH A 866 SITE 1 AC5 5 PHE A 92 ARG A 114 TYR A 218 GLN A 276 SITE 2 AC5 5 HEC A 508 SITE 1 AC6 26 TYR A 96 ASN A 97 ASP A 108 ASN A 109 SITE 2 AC6 26 THR A 112 ARG A 114 LEU A 126 CYS A 130 SITE 3 AC6 26 CYS A 133 LYS A 134 CYS A 214 HIS A 215 SITE 4 AC6 26 TYR A 218 HIS A 277 ALA A 398 HIS A 400 SITE 5 AC6 26 HEC A 510 AZI A 517 HOH A 518 HOH A 545 SITE 6 AC6 26 HOH A 548 HOH A 569 HOH A 571 HOH A 575 SITE 7 AC6 26 HOH A 582 HOH A 620 SITE 1 AC7 18 TYR A 57 GLN A 60 TRP A 64 GLY A 167 SITE 2 AC7 18 CYS A 168 CYS A 171 HIS A 172 LEU A 179 SITE 3 AC7 18 HIS A 203 ARG A 207 MET A 300 TYR A 302 SITE 4 AC7 18 TYR A 310 SER A 311 HIS A 313 HEC A 510 SITE 5 AC7 18 HOH A 828 HOH A 848 SITE 1 AC8 26 SER A 70 PRO A 99 ARG A 100 GLY A 101 SITE 2 AC8 26 HIS A 102 TYR A 104 ALA A 105 ASP A 108 SITE 3 AC8 26 CYS A 133 LYS A 134 ILE A 166 VAL A 210 SITE 4 AC8 26 CYS A 211 CYS A 214 HIS A 215 CYS A 295 SITE 5 AC8 26 VAL A 315 HEC A 508 HEC A 509 HEC A 511 SITE 6 AC8 26 Y1 A 515 HOH A 543 HOH A 544 HOH A 683 SITE 7 AC8 26 HOH A 739 HOH A 905 SITE 1 AC9 21 PRO A 99 HIS A 215 TYR A 283 HIS A 288 SITE 2 AC9 21 SER A 294 CYS A 295 CYS A 298 HIS A 299 SITE 3 AC9 21 ASN A 317 LEU A 319 HIS A 400 GLY A 401 SITE 4 AC9 21 PHE A 403 PHE A 404 HIS A 405 HEC A 510 SITE 5 AC9 21 HEC A 512 Y1 A 515 HOH A 683 HOH A 820 SITE 6 AC9 21 HOH A 821 SITE 1 BC1 14 ILE A 287 HIS A 288 PRO A 318 SER A 325 SITE 2 BC1 14 CYS A 326 CYS A 329 HIS A 330 LEU A 337 SITE 3 BC1 14 LYS A 344 PHE A 404 HEC A 511 Y1 A 516 SITE 4 BC1 14 HOH A 741 HOH A 866 CRYST1 119.532 119.532 186.056 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008366 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005375 0.00000