PDB Short entry for 1FV9 HEADER BLOOD CLOTTING 19-SEP-00 1FV9 TITLE CRYSTAL STRUCTURE OF HUMAN MICROUROKINASE IN COMPLEX WITH 2-AMINO-5- TITLE 2 HYDROXY-BENZIMIDAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROKINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: B CHAIN (16-243); COMPND 5 EC: 3.4.21.73; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS KEYWDS PLASMINOGEN ACTIVATION, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR V.NIENABER REVDAT 5 31-JAN-18 1FV9 1 REMARK REVDAT 4 04-OCT-17 1FV9 1 REMARK REVDAT 3 24-FEB-09 1FV9 1 VERSN REVDAT 2 31-MAY-05 1FV9 1 JRNL REVDAT 1 18-OCT-00 1FV9 0 JRNL AUTH P.J.HAJDUK,S.BOYD,D.NETTESHEIM,V.NIENABER,J.SEVERIN,R.SMITH, JRNL AUTH 2 D.DAVIDSON,T.ROCKWAY,S.W.FESIK JRNL TITL IDENTIFICATION OF NOVEL INHIBITORS OF UROKINASE VIA JRNL TITL 2 NMR-BASED SCREENING. JRNL REF J.MED.CHEM. V. 43 3862 2000 JRNL REFN ISSN 0022-2623 JRNL PMID 11052791 JRNL DOI 10.1021/JM0002228 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 TITL RE-ENGINEERING OF HUMAN UROKINASE PROVIDES A SYSTEM FOR REMARK 1 TITL 2 STRUCTURE-BASED DRUG DESIGN AT HIGH RESOLUTION AND REVEALS A REMARK 1 TITL 3 NOVEL STRUCTURAL SUBSITE REMARK 1 REF J.BIOL.CHEM. V. 275 7239 2000 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 98.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 2625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 460 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1933 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.026 REMARK 3 BOND ANGLES (DEGREES) : 3.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.350 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.670 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.480 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.740 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.040 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1000011931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 160 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M LISO4, 20% PEG 4000, SUCCINATE REMARK 280 BUFFER, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 18K, REMARK 280 TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 33 CB SER A 33 OG 0.087 REMARK 500 GLU A 78 CG GLU A 78 CD 0.091 REMARK 500 SER A 197 CB SER A 197 OG -0.087 REMARK 500 ARG A 241 NE ARG A 241 CZ 0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 23 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 CYS A 30 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 SER A 36 N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 CYS A 46 CA - CB - SG ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP A 55 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 SER A 63 CA - CB - OG ANGL. DEV. = 24.1 DEGREES REMARK 500 GLN A 70 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 LEU A 91 CA - CB - CG ANGL. DEV. = 28.8 DEGREES REMARK 500 LEU A 91 CB - CG - CD1 ANGL. DEV. = -12.2 DEGREES REMARK 500 LEU A 91 CB - CG - CD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 ALA A 92 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 ASP A 96 CB - CG - OD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP A 96 CB - CG - OD2 ANGL. DEV. = -9.4 DEGREES REMARK 500 CYS A 109 CA - CB - SG ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG A 114 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG A 114 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 114 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASN A 143 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 MET A 180 N - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 LEU A 181 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 GLN A 187 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 LYS A 189 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 ASP A 196 CA - CB - CG ANGL. DEV. = 18.7 DEGREES REMARK 500 ASP A 196 CB - CG - OD1 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 208 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 219 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 219 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 225 CB - CG - OD1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP A 225 CB - CG - OD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG A 241 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 241 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 23 99.35 -64.79 REMARK 500 SER A 25 -155.49 69.81 REMARK 500 VAL A 29 -70.29 -87.42 REMARK 500 SER A 36 147.04 -178.44 REMARK 500 SER A 42 -154.81 -164.09 REMARK 500 GLU A 54 -9.47 -56.98 REMARK 500 LEU A 65 -43.57 -25.72 REMARK 500 ASN A 66 38.41 -141.48 REMARK 500 GLN A 70 94.51 -51.56 REMARK 500 LYS A 84 -6.34 -47.95 REMARK 500 LEU A 91 -66.19 79.01 REMARK 500 ASN A 95 62.18 39.98 REMARK 500 ARG A 103 110.28 177.85 REMARK 500 CYS A 109 175.09 -53.96 REMARK 500 SER A 113 -137.69 -79.62 REMARK 500 ILE A 116 80.64 -152.80 REMARK 500 TYR A 125 54.19 23.72 REMARK 500 CYS A 134 -166.67 -119.27 REMARK 500 TYR A 171 -105.72 -93.73 REMARK 500 ALA A 183 144.19 -171.83 REMARK 500 GLN A 187 159.85 -31.79 REMARK 500 TRP A 188 -22.78 81.69 REMARK 500 ASP A 191 178.02 174.81 REMARK 500 CYS A 193 -159.61 -177.01 REMARK 500 GLN A 206 -20.14 72.84 REMARK 500 LEU A 211 73.18 -64.12 REMARK 500 SER A 216 -56.72 -129.81 REMARK 500 ALA A 222 46.97 76.69 REMARK 500 LYS A 224 109.33 -56.58 REMARK 500 ASP A 225 2.18 95.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 25 VAL A 26 -149.41 REMARK 500 PRO A 186 GLN A 187 -129.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 56 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 53 -14.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 172 A 246 DBREF 1FV9 A 1 244 UNP P00749 UROK_HUMAN 179 423 SEQADV 1FV9 ALA A 120 UNP P00749 CYS 299 CONFLICT SEQRES 1 A 245 ILE ILE GLY GLY GLU PHE THR THR ILE GLU ASN GLN PRO SEQRES 2 A 245 TRP PHE ALA ALA ILE TYR ARG ARG HIS ARG GLY GLY SER SEQRES 3 A 245 VAL THR TYR VAL CYS GLY GLY SER LEU MET SER PRO CYS SEQRES 4 A 245 TRP VAL ILE SER ALA THR HIS CYS PHE ILE ASP TYR PRO SEQRES 5 A 245 LYS LYS GLU ASP TYR ILE VAL TYR LEU GLY ARG SER ARG SEQRES 6 A 245 LEU ASN SER ASN THR GLN GLY GLU MET LYS PHE GLU VAL SEQRES 7 A 245 GLU ASN LEU ILE LEU HIS LYS ASP TYR SER ALA ASP THR SEQRES 8 A 245 LEU ALA HIS HIS ASN ASP ILE ALA LEU LEU LYS ILE ARG SEQRES 9 A 245 SER LYS GLU GLY ARG CYS ALA GLN PRO SER ARG THR ILE SEQRES 10 A 245 GLN THR ILE ALA LEU PRO SER MET TYR ASN ASP PRO GLN SEQRES 11 A 245 PHE GLY THR SER CYS GLU ILE THR GLY PHE GLY LYS GLU SEQRES 12 A 245 ASN SER THR ASP TYR LEU TYR PRO GLU GLN LEU LYS MET SEQRES 13 A 245 THR VAL VAL LYS LEU ILE SER HIS ARG GLU CYS GLN GLN SEQRES 14 A 245 PRO HIS TYR TYR GLY SER GLU VAL THR THR LYS MET LEU SEQRES 15 A 245 CYS ALA ALA ASP PRO GLN TRP LYS THR ASP SER CYS GLN SEQRES 16 A 245 GLY ASP SER GLY GLY PRO LEU VAL CYS SER LEU GLN GLY SEQRES 17 A 245 ARG MET THR LEU THR GLY ILE VAL SER TRP GLY ARG GLY SEQRES 18 A 245 CYS ALA LEU LYS ASP LYS PRO GLY VAL TYR THR ARG VAL SEQRES 19 A 245 SER HIS PHE LEU PRO TRP ILE ARG SER HIS THR HET SO4 A 245 5 HET 172 A 246 11 HETNAM SO4 SULFATE ION HETNAM 172 2-AMINO-5-HYDROXY-BENZIMIDAZOLE FORMUL 2 SO4 O4 S 2- FORMUL 3 172 C7 H7 N3 O HELIX 1 1 THR A 8 GLN A 12 5 5 HELIX 2 2 ALA A 43 PHE A 47 5 5 HELIX 3 3 LYS A 52 GLU A 54 5 3 HELIX 4 4 SER A 162 GLN A 167 1 6 HELIX 5 5 TYR A 172 VAL A 176 5 5 HELIX 6 6 PHE A 236 SER A 242 1 7 SHEET 1 A 3 GLU A 5 PHE A 6 0 SHEET 2 A 3 LYS A 154 LYS A 159 -1 N MET A 155 O GLU A 5 SHEET 3 A 3 SER A 133 GLY A 138 -1 N CYS A 134 O VAL A 158 SHEET 1 B 7 SER A 25 CYS A 30 0 SHEET 2 B 7 ALA A 17 HIS A 22 -1 N ILE A 18 O CYS A 30 SHEET 3 B 7 TYR A 56 LEU A 60 -1 O ILE A 57 N TYR A 19 SHEET 4 B 7 MET A 73 LEU A 82 -1 N MET A 73 O LEU A 60 SHEET 5 B 7 ALA A 98 ARG A 103 -1 O LEU A 99 N ILE A 81 SHEET 6 B 7 TRP A 39 SER A 42 -1 O VAL A 40 N LEU A 100 SHEET 7 B 7 SER A 33 SER A 36 -1 O SER A 33 N ILE A 41 SHEET 1 C 2 SER A 87 ALA A 88 0 SHEET 2 C 2 HIS A 93 HIS A 94 -1 N HIS A 94 O SER A 87 SHEET 1 D 4 MET A 180 ALA A 183 0 SHEET 2 D 4 LYS A 226 ARG A 232 -1 N GLY A 228 O ALA A 183 SHEET 3 D 4 ARG A 208 LEU A 223 -1 O ILE A 214 N THR A 231 SHEET 4 D 4 PRO A 200 LEU A 205 -1 N LEU A 201 O GLY A 213 SSBOND 1 CYS A 30 CYS A 46 1555 1555 1.95 SSBOND 2 CYS A 38 CYS A 109 1555 1555 2.01 SSBOND 3 CYS A 134 CYS A 203 1555 1555 2.01 SSBOND 4 CYS A 166 CYS A 182 1555 1555 2.04 SSBOND 5 CYS A 193 CYS A 221 1555 1555 2.02 SITE 1 AC1 5 HIS A 45 GLN A 194 GLY A 195 SER A 197 SITE 2 AC1 5 172 A 246 SITE 1 AC2 9 ASP A 191 SER A 192 CYS A 193 GLN A 194 SITE 2 AC2 9 VAL A 215 GLY A 218 GLY A 220 GLY A 228 SITE 3 AC2 9 SO4 A 245 CRYST1 55.160 53.000 82.300 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012151 0.00000