PDB Short entry for 1FVC HEADER IMMUNOGLOBULIN 20-OCT-92 1FVC TITLE X-RAY STRUCTURES OF THE ANTIGEN-BINDING DOMAINS FROM THREE VARIANTS OF TITLE 2 HUMANIZED ANTI-P185-HER2 ANTIBODY 4D5 AND COMPARISON WITH MOLECULAR TITLE 3 MODELING COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG1-KAPPA 4D5 FV (LIGHT CHAIN); COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG1-KAPPA 4D5 FV (HEAVY CHAIN); COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR C.EIGENBROT,M.RANDAL,A.A.KOSSIAKOFF,L.PRESTA REVDAT 5 29-NOV-17 1FVC 1 REMARK HELIX REVDAT 4 25-AUG-09 1FVC 1 SOURCE REVDAT 3 24-FEB-09 1FVC 1 VERSN REVDAT 2 01-APR-03 1FVC 1 JRNL REVDAT 1 31-OCT-93 1FVC 0 JRNL AUTH C.EIGENBROT,M.RANDAL,L.PRESTA,P.CARTER,A.A.KOSSIAKOFF JRNL TITL X-RAY STRUCTURES OF THE ANTIGEN-BINDING DOMAINS FROM THREE JRNL TITL 2 VARIANTS OF HUMANIZED ANTI-P185HER2 ANTIBODY 4D5 AND JRNL TITL 3 COMPARISON WITH MOLECULAR MODELING. JRNL REF J.MOL.BIOL. V. 229 969 1993 JRNL REFN ISSN 0022-2836 JRNL PMID 8095303 JRNL DOI 10.1006/JMBI.1993.1099 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.CARTER,L.PRESTA,C.M.GORMAN,J.B.RIDGWAY,D.HENNER, REMARK 1 AUTH 2 W.L.T.WONG,A.M.ROWLAND,C.KOTTS,M.E.CARVER,H.M.SHEPARD REMARK 1 TITL HUMANIZATION OF AN ANTI-P185-HER2 ANTIBODY FOR HUMAN CANCER REMARK 1 TITL 2 THERAPY REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 89 4285 1992 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3521 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 3.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FVC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.70000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE TWO MOLECULES IN THE ASYMMETRIC UNIT. THE LIGHT REMARK 300 AND HEAVY CHAINS OF MOLECULE 1 ARE DENOTED BY CHAIN REMARK 300 IDENTIFIERS *A* AND *B*. THE LIGHT AND HEAVY CHAINS OF REMARK 300 MOLECULE 2 ARE DENOTED BY THE CHAIN IDENTIFIERS *C* AND REMARK 300 *D*. REMARK 300 REMARK 300 THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR CHAINS *A* AND *B* WHEN REMARK 300 APPLIED TO CHAINS *C* AND *D*. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR C 109 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 108 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 1 CG CD OE1 OE2 REMARK 480 GLN C 3 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 91 NE2 HIS A 91 CD2 -0.069 REMARK 500 HIS D 35 NE2 HIS D 35 CD2 -0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 1 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 ARG A 18 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 18 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 CYS A 23 CA - CB - SG ANGL. DEV. = -12.4 DEGREES REMARK 500 TRP A 35 CD1 - CG - CD2 ANGL. DEV. = 8.4 DEGREES REMARK 500 TRP A 35 CG - CD1 - NE1 ANGL. DEV. = -7.2 DEGREES REMARK 500 TRP A 35 CE2 - CD2 - CG ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP A 35 CG - CD2 - CE3 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 THR A 69 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 TYR A 86 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 19 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 19 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ILE B 29 CA - CB - CG1 ANGL. DEV. = -11.8 DEGREES REMARK 500 TRP B 36 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP B 36 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 LYS B 43 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 TRP B 47 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP B 47 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 TRP B 47 CG - CD2 - CE3 ANGL. DEV. = 6.4 DEGREES REMARK 500 VAL B 48 CG1 - CB - CG2 ANGL. DEV. = -10.6 DEGREES REMARK 500 TYR B 52 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 TYR B 57 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 VAL B 64 N - CA - CB ANGL. DEV. = -16.0 DEGREES REMARK 500 TYR B 80 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 MET B 83 CG - SD - CE ANGL. DEV. = -13.5 DEGREES REMARK 500 ARG B 98 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 98 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TRP B 99 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP B 99 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 TRP B 110 CD1 - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TRP B 110 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 LEU C 11 CA - CB - CG ANGL. DEV. = 24.3 DEGREES REMARK 500 ARG C 24 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG C 24 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 VAL C 29 N - CA - CB ANGL. DEV. = -14.4 DEGREES REMARK 500 TRP C 35 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP C 35 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 TRP C 35 CG - CD2 - CE3 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR C 49 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLY C 57 CA - C - N ANGL. DEV. = 13.3 DEGREES REMARK 500 TYR C 92 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR D 33 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG D 38 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 TRP D 47 CD1 - CG - CD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 TRP D 47 CG - CD1 - NE1 ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP D 47 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 TYR D 57 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG D 59 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 TYR D 60 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 57 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 -121.56 67.70 REMARK 500 ALA A 51 -13.57 54.78 REMARK 500 SER A 52 17.85 -157.08 REMARK 500 SER A 60 -3.67 -59.72 REMARK 500 SER A 77 94.57 -168.16 REMARK 500 TYR B 105 42.42 -105.90 REMARK 500 ASN C 30 -126.43 60.04 REMARK 500 ALA C 32 65.00 -67.60 REMARK 500 ALA C 51 -22.13 50.13 REMARK 500 SER C 52 11.17 -152.09 REMARK 500 ALA C 84 -168.80 -165.39 REMARK 500 VAL D 2 107.34 113.04 REMARK 500 ASN D 55 3.84 -150.97 REMARK 500 ALA D 92 168.94 178.90 REMARK 500 ASP D 102 117.39 0.76 REMARK 500 SER D 119 -50.44 -132.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 57 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUE NUMBERING IS SEQUENTIAL WITHIN EACH CHAIN. THE REMARK 999 SEQUENTIAL NUMBERING OF THE LIGHT CHAIN CORRESPONDS TO THE REMARK 999 KABAT NUMBERING SCHEME. THE FOLLOWING IS THE RELATIONSHIP REMARK 999 OF THE SEQUENTIAL NUMBERING SCHEME OF THE HEAVY CHAIN TO REMARK 999 THE KABAT NUMBERING SCHEME: REMARK 999 REMARK 999 ENTRY KABAT REMARK 999 1-52 1-52 REMARK 999 53 52A REMARK 999 54-83 53-82 REMARK 999 84-86 82A,82B,82C REMARK 999 87-104 83-100 REMARK 999 105-107 100A,100B,100C REMARK 999 108-120 101-113 DBREF 1FVC A 1 109 GB 185985 AAA59089 23 132 DBREF 1FVC C 1 109 GB 185985 AAA59089 23 132 DBREF 1FVC B 1 120 PDB 1FVC 1FVC 1 120 DBREF 1FVC D 1 120 PDB 1FVC 1FVC 1 120 SEQADV 1FVC ASP A 28 GB 185985 SER 50 CONFLICT SEQADV 1FVC VAL A 29 GB 185985 ILE 51 CONFLICT SEQADV 1FVC ASN A 30 GB 185985 SER 52 CONFLICT SEQADV 1FVC THR A 31 GB 185985 SER 53 CONFLICT SEQADV 1FVC ALA A 32 GB 185985 TYR 54 CONFLICT SEQADV 1FVC VAL A 33 GB 185985 LEU 55 CONFLICT SEQADV 1FVC ALA A 34 GB 185985 ASN 56 CONFLICT SEQADV 1FVC SER A 50 GB 185985 ALA 72 CONFLICT SEQADV 1FVC PHE A 53 GB 185985 SER 75 CONFLICT SEQADV 1FVC TYR A 55 GB 185985 GLN 77 CONFLICT SEQADV 1FVC ARG A 66 GB 185985 GLY 88 CONFLICT SEQADV 1FVC HIS A 91 GB 185985 SER 113 CONFLICT SEQADV 1FVC THR A 93 GB 185985 SER 115 CONFLICT SEQADV 1FVC A GB 185985 TRP 119 DELETION SEQADV 1FVC ASP C 28 GB 185985 SER 50 CONFLICT SEQADV 1FVC VAL C 29 GB 185985 ILE 51 CONFLICT SEQADV 1FVC ASN C 30 GB 185985 SER 52 CONFLICT SEQADV 1FVC THR C 31 GB 185985 SER 53 CONFLICT SEQADV 1FVC ALA C 32 GB 185985 TYR 54 CONFLICT SEQADV 1FVC VAL C 33 GB 185985 LEU 55 CONFLICT SEQADV 1FVC ALA C 34 GB 185985 ASN 56 CONFLICT SEQADV 1FVC SER C 50 GB 185985 ALA 72 CONFLICT SEQADV 1FVC PHE C 53 GB 185985 SER 75 CONFLICT SEQADV 1FVC TYR C 55 GB 185985 GLN 77 CONFLICT SEQADV 1FVC ARG C 66 GB 185985 GLY 88 CONFLICT SEQADV 1FVC HIS C 91 GB 185985 SER 113 CONFLICT SEQADV 1FVC THR C 93 GB 185985 SER 115 CONFLICT SEQADV 1FVC C GB 185985 TRP 119 DELETION SEQRES 1 A 109 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 A 109 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 A 109 GLN ASP VAL ASN THR ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 A 109 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 A 109 PHE LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 A 109 ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 A 109 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN HIS SEQRES 8 A 109 TYR THR THR PRO PRO THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 A 109 GLU ILE LYS ARG THR SEQRES 1 B 120 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 120 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 120 PHE ASN ILE LYS ASP THR TYR ILE HIS TRP VAL ARG GLN SEQRES 4 B 120 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG ILE TYR SEQRES 5 B 120 PRO THR ASN GLY TYR THR ARG TYR ALA ASP SER VAL LYS SEQRES 6 B 120 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 B 120 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 B 120 ALA VAL TYR TYR CYS SER ARG TRP GLY GLY ASP GLY PHE SEQRES 9 B 120 TYR ALA MET ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 B 120 VAL SER SER SEQRES 1 C 109 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 C 109 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 C 109 GLN ASP VAL ASN THR ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 C 109 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 C 109 PHE LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 C 109 ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 C 109 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN HIS SEQRES 8 C 109 TYR THR THR PRO PRO THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 C 109 GLU ILE LYS ARG THR SEQRES 1 D 120 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 120 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 120 PHE ASN ILE LYS ASP THR TYR ILE HIS TRP VAL ARG GLN SEQRES 4 D 120 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG ILE TYR SEQRES 5 D 120 PRO THR ASN GLY TYR THR ARG TYR ALA ASP SER VAL LYS SEQRES 6 D 120 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 D 120 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 D 120 ALA VAL TYR TYR CYS SER ARG TRP GLY GLY ASP GLY PHE SEQRES 9 D 120 TYR ALA MET ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 D 120 VAL SER SER FORMUL 5 HOH *126(H2 O) HELIX 1 1 GLN A 79 PHE A 83 5 5 HELIX 2 2 ARG B 87 THR B 91 5 5 HELIX 3 3 GLN C 79 PHE C 83 5 5 HELIX 4 4 ARG D 87 THR D 91 5 5 SHEET 1 A1 4 GLN A 3 SER A 7 0 SHEET 2 A1 4 VAL A 19 ALA A 25 -1 O THR A 22 N SER A 7 SHEET 3 A1 4 ASP A 70 ILE A 75 -1 O PHE A 71 N CYS A 23 SHEET 4 A1 4 ARG A 61 SER A 67 -1 N SER A 63 O THR A 74 SHEET 1 A2 6 SER A 9 ALA A 13 0 SHEET 2 A2 6 THR A 97 GLU A 105 1 O LYS A 103 N LEU A 11 SHEET 3 A2 6 THR A 85 HIS A 91 -1 N GLN A 90 O THR A 97 SHEET 4 A2 6 ALA A 32 GLN A 38 -1 O TYR A 36 O TYR A 87 SHEET 5 A2 6 LYS A 45 ILE A 48 -1 N LYS A 45 O GLN A 37 SHEET 6 A2 6 PHE A 53 TYR A 55 -1 N PHE A 53 O ILE A 48 SHEET 1 B1 4 GLN B 3 SER B 7 0 SHEET 2 B1 4 GLY B 16 SER B 25 -1 O ALA B 23 O VAL B 5 SHEET 3 B1 4 ASN B 77 SER B 85 -1 N ALA B 79 O CYS B 22 SHEET 4 B1 4 ARG B 67 ASP B 73 -1 N SER B 71 O TYR B 80 SHEET 1 B2 6 GLY B 10 VAL B 12 0 SHEET 2 B2 6 TYR B 109 SER B 119 1 N THR B 117 O GLY B 10 SHEET 3 B2 6 ALA B 92 TRP B 99 -1 N TYR B 94 O THR B 114 SHEET 4 B2 6 TYR B 33 ARG B 38 -1 O HIS B 35 N SER B 97 SHEET 5 B2 6 GLU B 46 TYR B 52 -1 O ALA B 49 N TRP B 36 SHEET 6 B2 6 TYR B 57 ALA B 61 -1 O ARG B 59 O ARG B 50 SHEET 1 C1 4 GLN C 3 SER C 7 0 SHEET 2 C1 4 VAL C 19 SER C 26 -1 N THR C 22 O SER C 7 SHEET 3 C1 4 THR C 69 ILE C 75 -1 N LEU C 73 O ILE C 21 SHEET 4 C1 4 ARG C 61 SER C 67 -1 O SER C 63 N THR C 74 SHEET 1 C2 6 SER C 9 ALA C 13 0 SHEET 2 C2 6 THR C 97 LYS C 107 1 N GLU C 105 O LEU C 11 SHEET 3 C2 6 ALA C 84 GLN C 90 -1 N TYR C 86 O THR C 102 SHEET 4 C2 6 VAL C 33 GLN C 38 -1 N TYR C 36 O TYR C 87 SHEET 5 C2 6 LEU C 47 SER C 50 -1 N SER C 50 O VAL C 33 SHEET 6 C2 6 PHE C 53 TYR C 55 -1 N PHE C 53 O TYR C 49 SHEET 1 D1 4 GLN D 3 SER D 7 0 SHEET 2 D1 4 GLY D 16 SER D 25 -1 N SER D 21 O SER D 7 SHEET 3 D1 4 ASN D 77 SER D 85 -1 N LEU D 81 O LEU D 20 SHEET 4 D1 4 THR D 69 ASP D 73 -1 O THR D 69 N GLN D 82 SHEET 1 D2 6 GLY D 10 VAL D 12 0 SHEET 2 D2 6 TYR D 109 SER D 119 1 N THR D 117 O GLY D 10 SHEET 3 D2 6 ALA D 92 ARG D 98 -1 N ARG D 98 O TYR D 109 SHEET 4 D2 6 ILE D 34 GLN D 39 -1 N HIS D 35 O SER D 97 SHEET 5 D2 6 GLU D 46 TYR D 52 -1 N ILE D 51 O ILE D 34 SHEET 6 D2 6 GLY D 56 ALA D 61 -1 N ALA D 61 O VAL D 48 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.00 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.02 SSBOND 3 CYS C 23 CYS C 88 1555 1555 2.00 SSBOND 4 CYS D 22 CYS D 96 1555 1555 2.00 CISPEP 1 SER A 7 PRO A 8 0 -3.19 CISPEP 2 THR A 94 PRO A 95 0 -3.61 CISPEP 3 SER C 7 PRO C 8 0 -4.03 CISPEP 4 THR C 94 PRO C 95 0 -9.95 CRYST1 37.600 63.400 90.200 90.00 98.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026596 0.000000 0.003833 0.00000 SCALE2 0.000000 0.015773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011201 0.00000 MTRIX1 1 -0.997760 0.036730 0.055950 36.96113 1 MTRIX2 1 0.037030 -0.999300 -0.004350 27.31182 1 MTRIX3 1 0.055760 -0.006410 0.998420 -0.46846 1