PDB Short entry for 1G38 HEADER TRANSFERASE/DNA 23-OCT-00 1G38 TITLE ADENINE-SPECIFIC METHYLTRANSFERASE M. TAQ I/DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*C)-3'; COMPND 3 CHAIN: B, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3'; COMPND 7 CHAIN: C, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MODIFICATION METHYLASE TAQI; COMPND 11 CHAIN: A, D; COMPND 12 FRAGMENT: RESIDUES 21 - 413; COMPND 13 SYNONYM: ADENINE-N6-DNA-METHYLTRANSFERASE TAQI; COMPND 14 EC: 2.1.1.72; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 7 ORGANISM_TAXID: 271; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: ER2267; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PA1-MTAQ-A49A KEYWDS TRANSFERASE, DNA, METHYLTRANSFERASE, RESTRICTION SYSTEM, TRANSFERASE- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.GOEDECKE,M.PIGNOT,R.S.GOODY,A.J.SCHEIDIG,E.WEINHOLD REVDAT 7 09-AUG-23 1G38 1 REMARK LINK REVDAT 6 04-OCT-17 1G38 1 REMARK REVDAT 5 28-AUG-13 1G38 1 HETATM VERSN REVDAT 4 24-FEB-09 1G38 1 VERSN REVDAT 3 01-APR-03 1G38 1 JRNL REVDAT 2 12-MAR-01 1G38 1 SEQRES LINK ATOM REVDAT 1 05-MAR-01 1G38 0 JRNL AUTH K.GOEDECKE,M.PIGNOT,R.S.GOODY,A.J.SCHEIDIG,E.WEINHOLD JRNL TITL STRUCTURE OF THE N6-ADENINE DNA METHYLTRANSFERASE M.TAQI IN JRNL TITL 2 COMPLEX WITH DNA AND A COFACTOR ANALOG. JRNL REF NAT.STRUCT.BIOL. V. 8 121 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11175899 JRNL DOI 10.1038/84104 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.SCHLUCKEBIER,M.KOZAK,N.BLEIMLING,E.WEINHOLD,W.SAENGER REMARK 1 TITL DIFFERENTIAL BINDING OF S-ADENOSYLMETHIONINE, REMARK 1 TITL 2 S-ADENOSYLHOMOCYSTEINE AND SINEFUNGIN TO THE REMARK 1 TITL 3 ADENINE-SPECIFIC DNA METHYLTRANSFERASE M. TAQ I REMARK 1 REF J.MOL.BIOL. V. 265 56 1997 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1996.0711 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.1 REMARK 3 NUMBER OF REFLECTIONS : 54457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : CNS THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5538 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6240 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 718 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6378 REMARK 3 NUCLEIC ACID ATOMS : 810 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 496 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.170 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP_NEW.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA_NEW.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54457 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : 0.08800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.19500 REMARK 200 R SYM FOR SHELL (I) : 0.19500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2ADM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% ISOPROPANOL, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.32500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 59 CG CD OE1 OE2 REMARK 480 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 224 CG CD OE1 OE2 REMARK 480 GLU A 249 CG CD OE1 OE2 REMARK 480 GLU A 362 CG CD OE1 OE2 REMARK 480 ARG A 365 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 378 CG CD OE1 OE2 REMARK 480 ARG A 385 CG CD NE CZ NH1 NH2 REMARK 480 ARG D 39 CG CD NE CZ NH1 NH2 REMARK 480 GLU D 59 CG CD OE1 OE2 REMARK 480 GLU D 224 CG CD OE1 OE2 REMARK 480 GLU D 248 CG CD OE1 OE2 REMARK 480 GLU D 249 CG CD OE1 OE2 REMARK 480 GLU D 347 CG CD OE1 OE2 REMARK 480 GLU D 362 CG CD OE1 OE2 REMARK 480 ARG D 365 CG CD NE CZ NH1 NH2 REMARK 480 GLU D 378 CG CD OE1 OE2 REMARK 480 GLU D 408 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 601 O4' - C1' - C2' ANGL. DEV. = 3.1 DEGREES REMARK 500 DT E 602 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG E 605 O4' - C1' - C2' ANGL. DEV. = 4.6 DEGREES REMARK 500 DA E 606 O4' - C1' - C2' ANGL. DEV. = 4.5 DEGREES REMARK 500 DT E 607 O4' - C1' - C2' ANGL. DEV. = 3.6 DEGREES REMARK 500 DG E 608 O4' - C1' - C2' ANGL. DEV. = 3.4 DEGREES REMARK 500 DC F 703 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT F 705 O4' - C1' - C2' ANGL. DEV. = 4.2 DEGREES REMARK 500 DG F 707 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 LEU A 395 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 LEU D 395 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 49 -115.12 61.13 REMARK 500 ASP A 78 74.46 -158.01 REMARK 500 LYS A 116 -31.59 -131.02 REMARK 500 TYR A 140 -166.00 53.31 REMARK 500 ALA A 349 80.15 69.74 REMARK 500 GLU A 355 171.41 78.70 REMARK 500 ARG A 389 -123.59 38.41 REMARK 500 PRO A 393 43.75 -82.75 REMARK 500 ALA D 49 -117.03 57.42 REMARK 500 ASP D 78 77.15 -163.76 REMARK 500 TYR D 140 -159.69 60.44 REMARK 500 PRO D 287 -78.44 -34.75 REMARK 500 ALA D 349 77.48 62.69 REMARK 500 GLU D 355 166.52 77.39 REMARK 500 ARG D 389 -123.73 43.06 REMARK 500 PRO D 393 38.81 -82.50 REMARK 500 ARG D 406 -168.43 -57.45 REMARK 500 HIS D 412 47.79 -149.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA C 702 0.05 SIDE CHAIN REMARK 500 DT E 603 0.11 SIDE CHAIN REMARK 500 DA E 606 0.08 SIDE CHAIN REMARK 500 DG E 608 0.06 SIDE CHAIN REMARK 500 DG F 701 0.07 SIDE CHAIN REMARK 500 DA F 702 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NEA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NEA D 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ADM RELATED DB: PDB REMARK 900 ADENINE-N6-DNA-METHYLTRANSFERASE TAQI DBREF 1G38 A 21 413 UNP P14385 MTTA_THEAQ 21 413 DBREF 1G38 D 21 413 UNP P14385 MTTA_THEAQ 21 413 DBREF 1G38 B 601 610 PDB 1G38 1G38 601 610 DBREF 1G38 C 701 710 PDB 1G38 1G38 701 710 DBREF 1G38 E 601 610 PDB 1G38 1G38 601 610 DBREF 1G38 F 701 710 PDB 1G38 1G38 701 710 SEQRES 1 B 10 DG DT DT DC DG DA DT DG DT DC SEQRES 1 C 10 DG DA DC DA DT DC DG 6MA DA DC SEQRES 1 E 10 DG DT DT DC DG DA DT DG DT DC SEQRES 1 F 10 DG DA DC DA DT DC DG 6MA DA DC SEQRES 1 A 393 VAL GLU THR PRO PRO GLU VAL VAL ASP PHE MET VAL SER SEQRES 2 A 393 LEU ALA GLU ALA PRO ARG GLY GLY ARG VAL LEU GLU PRO SEQRES 3 A 393 ALA CYS ALA HIS GLY PRO PHE LEU ARG ALA PHE ARG GLU SEQRES 4 A 393 ALA HIS GLY THR GLY TYR ARG PHE VAL GLY VAL GLU ILE SEQRES 5 A 393 ASP PRO LYS ALA LEU ASP LEU PRO PRO TRP ALA GLU GLY SEQRES 6 A 393 ILE LEU ALA ASP PHE LEU LEU TRP GLU PRO GLY GLU ALA SEQRES 7 A 393 PHE ASP LEU ILE LEU GLY ASN PRO PRO TYR GLY ILE VAL SEQRES 8 A 393 GLY GLU ALA SER LYS TYR PRO ILE HIS VAL PHE LYS ALA SEQRES 9 A 393 VAL LYS ASP LEU TYR LYS LYS ALA PHE SER THR TRP LYS SEQRES 10 A 393 GLY LYS TYR ASN LEU TYR GLY ALA PHE LEU GLU LYS ALA SEQRES 11 A 393 VAL ARG LEU LEU LYS PRO GLY GLY VAL LEU VAL PHE VAL SEQRES 12 A 393 VAL PRO ALA THR TRP LEU VAL LEU GLU ASP PHE ALA LEU SEQRES 13 A 393 LEU ARG GLU PHE LEU ALA ARG GLU GLY LYS THR SER VAL SEQRES 14 A 393 TYR TYR LEU GLY GLU VAL PHE PRO GLN LYS LYS VAL SER SEQRES 15 A 393 ALA VAL VAL ILE ARG PHE GLN LYS SER GLY LYS GLY LEU SEQRES 16 A 393 SER LEU TRP ASP THR GLN GLU SER GLU SER GLY PHE THR SEQRES 17 A 393 PRO ILE LEU TRP ALA GLU TYR PRO HIS TRP GLU GLY GLU SEQRES 18 A 393 ILE ILE ARG PHE GLU THR GLU GLU THR ARG LYS LEU GLU SEQRES 19 A 393 ILE SER GLY MET PRO LEU GLY ASP LEU PHE HIS ILE ARG SEQRES 20 A 393 PHE ALA ALA ARG SER PRO GLU PHE LYS LYS HIS PRO ALA SEQRES 21 A 393 VAL ARG LYS GLU PRO GLY PRO GLY LEU VAL PRO VAL LEU SEQRES 22 A 393 THR GLY ARG ASN LEU LYS PRO GLY TRP VAL ASP TYR GLU SEQRES 23 A 393 LYS ASN HIS SER GLY LEU TRP MET PRO LYS GLU ARG ALA SEQRES 24 A 393 LYS GLU LEU ARG ASP PHE TYR ALA THR PRO HIS LEU VAL SEQRES 25 A 393 VAL ALA HIS THR LYS GLY THR ARG VAL VAL ALA ALA TRP SEQRES 26 A 393 ASP GLU ARG ALA TYR PRO TRP ARG GLU GLU PHE HIS LEU SEQRES 27 A 393 LEU PRO LYS GLU GLY VAL ARG LEU ASP PRO SER SER LEU SEQRES 28 A 393 VAL GLN TRP LEU ASN SER GLU ALA MET GLN LYS HIS VAL SEQRES 29 A 393 ARG THR LEU TYR ARG ASP PHE VAL PRO HIS LEU THR LEU SEQRES 30 A 393 ARG MET LEU GLU ARG LEU PRO VAL ARG ARG GLU TYR GLY SEQRES 31 A 393 PHE HIS THR SEQRES 1 D 393 VAL GLU THR PRO PRO GLU VAL VAL ASP PHE MET VAL SER SEQRES 2 D 393 LEU ALA GLU ALA PRO ARG GLY GLY ARG VAL LEU GLU PRO SEQRES 3 D 393 ALA CYS ALA HIS GLY PRO PHE LEU ARG ALA PHE ARG GLU SEQRES 4 D 393 ALA HIS GLY THR GLY TYR ARG PHE VAL GLY VAL GLU ILE SEQRES 5 D 393 ASP PRO LYS ALA LEU ASP LEU PRO PRO TRP ALA GLU GLY SEQRES 6 D 393 ILE LEU ALA ASP PHE LEU LEU TRP GLU PRO GLY GLU ALA SEQRES 7 D 393 PHE ASP LEU ILE LEU GLY ASN PRO PRO TYR GLY ILE VAL SEQRES 8 D 393 GLY GLU ALA SER LYS TYR PRO ILE HIS VAL PHE LYS ALA SEQRES 9 D 393 VAL LYS ASP LEU TYR LYS LYS ALA PHE SER THR TRP LYS SEQRES 10 D 393 GLY LYS TYR ASN LEU TYR GLY ALA PHE LEU GLU LYS ALA SEQRES 11 D 393 VAL ARG LEU LEU LYS PRO GLY GLY VAL LEU VAL PHE VAL SEQRES 12 D 393 VAL PRO ALA THR TRP LEU VAL LEU GLU ASP PHE ALA LEU SEQRES 13 D 393 LEU ARG GLU PHE LEU ALA ARG GLU GLY LYS THR SER VAL SEQRES 14 D 393 TYR TYR LEU GLY GLU VAL PHE PRO GLN LYS LYS VAL SER SEQRES 15 D 393 ALA VAL VAL ILE ARG PHE GLN LYS SER GLY LYS GLY LEU SEQRES 16 D 393 SER LEU TRP ASP THR GLN GLU SER GLU SER GLY PHE THR SEQRES 17 D 393 PRO ILE LEU TRP ALA GLU TYR PRO HIS TRP GLU GLY GLU SEQRES 18 D 393 ILE ILE ARG PHE GLU THR GLU GLU THR ARG LYS LEU GLU SEQRES 19 D 393 ILE SER GLY MET PRO LEU GLY ASP LEU PHE HIS ILE ARG SEQRES 20 D 393 PHE ALA ALA ARG SER PRO GLU PHE LYS LYS HIS PRO ALA SEQRES 21 D 393 VAL ARG LYS GLU PRO GLY PRO GLY LEU VAL PRO VAL LEU SEQRES 22 D 393 THR GLY ARG ASN LEU LYS PRO GLY TRP VAL ASP TYR GLU SEQRES 23 D 393 LYS ASN HIS SER GLY LEU TRP MET PRO LYS GLU ARG ALA SEQRES 24 D 393 LYS GLU LEU ARG ASP PHE TYR ALA THR PRO HIS LEU VAL SEQRES 25 D 393 VAL ALA HIS THR LYS GLY THR ARG VAL VAL ALA ALA TRP SEQRES 26 D 393 ASP GLU ARG ALA TYR PRO TRP ARG GLU GLU PHE HIS LEU SEQRES 27 D 393 LEU PRO LYS GLU GLY VAL ARG LEU ASP PRO SER SER LEU SEQRES 28 D 393 VAL GLN TRP LEU ASN SER GLU ALA MET GLN LYS HIS VAL SEQRES 29 D 393 ARG THR LEU TYR ARG ASP PHE VAL PRO HIS LEU THR LEU SEQRES 30 D 393 ARG MET LEU GLU ARG LEU PRO VAL ARG ARG GLU TYR GLY SEQRES 31 D 393 PHE HIS THR MODRES 1G38 6MA C 708 A MODRES 1G38 6MA F 708 A HET 6MA C 708 22 HET 6MA F 708 22 HET NEA A 500 22 HET NEA D 501 22 HETNAM 6MA N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE HETNAM NEA 5'-DEOXY-5'-[2-(AMINO)ETHYLTHIO]ADENOSINE FORMUL 2 6MA 2(C11 H16 N5 O6 P) FORMUL 7 NEA 2(C12 H18 N6 O3 S) FORMUL 9 HOH *496(H2 O) HELIX 1 1 PRO A 24 SER A 33 1 10 HELIX 2 2 GLY A 51 GLY A 62 1 12 HELIX 3 3 ASP A 89 TRP A 93 5 5 HELIX 4 4 PHE A 122 PHE A 133 1 12 HELIX 5 5 ASN A 141 LEU A 153 1 13 HELIX 6 6 THR A 167 VAL A 170 5 4 HELIX 7 7 LEU A 171 ASP A 173 5 3 HELIX 8 8 PHE A 174 GLY A 185 1 12 HELIX 9 9 THR A 247 ILE A 255 1 9 HELIX 10 10 LEU A 260 LEU A 263 1 4 HELIX 11 11 ARG A 271 HIS A 278 1 8 HELIX 12 12 THR A 294 ARG A 296 5 3 HELIX 13 13 GLU A 317 LEU A 322 5 6 HELIX 14 14 ARG A 323 THR A 328 5 6 HELIX 15 15 ASP A 367 ASN A 376 1 10 HELIX 16 16 SER A 377 ARG A 389 1 13 HELIX 17 17 THR A 396 ARG A 402 1 7 HELIX 18 18 PRO D 24 ALA D 35 1 12 HELIX 19 19 GLY D 51 GLY D 62 1 12 HELIX 20 20 ASP D 89 TRP D 93 5 5 HELIX 21 21 PHE D 122 PHE D 133 1 12 HELIX 22 22 ASN D 141 LEU D 153 1 13 HELIX 23 23 THR D 167 VAL D 170 5 4 HELIX 24 24 LEU D 171 ASP D 173 5 3 HELIX 25 25 PHE D 174 GLY D 185 1 12 HELIX 26 26 THR D 247 GLY D 257 1 11 HELIX 27 27 ARG D 271 LYS D 277 1 7 HELIX 28 28 THR D 294 ARG D 296 5 3 HELIX 29 29 PRO D 315 LEU D 322 5 8 HELIX 30 30 ARG D 323 THR D 328 5 6 HELIX 31 31 ASP D 367 ASN D 376 1 10 HELIX 32 32 SER D 377 ARG D 389 1 13 HELIX 33 33 THR D 396 ARG D 402 1 7 SHEET 1 A 9 GLU A 84 LEU A 87 0 SHEET 2 A 9 ARG A 66 GLU A 71 1 O PHE A 67 N GLU A 84 SHEET 3 A 9 ARG A 42 PRO A 46 1 O VAL A 43 N VAL A 68 SHEET 4 A 9 PHE A 99 GLY A 104 1 N ASP A 100 O ARG A 42 SHEET 5 A 9 LEU A 154 PRO A 165 1 N LYS A 155 O PHE A 99 SHEET 6 A 9 ALA A 203 GLN A 209 -1 N VAL A 204 O VAL A 164 SHEET 7 A 9 LYS A 186 GLY A 193 -1 O LYS A 186 N GLN A 209 SHEET 8 A 9 LEU A 215 SER A 223 1 O SER A 216 N VAL A 189 SHEET 9 A 9 GLY A 226 TYR A 235 -1 O GLY A 226 N SER A 223 SHEET 1 B 2 MET A 258 PRO A 259 0 SHEET 2 B 2 PRO A 404 VAL A 405 -1 O VAL A 405 N MET A 258 SHEET 1 C 4 PHE A 264 PHE A 268 0 SHEET 2 C 4 PHE A 356 PRO A 360 -1 N HIS A 357 O ARG A 267 SHEET 3 C 4 HIS A 330 VAL A 333 -1 O LEU A 331 N LEU A 358 SHEET 4 C 4 ALA A 343 ASP A 346 -1 O ALA A 344 N VAL A 332 SHEET 1 D 2 LEU A 289 PRO A 291 0 SHEET 2 D 2 TRP A 313 PRO A 315 -1 N MET A 314 O VAL A 290 SHEET 1 E 2 LEU A 298 LYS A 299 0 SHEET 2 E 2 TRP A 302 VAL A 303 -1 O TRP A 302 N LYS A 299 SHEET 1 F 2 VAL A 364 LEU A 366 0 SHEET 2 F 2 GLY A 410 HIS A 412 -1 N PHE A 411 O ARG A 365 SHEET 1 G 9 ALA D 83 LEU D 87 0 SHEET 2 G 9 TYR D 65 GLU D 71 1 O PHE D 67 N GLU D 84 SHEET 3 G 9 GLY D 41 PRO D 46 1 O GLY D 41 N ARG D 66 SHEET 4 G 9 PHE D 99 GLY D 104 1 N ASP D 100 O ARG D 42 SHEET 5 G 9 LEU D 154 PRO D 165 1 N LYS D 155 O PHE D 99 SHEET 6 G 9 ALA D 203 GLN D 209 -1 N VAL D 204 O VAL D 164 SHEET 7 G 9 LYS D 186 GLY D 193 -1 O LYS D 186 N GLN D 209 SHEET 8 G 9 LEU D 215 GLU D 222 1 O SER D 216 N VAL D 189 SHEET 9 G 9 PHE D 227 TYR D 235 -1 N THR D 228 O GLN D 221 SHEET 1 H 2 MET D 258 PRO D 259 0 SHEET 2 H 2 PRO D 404 VAL D 405 -1 O VAL D 405 N MET D 258 SHEET 1 I 4 PHE D 264 PHE D 268 0 SHEET 2 I 4 PHE D 356 PRO D 360 -1 N HIS D 357 O ARG D 267 SHEET 3 I 4 HIS D 330 VAL D 333 -1 O LEU D 331 N LEU D 358 SHEET 4 I 4 ALA D 343 ASP D 346 -1 O ALA D 344 N VAL D 332 SHEET 1 J 2 VAL D 290 PRO D 291 0 SHEET 2 J 2 TRP D 313 MET D 314 -1 O MET D 314 N VAL D 290 SHEET 1 K 2 LEU D 298 LYS D 299 0 SHEET 2 K 2 TRP D 302 VAL D 303 -1 O TRP D 302 N LYS D 299 SHEET 1 L 2 ARG D 365 LEU D 366 0 SHEET 2 L 2 GLY D 410 PHE D 411 -1 O PHE D 411 N ARG D 365 LINK O3' DG C 707 P 6MA C 708 1555 1555 1.61 LINK O3' 6MA C 708 P DA C 709 1555 1555 1.60 LINK O3' DG F 707 P 6MA F 708 1555 1555 1.59 LINK O3' 6MA F 708 P DA F 709 1555 1555 1.61 SITE 1 AC1 16 ALA A 47 GLU A 71 ILE A 72 ASP A 73 SITE 2 AC1 16 ALA A 88 ASP A 89 PHE A 90 ASN A 105 SITE 3 AC1 16 PRO A 107 HOH A 503 HOH A 504 HOH A 565 SITE 4 AC1 16 HOH A 581 HOH A 667 HOH A 699 DA B 606 SITE 1 AC2 14 VAL D 21 ALA D 47 GLU D 71 ILE D 72 SITE 2 AC2 14 ALA D 88 ASP D 89 PHE D 90 ASN D 105 SITE 3 AC2 14 PRO D 107 PHE D 146 HOH D 515 HOH D 622 SITE 4 AC2 14 HOH D 658 DA E 606 CRYST1 59.500 68.650 114.430 90.00 92.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016807 0.000000 0.000646 0.00000 SCALE2 0.000000 0.014567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008745 0.00000