PDB Short entry for 1G3K HEADER HYDROLASE 24-OCT-00 1G3K TITLE CRYSTAL STRUCTURE OF THE H. INFLUENZAE PROTEASE HSLV AT 1.9 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT PROTEASE HSLV; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.4.99.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.SOUSA,D.B.MCKAY REVDAT 5 03-APR-24 1G3K 1 REMARK REVDAT 4 07-FEB-24 1G3K 1 REMARK LINK REVDAT 3 13-JUL-11 1G3K 1 VERSN REVDAT 2 24-FEB-09 1G3K 1 VERSN REVDAT 1 22-NOV-00 1G3K 0 JRNL AUTH M.C.SOUSA,C.B.TRAME,H.TSURUTA,S.M.WILBANKS,V.S.REDDY, JRNL AUTH 2 D.B.MCKAY JRNL TITL CRYSTAL AND SOLUTION STRUCTURES OF AN HSLUV JRNL TITL 2 PROTEASE-CHAPERONE COMPLEX. JRNL REF CELL(CAMBRIDGE,MASS.) V. 103 633 2000 JRNL REFN ISSN 0092-8674 JRNL PMID 11106733 JRNL DOI 10.1016/S0092-8674(00)00166-5 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3798393.720 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4870 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7120 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 847 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3837 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.84000 REMARK 3 B22 (A**2) : -3.77000 REMARK 3 B33 (A**2) : -2.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 38.17 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G3K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48317 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.17900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: E. COLI HSLV AT 3.8A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, PEG 400, HCL TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.50900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.89950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.08950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.50900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.89950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.08950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.50900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.89950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.08950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.50900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.89950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.08950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DODECAMER WHICH CAN BE REMARK 300 CONSTRUCTED AS FOLLOWS: 1) TAKE CHAINS A,B AND C, APPLY SYMM OP X,- REMARK 300 Y,-Z, AND TRANSLATE 0 0 1 2) FINALLY TAKE ALL SIX CHAINS AND APPLY REMARK 300 SYMM OP -X,-Y,Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 29490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 71480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -257.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 126.17900 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 126.17900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 174 REMARK 465 ASN B 174 REMARK 465 ASN C 174 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 MET A 66 CG SD CE REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 35 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 68 CG CD OE1 NE2 REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 GLU B 117 CG CD OE1 OE2 REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 MET C 27 CG SD CE REMARK 470 ASN C 39 CG OD1 ND2 REMARK 470 ARG C 62 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 ARG C 86 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 92 CG CD OE1 OE2 REMARK 470 GLU C 100 CG CD OE1 OE2 REMARK 470 GLU C 142 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 2244 O HOH C 2244 2555 1.49 REMARK 500 O HOH B 1264 O HOH B 1265 3556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 104 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 ARG C 135 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 111 -139.23 58.33 REMARK 500 ASN A 164 -168.48 -106.64 REMARK 500 ASN B 164 -168.00 -109.41 REMARK 500 ASN C 164 -165.49 -105.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR C 129 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 HOH 201-270 IS ASSOCIATED WITH CHAIN A. REMARK 600 HOH 1201-1269 IS ASSOCIATED WITH CHAIN B. REMARK 600 HOH 2201-2260 IS ASSOCIATED WITH CHAIN C. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 157 O REMARK 620 2 CYS A 160 O 99.6 REMARK 620 3 THR A 163 O 93.7 89.7 REMARK 620 4 HOH A 236 O 155.9 103.8 80.8 REMARK 620 5 HOH A 237 O 84.1 172.0 97.1 73.4 REMARK 620 6 HOH A 238 O 89.9 88.0 176.0 96.5 84.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 157 O REMARK 620 2 CYS B 160 O 102.1 REMARK 620 3 THR B 163 O 96.7 87.1 REMARK 620 4 HOH B1234 O 155.4 102.0 80.1 REMARK 620 5 HOH B1235 O 91.1 88.3 171.6 94.0 REMARK 620 6 HOH B1236 O 79.1 171.6 101.1 77.7 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C 157 O REMARK 620 2 CYS C 160 O 100.6 REMARK 620 3 THR C 163 O 94.0 90.1 REMARK 620 4 HOH C2238 O 97.3 93.3 167.4 REMARK 620 5 HOH C2239 O 150.5 107.2 76.5 90.9 REMARK 620 6 HOH C2254 O 78.0 172.9 97.0 80.1 75.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G3I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PROTEASE-CHAPERONE COMPLEX HSLUV FROM H. REMARK 900 INFLUENZAE AT 3.4 A RESOLUTION REMARK 900 RELATED ID: 1G41 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HSLU HAEMOPHILUS INFLUENZAE DBREF 1G3K A 1 174 UNP P43772 HSLV_HAEIN 1 174 DBREF 1G3K B 1 174 UNP P43772 HSLV_HAEIN 1 174 DBREF 1G3K C 1 174 UNP P43772 HSLV_HAEIN 1 174 SEQRES 1 A 174 THR THR ILE VAL SER VAL ARG ARG ASN GLY GLN VAL VAL SEQRES 2 A 174 VAL GLY GLY ASP GLY GLN VAL SER LEU GLY ASN THR VAL SEQRES 3 A 174 MET LYS GLY ASN ALA ARG LYS VAL ARG ARG LEU TYR ASN SEQRES 4 A 174 GLY LYS VAL LEU ALA GLY PHE ALA GLY GLY THR ALA ASP SEQRES 5 A 174 ALA PHE THR LEU PHE GLU LEU PHE GLU ARG LYS LEU GLU SEQRES 6 A 174 MET HIS GLN GLY HIS LEU LEU LYS SER ALA VAL GLU LEU SEQRES 7 A 174 ALA LYS ASP TRP ARG THR ASP ARG ALA LEU ARG LYS LEU SEQRES 8 A 174 GLU ALA MET LEU ILE VAL ALA ASP GLU LYS GLU SER LEU SEQRES 9 A 174 ILE ILE THR GLY ILE GLY ASP VAL VAL GLN PRO GLU GLU SEQRES 10 A 174 ASP GLN ILE LEU ALA ILE GLY SER GLY GLY ASN TYR ALA SEQRES 11 A 174 LEU SER ALA ALA ARG ALA LEU VAL GLU ASN THR GLU LEU SEQRES 12 A 174 SER ALA HIS GLU ILE VAL GLU LYS SER LEU ARG ILE ALA SEQRES 13 A 174 GLY ASP ILE CYS VAL PHE THR ASN THR ASN PHE THR ILE SEQRES 14 A 174 GLU GLU LEU PRO ASN SEQRES 1 B 174 THR THR ILE VAL SER VAL ARG ARG ASN GLY GLN VAL VAL SEQRES 2 B 174 VAL GLY GLY ASP GLY GLN VAL SER LEU GLY ASN THR VAL SEQRES 3 B 174 MET LYS GLY ASN ALA ARG LYS VAL ARG ARG LEU TYR ASN SEQRES 4 B 174 GLY LYS VAL LEU ALA GLY PHE ALA GLY GLY THR ALA ASP SEQRES 5 B 174 ALA PHE THR LEU PHE GLU LEU PHE GLU ARG LYS LEU GLU SEQRES 6 B 174 MET HIS GLN GLY HIS LEU LEU LYS SER ALA VAL GLU LEU SEQRES 7 B 174 ALA LYS ASP TRP ARG THR ASP ARG ALA LEU ARG LYS LEU SEQRES 8 B 174 GLU ALA MET LEU ILE VAL ALA ASP GLU LYS GLU SER LEU SEQRES 9 B 174 ILE ILE THR GLY ILE GLY ASP VAL VAL GLN PRO GLU GLU SEQRES 10 B 174 ASP GLN ILE LEU ALA ILE GLY SER GLY GLY ASN TYR ALA SEQRES 11 B 174 LEU SER ALA ALA ARG ALA LEU VAL GLU ASN THR GLU LEU SEQRES 12 B 174 SER ALA HIS GLU ILE VAL GLU LYS SER LEU ARG ILE ALA SEQRES 13 B 174 GLY ASP ILE CYS VAL PHE THR ASN THR ASN PHE THR ILE SEQRES 14 B 174 GLU GLU LEU PRO ASN SEQRES 1 C 174 THR THR ILE VAL SER VAL ARG ARG ASN GLY GLN VAL VAL SEQRES 2 C 174 VAL GLY GLY ASP GLY GLN VAL SER LEU GLY ASN THR VAL SEQRES 3 C 174 MET LYS GLY ASN ALA ARG LYS VAL ARG ARG LEU TYR ASN SEQRES 4 C 174 GLY LYS VAL LEU ALA GLY PHE ALA GLY GLY THR ALA ASP SEQRES 5 C 174 ALA PHE THR LEU PHE GLU LEU PHE GLU ARG LYS LEU GLU SEQRES 6 C 174 MET HIS GLN GLY HIS LEU LEU LYS SER ALA VAL GLU LEU SEQRES 7 C 174 ALA LYS ASP TRP ARG THR ASP ARG ALA LEU ARG LYS LEU SEQRES 8 C 174 GLU ALA MET LEU ILE VAL ALA ASP GLU LYS GLU SER LEU SEQRES 9 C 174 ILE ILE THR GLY ILE GLY ASP VAL VAL GLN PRO GLU GLU SEQRES 10 C 174 ASP GLN ILE LEU ALA ILE GLY SER GLY GLY ASN TYR ALA SEQRES 11 C 174 LEU SER ALA ALA ARG ALA LEU VAL GLU ASN THR GLU LEU SEQRES 12 C 174 SER ALA HIS GLU ILE VAL GLU LYS SER LEU ARG ILE ALA SEQRES 13 C 174 GLY ASP ILE CYS VAL PHE THR ASN THR ASN PHE THR ILE SEQRES 14 C 174 GLU GLU LEU PRO ASN HET NA A 500 1 HET NA B 500 1 HET NA C 500 1 HETNAM NA SODIUM ION FORMUL 4 NA 3(NA 1+) FORMUL 7 HOH *198(H2 O) HELIX 1 1 GLY A 49 HIS A 67 1 19 HELIX 2 2 HIS A 70 ASP A 85 1 16 HELIX 3 3 ALA A 87 LEU A 91 5 5 HELIX 4 4 GLY A 126 THR A 141 1 16 HELIX 5 5 SER A 144 CYS A 160 1 17 HELIX 6 6 GLY B 49 HIS B 67 1 19 HELIX 7 7 HIS B 70 ASP B 85 1 16 HELIX 8 8 ALA B 87 LEU B 91 5 5 HELIX 9 9 GLY B 126 THR B 141 1 16 HELIX 10 10 SER B 144 CYS B 160 1 17 HELIX 11 11 GLY C 49 HIS C 67 1 19 HELIX 12 12 HIS C 70 ASP C 85 1 16 HELIX 13 13 ALA C 87 LEU C 91 5 5 HELIX 14 14 GLY C 126 THR C 141 1 16 HELIX 15 15 SER C 144 ASP C 158 1 15 SHEET 1 A 4 ILE A 120 ILE A 123 0 SHEET 2 A 4 ILE A 3 ARG A 8 -1 O ILE A 3 N ILE A 123 SHEET 3 A 4 GLN A 11 GLY A 16 -1 O GLN A 11 N ARG A 8 SHEET 4 A 4 THR A 168 LEU A 172 -1 O THR A 168 N GLY A 16 SHEET 1 B 2 VAL A 20 LEU A 22 0 SHEET 2 B 2 THR A 25 LYS A 28 -1 O THR A 25 N LEU A 22 SHEET 1 C 5 VAL A 34 LEU A 37 0 SHEET 2 C 5 VAL A 42 ALA A 47 -1 O VAL A 42 N LEU A 37 SHEET 3 C 5 MET A 94 ALA A 98 -1 O MET A 94 N ALA A 47 SHEET 4 C 5 SER A 103 THR A 107 -1 N LEU A 104 O VAL A 97 SHEET 5 C 5 ASP A 111 VAL A 113 -1 O ASP A 111 N THR A 107 SHEET 1 D 4 ILE B 120 ILE B 123 0 SHEET 2 D 4 ILE B 3 ARG B 8 -1 N ILE B 3 O ILE B 123 SHEET 3 D 4 GLN B 11 GLY B 16 -1 O GLN B 11 N ARG B 8 SHEET 4 D 4 THR B 168 LEU B 172 -1 O THR B 168 N GLY B 16 SHEET 1 E 2 VAL B 20 LEU B 22 0 SHEET 2 E 2 THR B 25 LYS B 28 -1 O THR B 25 N LEU B 22 SHEET 1 F 5 VAL B 34 LEU B 37 0 SHEET 2 F 5 VAL B 42 ALA B 47 -1 O VAL B 42 N LEU B 37 SHEET 3 F 5 MET B 94 ALA B 98 -1 O MET B 94 N ALA B 47 SHEET 4 F 5 SER B 103 THR B 107 -1 N LEU B 104 O VAL B 97 SHEET 5 F 5 VAL B 112 VAL B 113 -1 N VAL B 113 O ILE B 105 SHEET 1 G 4 ILE C 120 ILE C 123 0 SHEET 2 G 4 ILE C 3 ARG C 8 -1 N ILE C 3 O ILE C 123 SHEET 3 G 4 GLN C 11 GLY C 16 -1 O GLN C 11 N ARG C 8 SHEET 4 G 4 THR C 168 LEU C 172 -1 N THR C 168 O GLY C 16 SHEET 1 H 2 VAL C 20 LEU C 22 0 SHEET 2 H 2 THR C 25 LYS C 28 -1 O THR C 25 N LEU C 22 SHEET 1 I 5 VAL C 34 LEU C 37 0 SHEET 2 I 5 VAL C 42 GLY C 48 -1 O VAL C 42 N LEU C 37 SHEET 3 I 5 ALA C 93 ALA C 98 -1 O MET C 94 N ALA C 47 SHEET 4 I 5 SER C 103 ILE C 106 -1 N LEU C 104 O VAL C 97 SHEET 5 I 5 VAL C 112 VAL C 113 -1 N VAL C 113 O ILE C 105 LINK O GLY A 157 NA NA A 500 1555 1555 2.27 LINK O CYS A 160 NA NA A 500 1555 1555 2.28 LINK O THR A 163 NA NA A 500 1555 1555 2.27 LINK O HOH A 236 NA NA A 500 1555 1555 2.51 LINK O HOH A 237 NA NA A 500 1555 1555 2.41 LINK O HOH A 238 NA NA A 500 1555 1555 2.24 LINK O GLY B 157 NA NA B 500 1555 1555 2.28 LINK O CYS B 160 NA NA B 500 1555 1555 2.36 LINK O THR B 163 NA NA B 500 1555 1555 2.24 LINK NA NA B 500 O HOH B1234 1555 1555 2.51 LINK NA NA B 500 O HOH B1235 1555 1555 2.39 LINK NA NA B 500 O HOH B1236 1555 1555 2.57 LINK O GLY C 157 NA NA C 500 1555 1555 2.28 LINK O CYS C 160 NA NA C 500 1555 1555 2.36 LINK O THR C 163 NA NA C 500 1555 1555 2.22 LINK NA NA C 500 O HOH C2238 1555 1555 2.28 LINK NA NA C 500 O HOH C2239 1555 1555 2.42 LINK NA NA C 500 O HOH C2254 1555 1555 2.66 CISPEP 1 LEU A 172 PRO A 173 0 -0.35 CISPEP 2 LEU B 172 PRO B 173 0 -0.20 CISPEP 3 LEU C 172 PRO C 173 0 -0.29 SITE 1 AC1 6 GLY A 157 CYS A 160 THR A 163 HOH A 236 SITE 2 AC1 6 HOH A 237 HOH A 238 SITE 1 AC2 6 GLY B 157 CYS B 160 THR B 163 HOH B1234 SITE 2 AC2 6 HOH B1235 HOH B1236 SITE 1 AC3 6 GLY C 157 CYS C 160 THR C 163 HOH C2238 SITE 2 AC3 6 HOH C2239 HOH C2254 CRYST1 79.018 121.799 126.179 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012655 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007925 0.00000