PDB Short entry for 1G98 HEADER ISOMERASE 22-NOV-00 1G98 TITLE CRYSTAL STRUCTURE ANALYSIS OF RABBIT PHOSPHOGLUCOSE ISOMERASE TITLE 2 COMPLEXED WITH 5-PHOSPHOARABINONATE, A TRANSITION STATE ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLUCOSE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.9 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 OTHER_DETAILS: RABBIT SKELETAL MUSCLE TISSUE KEYWDS PHOSPHOGLUCOSE ISOMERASE, 5-PHOSPHOARABINONATE, TRANSITION STATE KEYWDS 2 ANALOGUE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.JEFFERY,R.HARDRE,L.SALMON REVDAT 4 09-AUG-23 1G98 1 REMARK REVDAT 3 16-NOV-11 1G98 1 VERSN HETATM REVDAT 2 24-FEB-09 1G98 1 VERSN REVDAT 1 01-JUN-01 1G98 0 JRNL AUTH C.J.JEFFERY,R.HARDRE,L.SALMON JRNL TITL CRYSTAL STRUCTURE OF RABBIT PHOSPHOGLUCOSE ISOMERASE JRNL TITL 2 COMPLEXED WITH 5-PHOSPHO-D-ARABINONATE IDENTIFIES THE ROLE JRNL TITL 3 OF GLU357 IN CATALYSIS. JRNL REF BIOCHEMISTRY V. 40 1560 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11327814 JRNL DOI 10.1021/BI0018483 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : CNS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 95997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9635 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 969 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8790 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 892 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.06 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.76 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.920 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1000012391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 93.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : 0.03500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.88 REMARK 200 R MERGE FOR SHELL (I) : 0.08200 REMARK 200 R SYM FOR SHELL (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 15.45 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1DQR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 15-20MG/ML PGI, 10MM REMARK 280 IMIDAZOLE (PH 7.5), 50MM KCL, 3MMNAN3, 5MM 5PAH RESERVOIR REMARK 280 SOLUTION: 10-15% PEG 8000, 250MM MAGNESIUM ACETATE, 100MM SODIUM REMARK 280 CACODYLATE (PH6.5). VAPOR DIFFUSION, HANGING DROP AT 298K, PH REMARK 280 7.0, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.91200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 135.91200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.41450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.27700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.41450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.27700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 135.91200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.41450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.27700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 135.91200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.41450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.27700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 992 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ILE A 556 REMARK 465 GLN A 557 REMARK 465 MET B 0 REMARK 465 ILE B 556 REMARK 465 GLN B 557 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 555 CG CD CE NZ REMARK 470 LYS B 555 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 LEU A 41 O HOH A 965 1.54 REMARK 500 CG LYS B 522 O HOH B 965 1.84 REMARK 500 O ARG B 552 O HOH B 1007 1.90 REMARK 500 N ALA A 2 O HOH A 806 1.95 REMARK 500 O PRO A 235 O HOH A 955 2.02 REMARK 500 NH2 ARG A 74 O VAL A 503 2.08 REMARK 500 OD2 ASP B 32 O HOH B 991 2.08 REMARK 500 OE2 GLU B 120 O HOH B 840 2.11 REMARK 500 NZ LYS A 422 O HOH A 836 2.11 REMARK 500 SG CYS B 132 O HOH B 812 2.12 REMARK 500 O HOH A 980 O HOH B 799 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 639 O HOH B 894 3555 1.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 MET A 459 CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 MET B 262 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 -3.51 80.03 REMARK 500 LYS A 56 36.17 -84.56 REMARK 500 ASP A 113 34.32 94.48 REMARK 500 ASP A 160 -61.94 -135.75 REMARK 500 SER A 175 -103.88 -91.67 REMARK 500 SER A 184 -48.05 -141.20 REMARK 500 SER A 209 113.43 -160.45 REMARK 500 LEU A 229 -8.32 -54.03 REMARK 500 LYS A 233 124.33 69.96 REMARK 500 ASP A 234 107.91 99.43 REMARK 500 PRO A 235 1.78 -66.02 REMARK 500 SER A 277 -156.00 -102.05 REMARK 500 ASP A 341 116.95 -161.29 REMARK 500 THR A 374 -139.77 -119.89 REMARK 500 ALA A 389 -106.00 -134.25 REMARK 500 LYS A 453 -89.08 -54.93 REMARK 500 SER A 454 162.17 133.99 REMARK 500 PRO A 455 -5.86 -55.35 REMARK 500 GLN A 511 67.79 -161.96 REMARK 500 HIS B 19 -14.52 -147.64 REMARK 500 ASN B 46 -1.53 77.67 REMARK 500 LYS B 56 38.86 -83.64 REMARK 500 ASP B 160 -57.35 -135.49 REMARK 500 SER B 184 -47.26 -140.06 REMARK 500 SER B 209 115.51 -160.65 REMARK 500 LYS B 233 -53.38 64.86 REMARK 500 SER B 277 -159.81 -100.13 REMARK 500 ASP B 341 118.27 -161.88 REMARK 500 THR B 374 -141.75 -119.29 REMARK 500 ALA B 389 -105.12 -133.74 REMARK 500 GLN B 511 65.87 -162.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 383 12.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PA5 A 558 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PA5 B 558 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DQR RELATED DB: PDB REMARK 900 RABBIT PHOSPHOGLUCOSE ISOMERASE COMPLEXED WITH 6-PHOSPHOGLUCONATE, REMARK 900 A COMPETITIVE INHIBITOR OF ISOMERASE CATALYTIC ACTIVITY DBREF 1G98 A 0 557 UNP Q9N1E2 G6PI_RABIT 1 558 DBREF 1G98 B 0 557 UNP Q9N1E2 G6PI_RABIT 1 558 SEQRES 1 A 558 MET ALA ALA LEU THR ARG ASN PRO GLN PHE GLN LYS LEU SEQRES 2 A 558 GLN GLN TRP HIS ARG GLU HIS GLY SER GLU LEU ASN LEU SEQRES 3 A 558 ARG HIS LEU PHE ASP THR ASP LYS GLU ARG PHE ASN HIS SEQRES 4 A 558 PHE SER LEU THR LEU ASN THR ASN HIS GLY HIS ILE LEU SEQRES 5 A 558 LEU ASP TYR SER LYS ASN LEU VAL THR GLU GLU VAL MET SEQRES 6 A 558 HIS MET LEU LEU ASP LEU ALA LYS SER ARG GLY VAL GLU SEQRES 7 A 558 ALA ALA ARG GLU SER MET PHE ASN GLY GLU LYS ILE ASN SEQRES 8 A 558 SER THR GLU ASP ARG ALA VAL LEU HIS VAL ALA LEU ARG SEQRES 9 A 558 ASN ARG SER ASN THR PRO ILE VAL VAL ASP GLY LYS ASP SEQRES 10 A 558 VAL MET PRO GLU VAL ASN LYS VAL LEU ASP LYS MET LYS SEQRES 11 A 558 ALA PHE CYS GLN ARG VAL ARG SER GLY ASP TRP LYS GLY SEQRES 12 A 558 TYR THR GLY LYS THR ILE THR ASP VAL ILE ASN ILE GLY SEQRES 13 A 558 ILE GLY GLY SER ASP LEU GLY PRO LEU MET VAL THR GLU SEQRES 14 A 558 ALA LEU LYS PRO TYR SER SER GLY GLY PRO ARG VAL TRP SEQRES 15 A 558 PHE VAL SER ASN ILE ASP GLY THR HIS ILE ALA LYS THR SEQRES 16 A 558 LEU ALA CYS LEU ASN PRO GLU SER SER LEU PHE ILE ILE SEQRES 17 A 558 ALA SER LYS THR PHE THR THR GLN GLU THR ILE THR ASN SEQRES 18 A 558 ALA LYS THR ALA LYS ASP TRP PHE LEU LEU SER ALA LYS SEQRES 19 A 558 ASP PRO SER THR VAL ALA LYS HIS PHE VAL ALA LEU SER SEQRES 20 A 558 THR ASN THR ALA LYS VAL LYS GLU PHE GLY ILE ASP PRO SEQRES 21 A 558 GLN ASN MET PHE GLU PHE TRP ASP TRP VAL GLY GLY ARG SEQRES 22 A 558 TYR SER LEU TRP SER ALA ILE GLY LEU SER ILE ALA LEU SEQRES 23 A 558 HIS VAL GLY PHE ASP ASN PHE GLU GLN LEU LEU SER GLY SEQRES 24 A 558 ALA HIS TRP MET ASP GLN HIS PHE ARG THR THR PRO LEU SEQRES 25 A 558 GLU LYS ASN ALA PRO VAL LEU LEU ALA MET LEU GLY ILE SEQRES 26 A 558 TRP TYR ILE ASN CYS PHE GLY CYS GLU THR GLN ALA VAL SEQRES 27 A 558 LEU PRO TYR ASP GLN TYR LEU HIS ARG PHE ALA ALA TYR SEQRES 28 A 558 PHE GLN GLN GLY ASP MET GLU SER ASN GLY LYS TYR ILE SEQRES 29 A 558 THR LYS SER GLY ALA ARG VAL ASP HIS GLN THR GLY PRO SEQRES 30 A 558 ILE VAL TRP GLY GLU PRO GLY THR ASN GLY GLN HIS ALA SEQRES 31 A 558 PHE TYR GLN LEU ILE HIS GLN GLY THR LYS MET ILE PRO SEQRES 32 A 558 CYS ASP PHE LEU ILE PRO VAL GLN THR GLN HIS PRO ILE SEQRES 33 A 558 ARG LYS GLY LEU HIS HIS LYS ILE LEU LEU ALA ASN PHE SEQRES 34 A 558 LEU ALA GLN THR GLU ALA LEU MET LYS GLY LYS SER THR SEQRES 35 A 558 GLU GLU ALA ARG LYS GLU LEU GLN ALA ALA GLY LYS SER SEQRES 36 A 558 PRO GLU ASP LEU MET LYS LEU LEU PRO HIS LYS VAL PHE SEQRES 37 A 558 GLU GLY ASN ARG PRO THR ASN SER ILE VAL PHE THR LYS SEQRES 38 A 558 LEU THR PRO PHE ILE LEU GLY ALA LEU ILE ALA MET TYR SEQRES 39 A 558 GLU HIS LYS ILE PHE VAL GLN GLY VAL VAL TRP ASP ILE SEQRES 40 A 558 ASN SER PHE ASP GLN TRP GLY VAL GLU LEU GLY LYS GLN SEQRES 41 A 558 LEU ALA LYS LYS ILE GLU PRO GLU LEU ASP GLY SER SER SEQRES 42 A 558 PRO VAL THR SER HIS ASP SER SER THR ASN GLY LEU ILE SEQRES 43 A 558 ASN PHE ILE LYS GLN GLN ARG GLU ALA LYS ILE GLN SEQRES 1 B 558 MET ALA ALA LEU THR ARG ASN PRO GLN PHE GLN LYS LEU SEQRES 2 B 558 GLN GLN TRP HIS ARG GLU HIS GLY SER GLU LEU ASN LEU SEQRES 3 B 558 ARG HIS LEU PHE ASP THR ASP LYS GLU ARG PHE ASN HIS SEQRES 4 B 558 PHE SER LEU THR LEU ASN THR ASN HIS GLY HIS ILE LEU SEQRES 5 B 558 LEU ASP TYR SER LYS ASN LEU VAL THR GLU GLU VAL MET SEQRES 6 B 558 HIS MET LEU LEU ASP LEU ALA LYS SER ARG GLY VAL GLU SEQRES 7 B 558 ALA ALA ARG GLU SER MET PHE ASN GLY GLU LYS ILE ASN SEQRES 8 B 558 SER THR GLU ASP ARG ALA VAL LEU HIS VAL ALA LEU ARG SEQRES 9 B 558 ASN ARG SER ASN THR PRO ILE VAL VAL ASP GLY LYS ASP SEQRES 10 B 558 VAL MET PRO GLU VAL ASN LYS VAL LEU ASP LYS MET LYS SEQRES 11 B 558 ALA PHE CYS GLN ARG VAL ARG SER GLY ASP TRP LYS GLY SEQRES 12 B 558 TYR THR GLY LYS THR ILE THR ASP VAL ILE ASN ILE GLY SEQRES 13 B 558 ILE GLY GLY SER ASP LEU GLY PRO LEU MET VAL THR GLU SEQRES 14 B 558 ALA LEU LYS PRO TYR SER SER GLY GLY PRO ARG VAL TRP SEQRES 15 B 558 PHE VAL SER ASN ILE ASP GLY THR HIS ILE ALA LYS THR SEQRES 16 B 558 LEU ALA CYS LEU ASN PRO GLU SER SER LEU PHE ILE ILE SEQRES 17 B 558 ALA SER LYS THR PHE THR THR GLN GLU THR ILE THR ASN SEQRES 18 B 558 ALA LYS THR ALA LYS ASP TRP PHE LEU LEU SER ALA LYS SEQRES 19 B 558 ASP PRO SER THR VAL ALA LYS HIS PHE VAL ALA LEU SER SEQRES 20 B 558 THR ASN THR ALA LYS VAL LYS GLU PHE GLY ILE ASP PRO SEQRES 21 B 558 GLN ASN MET PHE GLU PHE TRP ASP TRP VAL GLY GLY ARG SEQRES 22 B 558 TYR SER LEU TRP SER ALA ILE GLY LEU SER ILE ALA LEU SEQRES 23 B 558 HIS VAL GLY PHE ASP ASN PHE GLU GLN LEU LEU SER GLY SEQRES 24 B 558 ALA HIS TRP MET ASP GLN HIS PHE ARG THR THR PRO LEU SEQRES 25 B 558 GLU LYS ASN ALA PRO VAL LEU LEU ALA MET LEU GLY ILE SEQRES 26 B 558 TRP TYR ILE ASN CYS PHE GLY CYS GLU THR GLN ALA VAL SEQRES 27 B 558 LEU PRO TYR ASP GLN TYR LEU HIS ARG PHE ALA ALA TYR SEQRES 28 B 558 PHE GLN GLN GLY ASP MET GLU SER ASN GLY LYS TYR ILE SEQRES 29 B 558 THR LYS SER GLY ALA ARG VAL ASP HIS GLN THR GLY PRO SEQRES 30 B 558 ILE VAL TRP GLY GLU PRO GLY THR ASN GLY GLN HIS ALA SEQRES 31 B 558 PHE TYR GLN LEU ILE HIS GLN GLY THR LYS MET ILE PRO SEQRES 32 B 558 CYS ASP PHE LEU ILE PRO VAL GLN THR GLN HIS PRO ILE SEQRES 33 B 558 ARG LYS GLY LEU HIS HIS LYS ILE LEU LEU ALA ASN PHE SEQRES 34 B 558 LEU ALA GLN THR GLU ALA LEU MET LYS GLY LYS SER THR SEQRES 35 B 558 GLU GLU ALA ARG LYS GLU LEU GLN ALA ALA GLY LYS SER SEQRES 36 B 558 PRO GLU ASP LEU MET LYS LEU LEU PRO HIS LYS VAL PHE SEQRES 37 B 558 GLU GLY ASN ARG PRO THR ASN SER ILE VAL PHE THR LYS SEQRES 38 B 558 LEU THR PRO PHE ILE LEU GLY ALA LEU ILE ALA MET TYR SEQRES 39 B 558 GLU HIS LYS ILE PHE VAL GLN GLY VAL VAL TRP ASP ILE SEQRES 40 B 558 ASN SER PHE ASP GLN TRP GLY VAL GLU LEU GLY LYS GLN SEQRES 41 B 558 LEU ALA LYS LYS ILE GLU PRO GLU LEU ASP GLY SER SER SEQRES 42 B 558 PRO VAL THR SER HIS ASP SER SER THR ASN GLY LEU ILE SEQRES 43 B 558 ASN PHE ILE LYS GLN GLN ARG GLU ALA LYS ILE GLN HET PA5 A 558 15 HET PA5 B 558 15 HETNAM PA5 5-PHOSPHOARABINONIC ACID FORMUL 3 PA5 2(C5 H11 O9 P) FORMUL 5 HOH *892(H2 O) HELIX 1 1 ASN A 6 GLY A 20 1 15 HELIX 2 2 SER A 21 LEU A 23 5 3 HELIX 3 3 ASN A 24 THR A 31 1 8 HELIX 4 4 GLU A 34 PHE A 39 1 6 HELIX 5 5 THR A 60 ARG A 74 1 15 HELIX 6 6 GLY A 75 ASN A 85 1 11 HELIX 7 7 LEU A 98 ARG A 103 1 6 HELIX 8 8 VAL A 117 SER A 137 1 21 HELIX 9 9 ILE A 156 SER A 159 5 4 HELIX 10 10 ASP A 160 LEU A 170 1 11 HELIX 11 11 LYS A 171 SER A 174 5 4 HELIX 12 12 ASP A 187 ALA A 196 1 10 HELIX 13 13 CYS A 197 LEU A 198 5 2 HELIX 14 14 ASN A 199 GLU A 201 5 3 HELIX 15 15 THR A 214 ALA A 232 1 19 HELIX 16 16 THR A 237 LYS A 240 5 4 HELIX 17 17 ASN A 248 PHE A 255 1 8 HELIX 18 18 ASP A 258 GLN A 260 5 3 HELIX 19 19 GLY A 270 SER A 274 5 5 HELIX 20 20 SER A 277 ILE A 279 5 3 HELIX 21 21 GLY A 280 GLY A 288 1 9 HELIX 22 22 GLY A 288 THR A 309 1 22 HELIX 23 23 PRO A 310 LYS A 313 5 4 HELIX 24 24 ASN A 314 CYS A 329 1 16 HELIX 25 25 ASP A 341 HIS A 345 5 5 HELIX 26 26 ARG A 346 GLY A 360 1 15 HELIX 27 27 THR A 384 ALA A 389 5 6 HELIX 28 28 PHE A 390 GLY A 397 1 8 HELIX 29 29 PRO A 414 LYS A 417 5 4 HELIX 30 30 GLY A 418 GLY A 438 1 21 HELIX 31 31 SER A 440 ALA A 450 1 11 HELIX 32 32 GLU A 456 LEU A 462 1 7 HELIX 33 33 PRO A 463 VAL A 466 5 4 HELIX 34 34 THR A 482 ASP A 505 1 24 HELIX 35 35 GLN A 511 GLU A 525 1 15 HELIX 36 36 PRO A 526 ASP A 529 5 4 HELIX 37 37 ASP A 538 ARG A 552 1 15 HELIX 38 38 ALA B 1 ASN B 6 1 6 HELIX 39 39 ASN B 6 GLY B 20 1 15 HELIX 40 40 SER B 21 LEU B 23 5 3 HELIX 41 41 ASN B 24 ASP B 32 1 9 HELIX 42 42 GLU B 34 PHE B 39 1 6 HELIX 43 43 THR B 60 ARG B 74 1 15 HELIX 44 44 GLY B 75 ASN B 85 1 11 HELIX 45 45 LEU B 98 ARG B 103 1 6 HELIX 46 46 VAL B 117 SER B 137 1 21 HELIX 47 47 ILE B 156 SER B 159 5 4 HELIX 48 48 ASP B 160 LEU B 170 1 11 HELIX 49 49 LYS B 171 SER B 174 5 4 HELIX 50 50 ASP B 187 ALA B 196 1 10 HELIX 51 51 CYS B 197 LEU B 198 5 2 HELIX 52 52 ASN B 199 GLU B 201 5 3 HELIX 53 53 THR B 214 LYS B 233 1 20 HELIX 54 54 ASP B 234 LYS B 240 5 7 HELIX 55 55 ASN B 248 GLY B 256 1 9 HELIX 56 56 ASP B 258 GLN B 260 5 3 HELIX 57 57 GLY B 270 SER B 274 5 5 HELIX 58 58 SER B 277 ILE B 279 5 3 HELIX 59 59 GLY B 280 GLY B 288 1 9 HELIX 60 60 GLY B 288 THR B 309 1 22 HELIX 61 61 PRO B 310 LYS B 313 5 4 HELIX 62 62 ASN B 314 CYS B 329 1 16 HELIX 63 63 ASP B 341 HIS B 345 5 5 HELIX 64 64 ARG B 346 GLY B 360 1 15 HELIX 65 65 THR B 384 ALA B 389 5 6 HELIX 66 66 PHE B 390 GLY B 397 1 8 HELIX 67 67 PRO B 414 LYS B 417 5 4 HELIX 68 68 GLY B 418 GLY B 438 1 21 HELIX 69 69 SER B 440 ALA B 451 1 12 HELIX 70 70 SER B 454 LEU B 462 1 9 HELIX 71 71 PRO B 463 VAL B 466 5 4 HELIX 72 72 THR B 482 ASP B 505 1 24 HELIX 73 73 GLN B 511 ALA B 521 1 11 HELIX 74 74 LYS B 522 ASP B 529 5 8 HELIX 75 75 ASP B 538 ARG B 552 1 15 SHEET 1 A 6 SER A 40 ASN A 44 0 SHEET 2 A 6 HIS A 49 ASP A 53 -1 O ILE A 50 N LEU A 43 SHEET 3 A 6 THR A 473 LYS A 480 -1 O SER A 475 N ASP A 53 SHEET 4 A 6 CYS A 403 GLN A 410 1 O CYS A 403 N ASN A 474 SHEET 5 A 6 THR A 334 PRO A 339 1 O ALA A 336 N ASP A 404 SHEET 6 A 6 ILE A 377 TRP A 379 1 O ILE A 377 N GLN A 335 SHEET 1 B 5 ARG A 179 VAL A 183 0 SHEET 2 B 5 ASP A 150 ILE A 154 1 N VAL A 151 O ARG A 179 SHEET 3 B 5 SER A 203 ALA A 208 1 O LEU A 204 N ILE A 152 SHEET 4 B 5 PHE A 242 SER A 246 1 O VAL A 243 N ILE A 207 SHEET 5 B 5 MET A 262 GLU A 264 1 N PHE A 263 O ALA A 244 SHEET 1 C 6 SER B 40 ASN B 44 0 SHEET 2 C 6 HIS B 49 ASP B 53 -1 O ILE B 50 N LEU B 43 SHEET 3 C 6 THR B 473 LYS B 480 -1 O SER B 475 N ASP B 53 SHEET 4 C 6 CYS B 403 GLN B 410 1 O CYS B 403 N ASN B 474 SHEET 5 C 6 THR B 334 PRO B 339 1 O ALA B 336 N ASP B 404 SHEET 6 C 6 ILE B 377 TRP B 379 1 O ILE B 377 N GLN B 335 SHEET 1 D 2 VAL B 111 VAL B 112 0 SHEET 2 D 2 LYS B 115 ASP B 116 -1 N LYS B 115 O VAL B 112 SHEET 1 E 5 ARG B 179 VAL B 183 0 SHEET 2 E 5 ASP B 150 ILE B 154 1 N VAL B 151 O ARG B 179 SHEET 3 E 5 SER B 203 ALA B 208 1 O LEU B 204 N ILE B 152 SHEET 4 E 5 PHE B 242 SER B 246 1 O VAL B 243 N ILE B 207 SHEET 5 E 5 MET B 262 GLU B 264 1 N PHE B 263 O ALA B 244 CISPEP 1 GLY A 383 THR A 384 0 13.52 CISPEP 2 GLY B 383 THR B 384 0 23.98 SITE 1 AC1 18 ILE A 156 GLY A 157 GLY A 158 SER A 159 SITE 2 AC1 18 SER A 209 LYS A 210 THR A 211 THR A 214 SITE 3 AC1 18 GLN A 353 GLU A 357 LYS A 518 HOH A 926 SITE 4 AC1 18 HOH A 929 HOH A 930 HOH A 931 HOH A 932 SITE 5 AC1 18 HOH A 935 HIS B 388 SITE 1 AC2 18 HIS A 388 ILE B 156 GLY B 157 GLY B 158 SITE 2 AC2 18 SER B 159 SER B 209 LYS B 210 THR B 211 SITE 3 AC2 18 THR B 214 GLN B 353 GLU B 357 LYS B 518 SITE 4 AC2 18 HOH B 926 HOH B 966 HOH B 967 HOH B 969 SITE 5 AC2 18 HOH B 973 HOH B 974 CRYST1 82.829 116.554 271.824 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003679 0.00000