PDB Short entry for 1GD2 HEADER TRANSCRIPTION/DNA 25-AUG-00 1GD2 TITLE CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3'); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TRANSCRIPTION FACTOR PAP1; COMPND 7 CHAIN: E, F, G, H, I, J; COMPND 8 FRAGMENT: LEUCINE ZIPPER DOMAIN; COMPND 9 SYNONYM: AP-1-LIKE TRANSCRIPTION FACTOR; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 5 ORGANISM_COMMON: FISSION YEAST; SOURCE 6 ORGANISM_TAXID: 4896; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS BASIC LEUCINE ZIPPER, PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.FUJII,T.SHIMIZU,T.TODA,M.YANAGIDA,T.HAKOSHIMA REVDAT 4 27-DEC-23 1GD2 1 REMARK REVDAT 3 24-FEB-09 1GD2 1 VERSN REVDAT 2 01-APR-03 1GD2 1 JRNL REVDAT 1 02-OCT-00 1GD2 0 JRNL AUTH Y.FUJII,T.SHIMIZU,T.TODA,M.YANAGIDA,T.HAKOSHIMA JRNL TITL STRUCTURAL BASIS FOR THE DIVERSITY OF DNA RECOGNITION BY JRNL TITL 2 BZIP TRANSCRIPTION FACTORS. JRNL REF NAT.STRUCT.BIOL. V. 7 889 2000 JRNL REFN ISSN 1072-8368 JRNL PMID 11017199 JRNL DOI 10.1038/82822 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.FUJII,T.OHIRA,Y.KYOGOKU,T.TODA,M.YANAGIDA,T.HAKOSHIMA REMARK 1 TITL CRYSTALLOGRAPHIC CHARACTERIZATION OF PAP1-DNA COMPLEX REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 54 1014 1998 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444998003266 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.3 REMARK 3 NUMBER OF REFLECTIONS : 53446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5430 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2400 REMARK 3 NUCLEIC ACID ATOMS : 1056 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 831 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000005044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-C REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53501 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 45.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.4 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.24400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, KCL, MES, PH 5.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 120.45500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 69.54473 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 14.62333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 120.45500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 69.54473 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 14.62333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 120.45500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 69.54473 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.62333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 139.08945 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 29.24667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 139.08945 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.24667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 139.08945 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 29.24667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSMBLY IS A DIMER CONSTRUCTED FROM CHAIN E REMARK 300 AND F, CHAIN G AND H, AND CHAIN I AND J. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG E 71 REMARK 465 LYS E 72 REMARK 465 ASN E 73 REMARK 465 SER E 74 REMARK 465 LYS E 140 REMARK 465 ARG F 71 REMARK 465 LYS F 72 REMARK 465 ASN F 73 REMARK 465 SER F 74 REMARK 465 ASP F 75 REMARK 465 GLN F 76 REMARK 465 ARG G 71 REMARK 465 LYS G 72 REMARK 465 ASN G 73 REMARK 465 SER G 74 REMARK 465 ASP G 75 REMARK 465 LYS G 140 REMARK 465 ARG H 71 REMARK 465 LYS H 72 REMARK 465 ASN H 73 REMARK 465 SER H 74 REMARK 465 ASP H 75 REMARK 465 LYS H 140 REMARK 465 ARG I 71 REMARK 465 LYS I 72 REMARK 465 ASN I 73 REMARK 465 SER I 74 REMARK 465 ASP I 75 REMARK 465 GLN I 76 REMARK 465 GLU I 77 REMARK 465 PRO I 78 REMARK 465 SER I 79 REMARK 465 SER I 80 REMARK 465 LYS I 81 REMARK 465 ALA I 88 REMARK 465 ALA I 89 REMARK 465 GLN I 90 REMARK 465 ARG I 91 REMARK 465 ALA I 92 REMARK 465 PHE I 93 REMARK 465 ARG I 94 REMARK 465 LYS I 95 REMARK 465 ARG I 96 REMARK 465 LYS I 97 REMARK 465 GLU I 98 REMARK 465 ASP I 99 REMARK 465 HIS I 100 REMARK 465 LEU I 101 REMARK 465 LYS I 102 REMARK 465 ALA I 103 REMARK 465 LEU I 104 REMARK 465 GLN I 127 REMARK 465 LYS I 128 REMARK 465 ARG J 71 REMARK 465 LYS J 72 REMARK 465 ASN J 73 REMARK 465 SER J 74 REMARK 465 ASP J 75 REMARK 465 GLN J 76 REMARK 465 GLU J 77 REMARK 465 PRO J 78 REMARK 465 SER J 79 REMARK 465 SER J 80 REMARK 465 LYS J 81 REMARK 465 ARG J 82 REMARK 465 LYS J 83 REMARK 465 ALA J 84 REMARK 465 GLN J 85 REMARK 465 ASN J 86 REMARK 465 ARG J 87 REMARK 465 ALA J 88 REMARK 465 ALA J 89 REMARK 465 GLN J 90 REMARK 465 ARG J 91 REMARK 465 ALA J 92 REMARK 465 PHE J 93 REMARK 465 ARG J 94 REMARK 465 LYS J 95 REMARK 465 ARG J 96 REMARK 465 LYS J 97 REMARK 465 GLU J 98 REMARK 465 ASP J 99 REMARK 465 HIS J 100 REMARK 465 LEU J 101 REMARK 465 LYS J 102 REMARK 465 ALA J 103 REMARK 465 LEU J 104 REMARK 465 GLU J 105 REMARK 465 SER J 117 REMARK 465 THR J 118 REMARK 465 THR J 119 REMARK 465 LEU J 120 REMARK 465 GLU J 121 REMARK 465 ASN J 122 REMARK 465 ASP J 123 REMARK 465 GLN J 124 REMARK 465 LEU J 125 REMARK 465 ARG J 126 REMARK 465 GLN J 127 REMARK 465 LYS J 128 REMARK 465 VAL J 129 REMARK 465 ARG J 130 REMARK 465 GLN J 131 REMARK 465 LEU J 132 REMARK 465 GLU J 133 REMARK 465 GLU J 134 REMARK 465 GLU J 135 REMARK 465 LEU J 136 REMARK 465 ARG J 137 REMARK 465 ILE J 138 REMARK 465 LEU J 139 REMARK 465 LYS J 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP E 75 CG OD1 OD2 REMARK 470 ARG E 137 CG CD NE CZ NH1 NH2 REMARK 470 LEU E 139 CG CD1 CD2 REMARK 470 GLN F 127 CG CD OE1 NE2 REMARK 470 ARG F 130 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 140 CG CD CE NZ REMARK 470 GLN G 76 CG CD OE1 NE2 REMARK 470 GLN G 127 CG CD OE1 NE2 REMARK 470 LEU G 136 CG CD1 CD2 REMARK 470 GLN H 76 CG CD OE1 NE2 REMARK 470 GLN H 124 CG CD OE1 NE2 REMARK 470 ARG H 130 CG CD NE CZ NH1 NH2 REMARK 470 ARG H 137 CG CD NE CZ NH1 NH2 REMARK 470 ILE H 138 CG1 CG2 CD1 REMARK 470 ARG I 82 CG CD NE CZ NH1 NH2 REMARK 470 LYS I 83 CG CD CE NZ REMARK 470 GLN I 85 CG CD OE1 NE2 REMARK 470 ASN I 86 CG OD1 ND2 REMARK 470 ARG I 87 CG CD NE CZ NH1 NH2 REMARK 470 GLU I 105 CG CD OE1 OE2 REMARK 470 GLU I 113 CG CD OE1 OE2 REMARK 470 ASP I 123 CG OD1 OD2 REMARK 470 LEU I 125 CG CD1 CD2 REMARK 470 VAL I 129 CG1 CG2 REMARK 470 ARG I 130 CG CD NE CZ NH1 NH2 REMARK 470 GLN I 131 CG CD OE1 NE2 REMARK 470 LEU I 132 CG CD1 CD2 REMARK 470 GLU I 133 CG CD OE1 OE2 REMARK 470 GLU I 134 CG CD OE1 OE2 REMARK 470 GLU I 135 CG CD OE1 OE2 REMARK 470 LEU I 136 CG CD1 CD2 REMARK 470 ARG I 137 CG CD NE CZ NH1 NH2 REMARK 470 ILE I 138 CG1 CG2 CD1 REMARK 470 LEU I 139 CG CD1 CD2 REMARK 470 LYS I 140 CG CD CE NZ REMARK 470 THR J 106 OG1 CG2 REMARK 470 VAL J 108 CG1 CG2 REMARK 470 VAL J 109 CG1 CG2 REMARK 470 THR J 110 OG1 CG2 REMARK 470 LYS J 112 CG CD CE NZ REMARK 470 GLU J 113 CG CD OE1 OE2 REMARK 470 LEU J 114 CG CD1 CD2 REMARK 470 HIS J 115 CG ND1 CD2 CE1 NE2 REMARK 470 SER J 116 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS I 83 39.43 -144.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC A -1 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1GD2 E 71 140 UNP Q01663 AP1_SCHPO 71 140 DBREF 1GD2 F 71 140 UNP Q01663 AP1_SCHPO 71 140 DBREF 1GD2 G 71 140 UNP Q01663 AP1_SCHPO 71 140 DBREF 1GD2 H 71 140 UNP Q01663 AP1_SCHPO 71 140 DBREF 1GD2 I 71 140 UNP Q01663 AP1_SCHPO 71 140 DBREF 1GD2 J 71 140 UNP Q01663 AP1_SCHPO 71 140 DBREF 1GD2 A -7 6 PDB 1GD2 1GD2 -7 6 DBREF 1GD2 B -7 6 PDB 1GD2 1GD2 -7 6 DBREF 1GD2 C -7 6 PDB 1GD2 1GD2 -7 6 DBREF 1GD2 D -7 6 PDB 1GD2 1GD2 -7 6 SEQRES 1 A 13 DA DG DG DT DT DA DC DG DT DA DA DC DC SEQRES 1 B 13 DA DG DG DT DT DA DC DG DT DA DA DC DC SEQRES 1 C 13 DA DG DG DT DT DA DC DG DT DA DA DC DC SEQRES 1 D 13 DA DG DG DT DT DA DC DG DT DA DA DC DC SEQRES 1 E 70 ARG LYS ASN SER ASP GLN GLU PRO SER SER LYS ARG LYS SEQRES 2 E 70 ALA GLN ASN ARG ALA ALA GLN ARG ALA PHE ARG LYS ARG SEQRES 3 E 70 LYS GLU ASP HIS LEU LYS ALA LEU GLU THR GLN VAL VAL SEQRES 4 E 70 THR LEU LYS GLU LEU HIS SER SER THR THR LEU GLU ASN SEQRES 5 E 70 ASP GLN LEU ARG GLN LYS VAL ARG GLN LEU GLU GLU GLU SEQRES 6 E 70 LEU ARG ILE LEU LYS SEQRES 1 F 70 ARG LYS ASN SER ASP GLN GLU PRO SER SER LYS ARG LYS SEQRES 2 F 70 ALA GLN ASN ARG ALA ALA GLN ARG ALA PHE ARG LYS ARG SEQRES 3 F 70 LYS GLU ASP HIS LEU LYS ALA LEU GLU THR GLN VAL VAL SEQRES 4 F 70 THR LEU LYS GLU LEU HIS SER SER THR THR LEU GLU ASN SEQRES 5 F 70 ASP GLN LEU ARG GLN LYS VAL ARG GLN LEU GLU GLU GLU SEQRES 6 F 70 LEU ARG ILE LEU LYS SEQRES 1 G 70 ARG LYS ASN SER ASP GLN GLU PRO SER SER LYS ARG LYS SEQRES 2 G 70 ALA GLN ASN ARG ALA ALA GLN ARG ALA PHE ARG LYS ARG SEQRES 3 G 70 LYS GLU ASP HIS LEU LYS ALA LEU GLU THR GLN VAL VAL SEQRES 4 G 70 THR LEU LYS GLU LEU HIS SER SER THR THR LEU GLU ASN SEQRES 5 G 70 ASP GLN LEU ARG GLN LYS VAL ARG GLN LEU GLU GLU GLU SEQRES 6 G 70 LEU ARG ILE LEU LYS SEQRES 1 H 70 ARG LYS ASN SER ASP GLN GLU PRO SER SER LYS ARG LYS SEQRES 2 H 70 ALA GLN ASN ARG ALA ALA GLN ARG ALA PHE ARG LYS ARG SEQRES 3 H 70 LYS GLU ASP HIS LEU LYS ALA LEU GLU THR GLN VAL VAL SEQRES 4 H 70 THR LEU LYS GLU LEU HIS SER SER THR THR LEU GLU ASN SEQRES 5 H 70 ASP GLN LEU ARG GLN LYS VAL ARG GLN LEU GLU GLU GLU SEQRES 6 H 70 LEU ARG ILE LEU LYS SEQRES 1 I 70 ARG LYS ASN SER ASP GLN GLU PRO SER SER LYS ARG LYS SEQRES 2 I 70 ALA GLN ASN ARG ALA ALA GLN ARG ALA PHE ARG LYS ARG SEQRES 3 I 70 LYS GLU ASP HIS LEU LYS ALA LEU GLU THR GLN VAL VAL SEQRES 4 I 70 THR LEU LYS GLU LEU HIS SER SER THR THR LEU GLU ASN SEQRES 5 I 70 ASP GLN LEU ARG GLN LYS VAL ARG GLN LEU GLU GLU GLU SEQRES 6 I 70 LEU ARG ILE LEU LYS SEQRES 1 J 70 ARG LYS ASN SER ASP GLN GLU PRO SER SER LYS ARG LYS SEQRES 2 J 70 ALA GLN ASN ARG ALA ALA GLN ARG ALA PHE ARG LYS ARG SEQRES 3 J 70 LYS GLU ASP HIS LEU LYS ALA LEU GLU THR GLN VAL VAL SEQRES 4 J 70 THR LEU LYS GLU LEU HIS SER SER THR THR LEU GLU ASN SEQRES 5 J 70 ASP GLN LEU ARG GLN LYS VAL ARG GLN LEU GLU GLU GLU SEQRES 6 J 70 LEU ARG ILE LEU LYS FORMUL 11 HOH *831(H2 O) HELIX 1 1 SER E 79 ARG E 126 1 48 HELIX 2 2 GLN E 127 LEU E 139 1 13 HELIX 3 3 SER F 79 LYS F 140 1 62 HELIX 4 4 SER G 79 ILE G 138 1 60 HELIX 5 5 SER H 79 LEU H 136 1 58 HELIX 6 6 THR I 106 ARG I 126 1 21 HELIX 7 7 VAL I 129 LYS I 140 1 12 HELIX 8 8 VAL J 108 GLU J 113 1 6 CRYST1 240.910 240.910 43.870 90.00 90.00 120.00 H 3 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004151 0.002397 0.000000 0.00000 SCALE2 0.000000 0.004793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022795 0.00000