PDB Short entry for 1GIC HEADER LECTIN 08-AUG-96 1GIC TITLE CONCANAVALIN A COMPLEXED WITH METHYL ALPHA-D-GLUCOPYRANOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONCANAVALIN A; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA ENSIFORMIS; SOURCE 3 ORGANISM_COMMON: JACK BEAN; SOURCE 4 ORGANISM_TAXID: 3823 KEYWDS COMPLEX, LECTIN, SACCHARIDE EXPDTA X-RAY DIFFRACTION AUTHOR G.M.BRADBROOK,T.GLEICHMANN,S.J.HARROP,J.R.HELLIWELL,J.HABASH, AUTHOR 2 A.J.KALB(GILBOA),L.TONG,T.C.M.WAN,J.YARIV REVDAT 5 09-AUG-23 1GIC 1 HETSYN REVDAT 4 29-JUL-20 1GIC 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 13-JUL-11 1GIC 1 VERSN REVDAT 2 24-FEB-09 1GIC 1 VERSN REVDAT 1 20-AUG-97 1GIC 0 JRNL AUTH S.J.HARROP,J.R.HELLIWELL,T.C.WAN,A.J.KALB,L.TONG,J.YARIV JRNL TITL STRUCTURE SOLUTION OF A CUBIC CRYSTAL OF CONCANAVALIN A JRNL TITL 2 COMPLEXED WITH METHYL ALPHA-D-GLUCOPYRANOSIDE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 52 143 1996 JRNL REFN ISSN 0907-4449 JRNL PMID 15299735 JRNL DOI 10.1107/S0907444995008742 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.J.HARROP,J.R.HELLIWELL,T.C.M.WAN,A.J.KALB(GILBOA),L.TONG, REMARK 1 AUTH 2 J.YARIV REMARK 1 TITL STRUCTURE SOLUTION OF A CUBIC CRYSTAL OF CONCANAVALIN A REMARK 1 TITL 2 COMPLEXED WITH METHYL-ALPHA-D-GLUCOPYRANOSIDE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 52 143 1995 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 64.0 REMARK 3 NUMBER OF REFLECTIONS : 34648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3618 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 3.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 2.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GIC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 1988 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR AND MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN (TO 5.2A), MOSFLM (TO REMARK 200 3A/2A) REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34648 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 64.0 REMARK 200 DATA REDUNDANCY : 30.00 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR + MR REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1CON REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DIALYSIS; 5MM PROTEIN CONCENTRATION REMARK 280 WITH, PH 6.8, DIALYSIS REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 83.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 83.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 83.90000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 83.90000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 83.90000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 83.90000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 83.90000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 83.90000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 83.90000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 83.90000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 83.90000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 83.90000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 83.90000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 83.90000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 83.90000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 83.90000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 83.90000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 83.90000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 83.90000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 83.90000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 83.90000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 83.90000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 83.90000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 83.90000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 167.80000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 180 NE2 HIS A 180 CD2 -0.067 REMARK 500 HIS A 205 NE2 HIS A 205 CD2 -0.075 REMARK 500 HIS B 180 NE2 HIS B 180 CD2 -0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 12 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 VAL A 32 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 TRP A 40 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP A 40 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR A 77 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TRP A 88 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 88 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 VAL A 89 N - CA - CB ANGL. DEV. = -19.4 DEGREES REMARK 500 TRP A 109 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP A 182 CA - CB - CG ANGL. DEV. = 11.4 DEGREES REMARK 500 TRP A 182 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP A 182 CG - CD1 - NE1 ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 182 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 228 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR B 22 CB - CG - CD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 VAL B 32 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 TRP B 40 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP B 40 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP B 88 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP B 88 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 VAL B 89 N - CA - CB ANGL. DEV. = -18.4 DEGREES REMARK 500 ARG B 90 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 90 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP B 109 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 LEU B 174 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 TRP B 182 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP B 182 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 228 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 228 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU B 232 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 79.37 -114.35 REMARK 500 SER A 21 30.81 -84.23 REMARK 500 LYS A 30 18.57 59.70 REMARK 500 ASN A 69 68.26 35.95 REMARK 500 SER A 161 -35.25 -33.44 REMARK 500 SER A 204 37.45 -82.47 REMARK 500 LEU A 230 18.88 50.84 REMARK 500 ASN B 14 75.45 -102.30 REMARK 500 SER B 21 28.68 -74.57 REMARK 500 HIS B 121 39.25 72.25 REMARK 500 THR B 150 -74.03 -44.22 REMARK 500 LEU B 230 22.68 47.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 100 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 239 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 88.4 REMARK 620 3 ASP A 19 OD1 169.9 96.4 REMARK 620 4 HIS A 24 NE2 93.3 84.4 96.0 REMARK 620 5 HOH A 301 O 84.4 90.0 86.7 174.0 REMARK 620 6 HOH A 302 O 89.8 177.8 85.7 94.5 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 240 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 50.9 REMARK 620 3 TYR A 12 O 78.3 115.1 REMARK 620 4 ASN A 14 OD1 147.0 161.6 75.2 REMARK 620 5 ASP A 19 OD2 111.6 78.5 88.2 86.9 REMARK 620 6 HOH A 299 O 70.7 106.3 87.5 88.8 174.6 REMARK 620 7 HOH A 300 O 110.5 74.4 170.3 95.2 92.2 91.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 239 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 8 OE2 REMARK 620 2 ASP B 10 OD2 100.1 REMARK 620 3 ASP B 19 OD1 164.0 92.8 REMARK 620 4 HIS B 24 NE2 93.3 91.6 95.7 REMARK 620 5 HOH B 316 O 83.8 91.6 86.5 176.0 REMARK 620 6 HOH B 317 O 82.2 176.8 84.5 90.4 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 240 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 10 OD2 53.7 REMARK 620 3 TYR B 12 O 72.4 111.5 REMARK 620 4 ASN B 14 OD1 145.7 159.7 79.4 REMARK 620 5 ASP B 19 OD2 106.2 76.5 82.2 88.5 REMARK 620 6 HOH B 314 O 79.1 112.8 92.2 82.9 170.5 REMARK 620 7 HOH B 315 O 119.3 76.7 168.0 90.3 91.5 92.6 REMARK 620 N 1 2 3 4 5 6 DBREF 1GIC A 119 237 UNP P02866 CONA_CANEN 30 148 DBREF 1GIC B 119 237 UNP P02866 CONA_CANEN 30 148 SEQADV 1GIC ASP A 151 UNP P02866 GLU 62 CONFLICT SEQADV 1GIC GLU A 155 UNP P02866 ARG 66 CONFLICT SEQADV 1GIC ASP B 151 UNP P02866 GLU 62 CONFLICT SEQADV 1GIC GLU B 155 UNP P02866 ARG 66 CONFLICT SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 A 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 A 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 A 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 A 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN SEQRES 1 B 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 B 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 B 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 B 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 B 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 B 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 B 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 B 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 B 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 B 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 B 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 B 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 B 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 B 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 B 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 B 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 B 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 B 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 B 237 ASP ALA ASN HET GYP A 238 13 HET MN A 239 1 HET CA A 240 1 HET GYP B 238 13 HET MN B 239 1 HET CA B 240 1 HETNAM GYP METHYL ALPHA-D-GLUCOPYRANOSIDE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETSYN GYP METHYL-ALPHA-D-GLUCOPYRANOSIDE; ALPHA-METHYL-D- HETSYN 2 GYP GLUCOPYRANOSIDE; METHYL ALPHA-D-GLUCOSIDE; METHYL D- HETSYN 3 GYP GLUCOSIDE; METHYL GLUCOSIDE FORMUL 3 GYP 2(C7 H14 O6) FORMUL 4 MN 2(MN 2+) FORMUL 5 CA 2(CA 2+) FORMUL 9 HOH *360(H2 O) HELIX 1 1 THR A 15 ILE A 17 5 3 HELIX 2 2 LEU A 81 ASN A 83 5 3 HELIX 3 3 THR A 150 GLY A 152 5 3 HELIX 4 4 GLY A 227 LEU A 229 5 3 HELIX 5 5 THR B 15 ILE B 17 5 3 HELIX 6 6 LEU B 81 ASN B 83 5 3 HELIX 7 7 GLY B 227 LEU B 229 5 3 SHEET 1 A 7 LYS A 36 LYS A 39 0 SHEET 2 A 7 HIS A 24 ILE A 29 -1 N ILE A 27 O LYS A 36 SHEET 3 A 7 ILE A 4 ASP A 10 -1 N ASP A 10 O HIS A 24 SHEET 4 A 7 GLY A 209 ASN A 216 -1 N ILE A 214 O VAL A 5 SHEET 5 A 7 VAL A 89 SER A 96 -1 N SER A 96 O GLY A 209 SHEET 6 A 7 VAL A 170 PHE A 175 -1 N ALA A 173 O LEU A 93 SHEET 7 A 7 LEU A 140 GLY A 144 -1 N GLN A 143 O ARG A 172 SHEET 1 B12 ALA A 73 ASP A 78 0 SHEET 2 B12 ARG A 60 TYR A 67 -1 N VAL A 65 O ALA A 73 SHEET 3 B12 VAL A 47 ASN A 55 -1 N ILE A 53 O SER A 62 SHEET 4 B12 VAL A 188 LYS A 200 -1 N PHE A 197 O GLY A 48 SHEET 5 B12 THR A 103 LYS A 116 -1 N LYS A 116 O VAL A 188 SHEET 6 B12 THR A 123 PHE A 130 -1 N PHE A 130 O TRP A 109 SHEET 7 B12 THR B 123 PHE B 130 -1 N MET B 129 O ALA A 125 SHEET 8 B12 THR B 105 LYS B 116 -1 N LEU B 115 O ASN B 124 SHEET 9 B12 VAL B 188 LEU B 198 -1 N LEU B 198 O THR B 105 SHEET 10 B12 VAL B 47 ASN B 55 -1 N TYR B 54 O PHE B 191 SHEET 11 B12 ARG B 60 TYR B 67 -1 N SER B 66 O THR B 49 SHEET 12 B12 ALA B 73 ASP B 78 -1 N TYR B 77 O LEU B 61 SHEET 1 C 7 LYS B 36 LYS B 39 0 SHEET 2 C 7 HIS B 24 ILE B 29 -1 N ILE B 27 O LYS B 36 SHEET 3 C 7 ILE B 4 ASP B 10 -1 N ASP B 10 O HIS B 24 SHEET 4 C 7 GLY B 209 SER B 215 -1 N ILE B 214 O VAL B 5 SHEET 5 C 7 ARG B 90 SER B 96 -1 N SER B 96 O GLY B 209 SHEET 6 C 7 VAL B 170 PHE B 175 -1 N ALA B 173 O LEU B 93 SHEET 7 C 7 LEU B 140 GLY B 144 -1 N GLN B 143 O ARG B 172 LINK OE2 GLU A 8 MN MN A 239 1555 1555 2.31 LINK OD2 ASP A 10 MN MN A 239 1555 1555 2.10 LINK OD1 ASP A 10 CA CA A 240 1555 1555 2.35 LINK OD2 ASP A 10 CA CA A 240 1555 1555 2.62 LINK O TYR A 12 CA CA A 240 1555 1555 2.29 LINK OD1 ASN A 14 CA CA A 240 1555 1555 2.53 LINK OD1 ASP A 19 MN MN A 239 1555 1555 2.27 LINK OD2 ASP A 19 CA CA A 240 1555 1555 2.34 LINK NE2 HIS A 24 MN MN A 239 1555 1555 2.28 LINK MN MN A 239 O HOH A 301 1555 1555 2.09 LINK MN MN A 239 O HOH A 302 1555 1555 2.04 LINK CA CA A 240 O HOH A 299 1555 1555 2.47 LINK CA CA A 240 O HOH A 300 1555 1555 2.22 LINK OE2 GLU B 8 MN MN B 239 1555 1555 2.22 LINK OD2 ASP B 10 MN MN B 239 1555 1555 2.14 LINK OD1 ASP B 10 CA CA B 240 1555 1555 2.28 LINK OD2 ASP B 10 CA CA B 240 1555 1555 2.48 LINK O TYR B 12 CA CA B 240 1555 1555 2.34 LINK OD1 ASN B 14 CA CA B 240 1555 1555 2.48 LINK OD1 ASP B 19 MN MN B 239 1555 1555 2.26 LINK OD2 ASP B 19 CA CA B 240 1555 1555 2.37 LINK NE2 HIS B 24 MN MN B 239 1555 1555 2.31 LINK MN MN B 239 O HOH B 316 1555 1555 2.22 LINK MN MN B 239 O HOH B 317 1555 1555 2.10 LINK CA CA B 240 O HOH B 314 1555 1555 2.12 LINK CA CA B 240 O HOH B 315 1555 1555 2.41 CISPEP 1 ALA A 1 ASP A 2 0 -0.04 CISPEP 2 ALA A 207 ASP A 208 0 0.50 CISPEP 3 ALA B 207 ASP B 208 0 0.21 CRYST1 167.800 167.800 167.800 90.00 90.00 90.00 I 21 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005959 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005959 0.00000