PDB Short entry for 1GJV HEADER TRANSFERASE 03-AUG-01 1GJV TITLE BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE KINASE (BCK) COMPLXED WITH TITLE 2 ATP-GAMMA-S COMPND MOL_ID: 1; COMPND 2 MOLECULE: [3-METHYL-2-OXOBUTANOATE DEHYDROGENASE [LIPOAMIDE]] KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE KINASE; COMPND 5 EC: 2.7.1.115; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: C-TERMINAL HIS6-TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: CG-712; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PTRCHISB; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRCKINASEHIS6/PGROESL KEYWDS MITOCHONDRIAL PROTEIN KINASE, POTASSIUM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MACHIUS,J.L.CHUANG,M.R.WYNN,D.R.TOMCHICK,D.T.CHUANG REVDAT 6 01-MAY-24 1GJV 1 REMARK LINK REVDAT 5 15-MAY-19 1GJV 1 REMARK REVDAT 4 06-MAR-19 1GJV 1 REMARK REVDAT 3 30-JAN-13 1GJV 1 AUTHOR JRNL REMARK VERSN REVDAT 3 2 1 HET HETNAM HETSYN FORMUL REVDAT 3 3 1 LINK SITE ATOM TER REVDAT 3 4 1 HETATM REVDAT 2 24-FEB-09 1GJV 1 VERSN REVDAT 1 11-OCT-01 1GJV 0 JRNL AUTH M.MACHIUS,J.L.CHUANG,M.R.WYNN,D.R.TOMCHICK,D.T.CHUANG JRNL TITL STRUCTURE OF RAT BCKD KINASE: NUCLEOTIDE-INDUCED DOMAIN JRNL TITL 2 COMMUNICATION IN A MITOCHONDRIAL PROTEIN KINASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 11218 2001 JRNL REFN ISSN 0027-8424 JRNL PMID 11562470 JRNL DOI 10.1073/PNAS.201220098 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 298048.800 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 16665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1430 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2240 REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 207 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2526 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.71000 REMARK 3 B22 (A**2) : 2.71000 REMARK 3 B33 (A**2) : -5.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.110 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.430 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.480 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.130 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.340 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 51.49 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : MY_ATP-CAB.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : &_1_TOPOLOGY_INFILE_1 REMARK 3 TOPOLOGY FILE 2 : &_1_TOPOLOGY_INFILE_2 REMARK 3 TOPOLOGY FILE 3 : &_1_TOPOLOGY_INFILE_3 REMARK 3 TOPOLOGY FILE 4 : &_1_TOPOLOGY_INFILE_4 REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REGIONS: 1-37, 307-335, 379-388 WERE REMARK 3 NOT SEEN IN THE REFINEMENT REMARK 4 REMARK 4 1GJV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1290008414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRROR SYSTEM REMARK 200 OPTICS : OSMIC MIRROR SYSTEM REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 36.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.53300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.0 REMARK 200 STARTING MODEL: BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE KINASE REMARK 200 (BCK) SELENOMETHIONINE VARIANT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION 20C EQUAL AMOUNTS OF REMARK 280 BCK (20 MG/ML IN 50 MM HEPES PH 7.5, 1 M SODIUM CHLORIDE,250 MM REMARK 280 POTASSIUM CHLORIDE, 300 MM ARGININE, 20 MM BETA-MERCAPTOETHANOL REMARK 280 2 MM BENZAMIDINE, 2 MM MG-ATPGAMMAS, 2 MM MAGNESIUM CHLORIDE, REMARK 280 0.5 MM PMSF, 10% (W/V) GLYCEROL) AND RESERVOIR (8%(W/V) PEG-6000, REMARK 280 5% (V/V) ETHYLENE GLYCOL, 1 M NACL, 20 MM BETA-MERCAPTOETHANOL), REMARK 280 PH 7.50, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.86100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.86100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.15700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.86100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.86100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.15700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.86100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.86100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.15700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.86100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.86100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.15700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 THR A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 VAL A 10 REMARK 465 GLU A 11 REMARK 465 LEU A 12 REMARK 465 ALA A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 LYS A 18 REMARK 465 THR A 19 REMARK 465 VAL A 20 REMARK 465 THR A 21 REMARK 465 SER A 22 REMARK 465 PHE A 23 REMARK 465 TYR A 24 REMARK 465 ASN A 25 REMARK 465 GLN A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 ILE A 29 REMARK 465 ASP A 30 REMARK 465 VAL A 31 REMARK 465 VAL A 32 REMARK 465 ALA A 33 REMARK 465 GLU A 34 REMARK 465 LYS A 35 REMARK 465 PRO A 36 REMARK 465 SER A 37 REMARK 465 GLU A 307 REMARK 465 ALA A 308 REMARK 465 SER A 309 REMARK 465 THR A 310 REMARK 465 GLN A 311 REMARK 465 ASP A 312 REMARK 465 PRO A 313 REMARK 465 ARG A 314 REMARK 465 ILE A 315 REMARK 465 SER A 316 REMARK 465 PRO A 317 REMARK 465 LEU A 318 REMARK 465 PHE A 319 REMARK 465 GLY A 320 REMARK 465 HIS A 321 REMARK 465 LEU A 322 REMARK 465 ASP A 323 REMARK 465 MET A 324 REMARK 465 HIS A 325 REMARK 465 SER A 326 REMARK 465 GLY A 327 REMARK 465 GLY A 328 REMARK 465 GLN A 329 REMARK 465 SER A 330 REMARK 465 GLY A 331 REMARK 465 PRO A 332 REMARK 465 MET A 333 REMARK 465 HIS A 334 REMARK 465 PHE A 380 REMARK 465 ARG A 381 REMARK 465 ILE A 382 REMARK 465 HIS A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 379 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 90 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 41 96.53 144.59 REMARK 500 PRO A 42 -74.23 -95.64 REMARK 500 SER A 51 -121.64 -14.33 REMARK 500 GLN A 52 -118.41 65.88 REMARK 500 GLU A 67 -64.02 -144.40 REMARK 500 LYS A 148 32.07 -83.32 REMARK 500 HIS A 149 -39.81 -130.27 REMARK 500 LEU A 180 -3.84 -57.21 REMARK 500 HIS A 227 61.44 -69.70 REMARK 500 THR A 261 43.27 -140.83 REMARK 500 HIS A 302 -15.33 82.83 REMARK 500 THR A 304 143.99 -172.93 REMARK 500 LEU A 359 77.07 -115.96 REMARK 500 ILE A 362 -56.24 -126.82 REMARK 500 ILE A 373 -70.56 -20.37 REMARK 500 ASP A 374 10.54 179.85 REMARK 500 GLU A 378 -35.49 -151.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1379 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 249 OD1 REMARK 620 2 AGS A1383 O2B 86.5 REMARK 620 3 AGS A1383 O1A 77.7 83.6 REMARK 620 4 AGS A1383 O2G 165.2 84.6 89.6 REMARK 620 5 HOH A2039 O 94.4 178.7 95.6 94.3 REMARK 620 6 HOH A2069 O 82.8 78.9 154.5 107.0 102.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1380 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 298 O REMARK 620 2 ASP A 300 O 99.5 REMARK 620 3 PHE A 303 N 135.8 56.1 REMARK 620 4 PHE A 303 O 133.8 104.6 48.5 REMARK 620 5 GLY A 337 O 145.6 76.8 70.3 79.0 REMARK 620 6 AGS A1383 O2A 84.9 142.0 137.9 98.7 78.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1382 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS A 1383 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CRYSTALLIZED VERSION CONTAINS A C-TERMINAL HIS6-TAG DBREF 1GJV A 1 382 UNP Q00972 BCKD_RAT 31 412 DBREF 1GJV A 383 388 PDB 1GJV 1GJV 383 388 SEQRES 1 A 388 SER THR SER ALA THR ASP THR HIS HIS VAL GLU LEU ALA SEQRES 2 A 388 ARG GLU ARG SER LYS THR VAL THR SER PHE TYR ASN GLN SEQRES 3 A 388 SER ALA ILE ASP VAL VAL ALA GLU LYS PRO SER VAL ARG SEQRES 4 A 388 LEU THR PRO THR MET MET LEU TYR SER GLY ARG SER GLN SEQRES 5 A 388 ASP GLY SER HIS LEU LEU LYS SER GLY ARG TYR LEU GLN SEQRES 6 A 388 GLN GLU LEU PRO VAL ARG ILE ALA HIS ARG ILE LYS GLY SEQRES 7 A 388 PHE ARG SER LEU PRO PHE ILE ILE GLY CYS ASN PRO THR SEQRES 8 A 388 ILE LEU HIS VAL HIS GLU LEU TYR ILE ARG ALA PHE GLN SEQRES 9 A 388 LYS LEU THR ASP PHE PRO PRO ILE LYS ASP GLN ALA ASP SEQRES 10 A 388 GLU ALA GLN TYR CYS GLN LEU VAL ARG GLN LEU LEU ASP SEQRES 11 A 388 ASP HIS LYS ASP VAL VAL THR LEU LEU ALA GLU GLY LEU SEQRES 12 A 388 ARG GLU SER ARG LYS HIS ILE GLU ASP GLU LYS LEU VAL SEQRES 13 A 388 ARG TYR PHE LEU ASP LYS THR LEU THR SER ARG LEU GLY SEQRES 14 A 388 ILE ARG MET LEU ALA THR HIS HIS LEU ALA LEU HIS GLU SEQRES 15 A 388 ASP LYS PRO ASP PHE VAL GLY ILE ILE CYS THR ARG LEU SEQRES 16 A 388 SER PRO LYS LYS ILE ILE GLU LYS TRP VAL ASP PHE ALA SEQRES 17 A 388 ARG ARG LEU CYS GLU HIS LYS TYR GLY ASN ALA PRO ARG SEQRES 18 A 388 VAL ARG ILE ASN GLY HIS VAL ALA ALA ARG PHE PRO PHE SEQRES 19 A 388 ILE PRO MET PRO LEU ASP TYR ILE LEU PRO GLU LEU LEU SEQRES 20 A 388 LYS ASN ALA MET ARG ALA THR MET GLU SER HIS LEU ASP SEQRES 21 A 388 THR PRO TYR ASN VAL PRO ASP VAL VAL ILE THR ILE ALA SEQRES 22 A 388 ASN ASN ASP VAL ASP LEU ILE ILE ARG ILE SER ASP ARG SEQRES 23 A 388 GLY GLY GLY ILE ALA HIS LYS ASP LEU ASP ARG VAL MET SEQRES 24 A 388 ASP TYR HIS PHE THR THR ALA GLU ALA SER THR GLN ASP SEQRES 25 A 388 PRO ARG ILE SER PRO LEU PHE GLY HIS LEU ASP MET HIS SEQRES 26 A 388 SER GLY GLY GLN SER GLY PRO MET HIS GLY PHE GLY PHE SEQRES 27 A 388 GLY LEU PRO THR SER ARG ALA TYR ALA GLU TYR LEU GLY SEQRES 28 A 388 GLY SER LEU GLN LEU GLN SER LEU GLN GLY ILE GLY THR SEQRES 29 A 388 ASP VAL TYR LEU ARG LEU ARG HIS ILE ASP GLY ARG GLU SEQRES 30 A 388 GLU SER PHE ARG ILE HIS HIS HIS HIS HIS HIS HET CL A 502 1 HET CL A 504 1 HET CL A 505 1 HET MG A1379 1 HET K A1380 1 HET CL A1381 1 HET CL A1382 1 HET AGS A1383 31 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 2 CL 5(CL 1-) FORMUL 5 MG MG 2+ FORMUL 6 K K 1+ FORMUL 9 AGS C10 H16 N5 O12 P3 S FORMUL 10 HOH *70(H2 O) HELIX 1 1 GLY A 54 GLN A 66 1 13 HELIX 2 2 GLU A 67 LEU A 82 1 16 HELIX 3 3 PRO A 83 CYS A 88 1 6 HELIX 4 4 ASN A 89 ASP A 108 1 20 HELIX 5 5 ASP A 114 HIS A 132 1 19 HELIX 6 6 ASP A 134 ARG A 147 1 14 HELIX 7 7 ASP A 152 LEU A 180 1 29 HELIX 8 8 SER A 196 GLY A 217 1 22 HELIX 9 9 ILE A 235 SER A 257 1 23 HELIX 10 10 ALA A 291 LEU A 295 5 5 HELIX 11 11 PHE A 338 GLY A 351 1 14 SHEET 1 AA 3 PHE A 187 VAL A 188 0 SHEET 2 AA 3 ILE A 191 LEU A 195 -1 O ILE A 191 N VAL A 188 SHEET 3 AA 3 PHE A 232 PHE A 234 -1 O PHE A 232 N LEU A 195 SHEET 1 AB 5 VAL A 222 GLY A 226 0 SHEET 2 AB 5 VAL A 268 ASN A 274 1 O VAL A 268 N ARG A 223 SHEET 3 AB 5 ASP A 278 SER A 284 -1 O ILE A 280 N ALA A 273 SHEET 4 AB 5 GLY A 363 ARG A 371 -1 O VAL A 366 N ILE A 283 SHEET 5 AB 5 SER A 353 LEU A 359 -1 O SER A 353 N ARG A 369 LINK OD1 ASN A 249 MG MG A1379 1555 1555 2.27 LINK O VAL A 298 K K A1380 1555 1555 2.87 LINK O ASP A 300 K K A1380 1555 1555 2.80 LINK N PHE A 303 K K A1380 1555 1555 3.71 LINK O PHE A 303 K K A1380 1555 1555 2.87 LINK O GLY A 337 K K A1380 1555 1555 3.11 LINK MG MG A1379 O2B AGS A1383 1555 1555 2.38 LINK MG MG A1379 O1A AGS A1383 1555 1555 2.34 LINK MG MG A1379 O2G AGS A1383 1555 1555 2.38 LINK MG MG A1379 O HOH A2039 1555 1555 2.38 LINK MG MG A1379 O HOH A2069 1555 1555 2.32 LINK K K A1380 O2A AGS A1383 1555 1555 3.04 CISPEP 1 THR A 41 PRO A 42 0 -0.46 SITE 1 AC1 4 ASN A 249 AGS A1383 HOH A2039 HOH A2069 SITE 1 AC2 6 VAL A 298 ASP A 300 PHE A 303 GLY A 337 SITE 2 AC2 6 PRO A 341 AGS A1383 SITE 1 AC3 1 ARG A 71 SITE 1 AC4 1 PHE A 109 SITE 1 AC5 21 GLU A 245 ASN A 249 ALA A 253 ASP A 285 SITE 2 AC5 21 GLY A 289 VAL A 298 THR A 304 THR A 305 SITE 3 AC5 21 GLY A 335 PHE A 336 GLY A 337 PHE A 338 SITE 4 AC5 21 GLY A 339 LEU A 340 PRO A 341 THR A 364 SITE 5 AC5 21 MG A1379 K A1380 HOH A2053 HOH A2069 SITE 6 AC5 21 HOH A2070 CRYST1 127.722 127.722 74.314 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007829 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013456 0.00000