PDB Short entry for 1GO0 HEADER RIBOSOMAL PROTEIN 15-OCT-01 1GO0 TITLE NMR STRUCTURE OF RIBOSOMAL PROTEIN L30E FROM THERMOCOCCUS CELER COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L30E; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS CELER; SOURCE 3 ORGANISM_TAXID: 2264; SOURCE 4 ATCC: 35543; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSET-A KEYWDS RIBOSOMAL PROTEIN, RNA-BINDING, RIBOSOME, THERMOPHILIC EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.-H.CHAN,M.BYCROFT,S.M.V.FREUND,K.-B.WONG REVDAT 5 15-JAN-20 1GO0 1 REMARK REVDAT 4 24-JAN-18 1GO0 1 SOURCE REVDAT 3 24-FEB-09 1GO0 1 VERSN REVDAT 2 04-JUL-03 1GO0 1 JRNL REVDAT 1 12-JUN-03 1GO0 0 JRNL AUTH K.-B.WONG,C.-F.LEE,S.-H.CHAN,T.-Y.LEUNG,Y.W.CHEN,M.BYCROFT JRNL TITL SOLUTION STRUCTURE AND THERMAL STABILITY OF RIBOSOMAL JRNL TITL 2 PROTEIN L30E FROM HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS JRNL TITL 3 CELER JRNL REF PROTEIN SCI. V. 12 1483 2003 JRNL REFN ISSN 0961-8368 JRNL PMID 12824494 JRNL DOI 10.1110/PS.0302303 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.BAN,P.NISSEN,J.HANSEN,P.B.MOORE,T.A.STEITZ REMARK 1 TITL THE COMPLETE ATOMIC STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT REMARK 1 TITL 2 AT 2.4 A RESOLUTION REMARK 1 REF SCIENCE V. 289 905 2000 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 10937989 REMARK 1 DOI 10.1126/SCIENCE.289.5481.905 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.MAO,J.R.WILLAMSON REMARK 1 TITL LOCAL FOLDING COUPLED TO RNA BINDING IN THE YEAST RIBOSOMAL REMARK 1 TITL 2 PROTEIN L30 REMARK 1 REF J.MOL.BIOL. V. 292 345 1999 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 10493880 REMARK 1 DOI 10.1006/JMBI.1999.3044 REMARK 1 REFERENCE 3 REMARK 1 AUTH H.MAO,S.A.WHITE,J.R.WILLAMSON REMARK 1 TITL A NOVEL LOOP-LOOP RECOGNITION MOTIF IN THE YEAST RIBOSOMAL REMARK 1 TITL 2 PROTEIN L30 AUTOREGULATORY RNA COMPLEX REMARK 1 REF NAT.STRUCT.BIOL. V. 6 1139 1999 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 10581556 REMARK 1 DOI 10.1038/70081 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER ET AL., LINGE ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GO0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1290008700. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 5.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM SODIUM ACETATE, 0.5M NA2SO4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; 15N-NOESY-HSQC; REMARK 210 13C-NOESY-HSQC; 13C-HSQC-NOESY- REMARK 210 HSQC; HNCA; HN(CO)CA; HNCACB; REMARK 210 CBCA(CO)NH; HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, CNS, ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING USING REMARK 210 AMBIGUOUS NOES REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTUER WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 EXPERIMENTS ON 13C/15N LABELLED SAMPLE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 MEMBER OF THE L30E FAMILY OF RIBOSOMAL PROTEINS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 20 -61.54 -164.82 REMARK 500 1 MET A 29 24.06 -147.53 REMARK 500 1 ASN A 40 35.21 -88.81 REMARK 500 1 PRO A 77 43.20 -76.54 REMARK 500 1 HIS A 78 34.44 -144.79 REMARK 500 1 THR A 79 73.16 47.88 REMARK 500 2 PHE A 3 -50.99 72.66 REMARK 500 2 ASN A 40 31.68 -88.56 REMARK 500 2 PRO A 77 42.16 -75.00 REMARK 500 2 ASP A 87 75.32 -118.64 REMARK 500 2 PRO A 88 47.93 -92.46 REMARK 500 2 ARG A 92 32.31 -87.27 REMARK 500 3 SER A -1 39.28 -81.47 REMARK 500 3 PHE A 3 -51.17 73.75 REMARK 500 3 ALA A 20 -57.96 -160.81 REMARK 500 3 ASN A 40 42.86 -80.53 REMARK 500 3 HIS A 78 46.72 -83.16 REMARK 500 3 THR A 79 170.01 55.24 REMARK 500 3 PRO A 88 41.09 -96.15 REMARK 500 3 ARG A 92 33.30 -98.72 REMARK 500 3 LYS A 99 -51.83 69.50 REMARK 500 4 PHE A 3 42.06 -73.41 REMARK 500 4 PRO A 77 42.25 -78.75 REMARK 500 4 PRO A 88 48.63 -86.23 REMARK 500 4 ARG A 92 41.10 -97.29 REMARK 500 5 SER A -1 47.86 -79.17 REMARK 500 5 VAL A 1 -120.41 54.05 REMARK 500 5 PRO A 77 38.48 -69.87 REMARK 500 5 HIS A 78 140.34 -172.57 REMARK 500 5 ARG A 92 44.85 -104.03 REMARK 500 6 PHE A 3 -54.37 71.67 REMARK 500 6 ALA A 20 -112.60 59.79 REMARK 500 6 ASN A 40 33.32 -84.76 REMARK 500 6 GLU A 64 49.65 -77.22 REMARK 500 6 PRO A 77 47.95 -76.48 REMARK 500 6 ARG A 92 49.69 -100.39 REMARK 500 7 VAL A 1 -147.25 41.08 REMARK 500 7 ASP A 2 129.46 -171.31 REMARK 500 7 PHE A 3 26.91 -166.85 REMARK 500 7 GLU A 64 48.65 -75.68 REMARK 500 7 PRO A 77 41.33 -73.37 REMARK 500 7 ARG A 92 36.09 -87.73 REMARK 500 8 ASP A 2 -44.61 -149.88 REMARK 500 8 ALA A 20 -59.71 -165.09 REMARK 500 8 ASN A 40 40.74 -92.78 REMARK 500 8 SER A 56 -140.08 -83.41 REMARK 500 8 PRO A 77 45.26 -77.68 REMARK 500 8 THR A 79 89.12 -67.79 REMARK 500 8 ARG A 92 45.71 -77.79 REMARK 500 8 LYS A 99 117.71 -173.60 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 TYR A 52 0.06 SIDE CHAIN REMARK 500 8 TYR A 52 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GO1 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF RIBOSOMAL PROTEIN L30E FROM THERMOCOCCUS CELER. REMARK 900 RELATED ID: 1H7M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L30E FROM THERMOCOCCUS CELER. REMARK 900 RELATED ID: 5485 RELATED DB: BMRB DBREF 1GO0 A -2 -1 PDB 1GO0 1GO0 -2 -1 DBREF 1GO0 A 1 100 UNP P29160 RL3E_THECE 2 101 SEQRES 1 A 102 GLY SER VAL ASP PHE ALA PHE GLU LEU ARG LYS ALA GLN SEQRES 2 A 102 ASP THR GLY LYS ILE VAL MET GLY ALA ARG LYS SER ILE SEQRES 3 A 102 GLN TYR ALA LYS MET GLY GLY ALA LYS LEU ILE ILE VAL SEQRES 4 A 102 ALA ARG ASN ALA ARG PRO ASP ILE LYS GLU ASP ILE GLU SEQRES 5 A 102 TYR TYR ALA ARG LEU SER GLY ILE PRO VAL TYR GLU PHE SEQRES 6 A 102 GLU GLY THR SER VAL GLU LEU GLY THR LEU LEU GLY ARG SEQRES 7 A 102 PRO HIS THR VAL SER ALA LEU ALA VAL VAL ASP PRO GLY SEQRES 8 A 102 GLU SER ARG ILE LEU ALA LEU GLY GLY LYS GLU HELIX 1 1 ASP A 2 THR A 13 1 12 HELIX 2 2 ALA A 20 GLY A 30 1 11 HELIX 3 3 ARG A 42 GLY A 57 1 16 HELIX 4 4 THR A 66 GLY A 75 1 10 HELIX 5 5 ARG A 92 LEU A 96 5 5 SHEET 1 AA 4 LYS A 15 GLY A 19 0 SHEET 2 AA 4 ALA A 82 ASP A 87 -1 O ALA A 82 N GLY A 19 SHEET 3 AA 4 LEU A 34 ALA A 38 -1 O LEU A 34 N VAL A 85 SHEET 4 AA 4 VAL A 60 PHE A 63 1 O TYR A 61 N VAL A 37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000