PDB Short entry for 1GOF HEADER OXIDOREDUCTASE(OXYGEN(A)) 30-SEP-93 1GOF TITLE NOVEL THIOETHER BOND REVEALED BY A 1.7 ANGSTROMS CRYSTAL STRUCTURE OF TITLE 2 GALACTOSE OXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOSE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.3.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPOMYCES ROSELLUS; SOURCE 3 ORGANISM_TAXID: 5132 KEYWDS OXIDOREDUCTASE(OXYGEN(A)) EXPDTA X-RAY DIFFRACTION AUTHOR N.ITO,S.E.V.PHILLIPS,P.F.KNOWLES REVDAT 6 26-JUL-23 1GOF 1 REMARK SSBOND LINK SCALE REVDAT 6 2 1 ATOM REVDAT 5 29-NOV-17 1GOF 1 HELIX REVDAT 4 13-JUL-11 1GOF 1 VERSN REVDAT 3 24-FEB-09 1GOF 1 VERSN REVDAT 2 01-APR-03 1GOF 1 JRNL REVDAT 1 31-JAN-94 1GOF 0 JRNL AUTH N.ITO,S.E.PHILLIPS,C.STEVENS,Z.B.OGEL,M.J.MCPHERSON, JRNL AUTH 2 J.N.KEEN,K.D.YADAV,P.F.KNOWLES JRNL TITL NOVEL THIOETHER BOND REVEALED BY A 1.7 A CRYSTAL STRUCTURE JRNL TITL 2 OF GALACTOSE OXIDASE. JRNL REF NATURE V. 350 87 1991 JRNL REFN ISSN 0028-0836 JRNL PMID 2002850 JRNL DOI 10.1038/350087A0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.ITO,S.E.V.PHILLIPS,K.K.S.YADAV,P.F.KNOWLES REMARK 1 TITL THE CRYSTAL STRUCTURE OF A FREE RADICAL ENZYME, GALACTOSE REMARK 1 TITL 2 OXIDASE REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH M.J.MCPHERSON,Z.B.OGEL,C.STEVENS,K.D.S.YADAV,J.M.KEEN, REMARK 1 AUTH 2 P.F.KNOWLES REMARK 1 TITL GALACTOSE OXIDASE OF DACTYLIUM DENDROIDES: GENE CLONING AND REMARK 1 TITL 2 SEQUENCE ANALYSIS REMARK 1 REF J.BIOL.CHEM. V. 267 8146 1992 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4830 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.018 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.00000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 450 REMARK 450 SOURCE REMARK 450 THERE IS SOME UNCERTAINTY AS TO THE EXACT TYPING OF THE REMARK 450 FUNGUS DACTYLIUM DENDROIDES. (SEE REFERENCE 2). REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 228 CE1 TYR A 272 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 20 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 SER A 20 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 81 O - C - N ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 84 CD - NE - CZ ANGL. DEV. = 33.0 DEGREES REMARK 500 ARG A 84 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 GLU A 86 OE1 - CD - OE2 ANGL. DEV. = 12.5 DEGREES REMARK 500 TYR A 88 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR A 88 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 92 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ALA A 101 O - C - N ANGL. DEV. = 10.1 DEGREES REMARK 500 SER A 104 O - C - N ANGL. DEV. = 11.3 DEGREES REMARK 500 TYR A 113 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 SER A 114 N - CA - CB ANGL. DEV. = 19.4 DEGREES REMARK 500 THR A 118 O - C - N ANGL. DEV. = 12.0 DEGREES REMARK 500 ARG A 119 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 TYR A 151 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 160 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 160 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 166 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ALA A 173 N - CA - CB ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 182 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 TYR A 189 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A 189 CB - CG - CD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 190 NE - CZ - NH1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 190 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLY A 200 N - CA - C ANGL. DEV. = 19.4 DEGREES REMARK 500 GLY A 200 CA - C - O ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 217 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 217 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 PHE A 227 CB - CG - CD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 234 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 234 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 246 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ALA A 247 CB - CA - C ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 254 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 258 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 TYR A 272 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 282 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 282 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 THR A 310 O - C - N ANGL. DEV. = 10.5 DEGREES REMARK 500 LYS A 316 O - C - N ANGL. DEV. = 12.9 DEGREES REMARK 500 ASP A 324 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TYR A 329 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 330 NE - CZ - NH1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG A 330 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR A 357 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 375 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 91 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 60 -32.85 74.78 REMARK 500 SER A 187 -93.47 -117.61 REMARK 500 SER A 188 -148.99 -158.81 REMARK 500 ALA A 323 32.36 -98.43 REMARK 500 SER A 432 -131.29 51.72 REMARK 500 ASP A 466 42.46 -86.12 REMARK 500 THR A 468 51.43 33.55 REMARK 500 VAL A 494 -133.43 -118.00 REMARK 500 LEU A 514 53.10 81.85 REMARK 500 PHE A 523 50.55 -90.28 REMARK 500 THR A 580 141.59 -173.46 REMARK 500 THR A 582 -8.18 82.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 29 O REMARK 620 2 ASP A 32 OD1 66.8 REMARK 620 3 ASN A 34 O 159.6 93.0 REMARK 620 4 THR A 37 O 104.2 139.4 88.9 REMARK 620 5 THR A 37 OG1 93.6 70.5 75.8 70.7 REMARK 620 6 ALA A 141 O 88.6 135.2 109.1 81.1 151.5 REMARK 620 7 GLU A 142 OE2 94.0 69.6 81.1 150.2 132.2 75.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 700 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 272 OH REMARK 620 2 TYR A 495 OH 75.2 REMARK 620 3 HIS A 496 NE2 172.2 105.6 REMARK 620 4 HIS A 581 NE2 99.1 97.2 88.6 REMARK 620 5 ACY A 703 OXT 82.8 90.6 89.5 172.2 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET PRESENTED AS *S9* ON SHEET RECORDS BELOW IS REMARK 700 ACTUALLY A SEVEN-STRANDED BETA-BARREL. THIS IS REPRESENTED REMARK 700 BY AN EIGHT-STRANDED SHEET IN WHICH THE FIRST AND LAST REMARK 700 STRANDS ARE IDENTICAL. REMARK 700 DOMAIN 3 (RESIDUES 553 - 639) HAS A VERY COMPLICATED REMARK 700 HYDROGEN BONDING NETWORK WHICH IS DIFFICULT TO DESCRIBE. REMARK 700 IN THE SHEET RECORDS BELOW, THIS IS SIMPLIFIED BY REGARDING REMARK 700 SEVERAL PAIRS OF BETA-STRANDS AS ONE. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CU REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: COPPER BINDING SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: NA REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: SODIUM BINDING SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 703 DBREF 1GOF A 1 639 UNP Q01745 GAOA_DACDE 42 680 SEQRES 1 A 639 ALA SER ALA PRO ILE GLY SER ALA ILE SER ARG ASN ASN SEQRES 2 A 639 TRP ALA VAL THR CYS ASP SER ALA GLN SER GLY ASN GLU SEQRES 3 A 639 CYS ASN LYS ALA ILE ASP GLY ASN LYS ASP THR PHE TRP SEQRES 4 A 639 HIS THR PHE TYR GLY ALA ASN GLY ASP PRO LYS PRO PRO SEQRES 5 A 639 HIS THR TYR THR ILE ASP MET LYS THR THR GLN ASN VAL SEQRES 6 A 639 ASN GLY LEU SER MET LEU PRO ARG GLN ASP GLY ASN GLN SEQRES 7 A 639 ASN GLY TRP ILE GLY ARG HIS GLU VAL TYR LEU SER SER SEQRES 8 A 639 ASP GLY THR ASN TRP GLY SER PRO VAL ALA SER GLY SER SEQRES 9 A 639 TRP PHE ALA ASP SER THR THR LYS TYR SER ASN PHE GLU SEQRES 10 A 639 THR ARG PRO ALA ARG TYR VAL ARG LEU VAL ALA ILE THR SEQRES 11 A 639 GLU ALA ASN GLY GLN PRO TRP THR SER ILE ALA GLU ILE SEQRES 12 A 639 ASN VAL PHE GLN ALA SER SER TYR THR ALA PRO GLN PRO SEQRES 13 A 639 GLY LEU GLY ARG TRP GLY PRO THR ILE ASP LEU PRO ILE SEQRES 14 A 639 VAL PRO ALA ALA ALA ALA ILE GLU PRO THR SER GLY ARG SEQRES 15 A 639 VAL LEU MET TRP SER SER TYR ARG ASN ASP ALA PHE GLY SEQRES 16 A 639 GLY SER PRO GLY GLY ILE THR LEU THR SER SER TRP ASP SEQRES 17 A 639 PRO SER THR GLY ILE VAL SER ASP ARG THR VAL THR VAL SEQRES 18 A 639 THR LYS HIS ASP MET PHE CYS PRO GLY ILE SER MET ASP SEQRES 19 A 639 GLY ASN GLY GLN ILE VAL VAL THR GLY GLY ASN ASP ALA SEQRES 20 A 639 LYS LYS THR SER LEU TYR ASP SER SER SER ASP SER TRP SEQRES 21 A 639 ILE PRO GLY PRO ASP MET GLN VAL ALA ARG GLY TYR GLN SEQRES 22 A 639 SER SER ALA THR MET SER ASP GLY ARG VAL PHE THR ILE SEQRES 23 A 639 GLY GLY SER TRP SER GLY GLY VAL PHE GLU LYS ASN GLY SEQRES 24 A 639 GLU VAL TYR SER PRO SER SER LYS THR TRP THR SER LEU SEQRES 25 A 639 PRO ASN ALA LYS VAL ASN PRO MET LEU THR ALA ASP LYS SEQRES 26 A 639 GLN GLY LEU TYR ARG SER ASP ASN HIS ALA TRP LEU PHE SEQRES 27 A 639 GLY TRP LYS LYS GLY SER VAL PHE GLN ALA GLY PRO SER SEQRES 28 A 639 THR ALA MET ASN TRP TYR TYR THR SER GLY SER GLY ASP SEQRES 29 A 639 VAL LYS SER ALA GLY LYS ARG GLN SER ASN ARG GLY VAL SEQRES 30 A 639 ALA PRO ASP ALA MET CYS GLY ASN ALA VAL MET TYR ASP SEQRES 31 A 639 ALA VAL LYS GLY LYS ILE LEU THR PHE GLY GLY SER PRO SEQRES 32 A 639 ASP TYR GLN ASP SER ASP ALA THR THR ASN ALA HIS ILE SEQRES 33 A 639 ILE THR LEU GLY GLU PRO GLY THR SER PRO ASN THR VAL SEQRES 34 A 639 PHE ALA SER ASN GLY LEU TYR PHE ALA ARG THR PHE HIS SEQRES 35 A 639 THR SER VAL VAL LEU PRO ASP GLY SER THR PHE ILE THR SEQRES 36 A 639 GLY GLY GLN ARG ARG GLY ILE PRO PHE GLU ASP SER THR SEQRES 37 A 639 PRO VAL PHE THR PRO GLU ILE TYR VAL PRO GLU GLN ASP SEQRES 38 A 639 THR PHE TYR LYS GLN ASN PRO ASN SER ILE VAL ARG VAL SEQRES 39 A 639 TYR HIS SER ILE SER LEU LEU LEU PRO ASP GLY ARG VAL SEQRES 40 A 639 PHE ASN GLY GLY GLY GLY LEU CYS GLY ASP CYS THR THR SEQRES 41 A 639 ASN HIS PHE ASP ALA GLN ILE PHE THR PRO ASN TYR LEU SEQRES 42 A 639 TYR ASN SER ASN GLY ASN LEU ALA THR ARG PRO LYS ILE SEQRES 43 A 639 THR ARG THR SER THR GLN SER VAL LYS VAL GLY GLY ARG SEQRES 44 A 639 ILE THR ILE SER THR ASP SER SER ILE SER LYS ALA SER SEQRES 45 A 639 LEU ILE ARG TYR GLY THR ALA THR HIS THR VAL ASN THR SEQRES 46 A 639 ASP GLN ARG ARG ILE PRO LEU THR LEU THR ASN ASN GLY SEQRES 47 A 639 GLY ASN SER TYR SER PHE GLN VAL PRO SER ASP SER GLY SEQRES 48 A 639 VAL ALA LEU PRO GLY TYR TRP MET LEU PHE VAL MET ASN SEQRES 49 A 639 SER ALA GLY VAL PRO SER VAL ALA SER THR ILE ARG VAL SEQRES 50 A 639 THR GLN HET CU A 700 1 HET NA A 702 1 HET ACY A 701 4 HET ACY A 703 4 HETNAM CU COPPER (II) ION HETNAM NA SODIUM ION HETNAM ACY ACETIC ACID FORMUL 2 CU CU 2+ FORMUL 3 NA NA 1+ FORMUL 4 ACY 2(C2 H4 O2) FORMUL 6 HOH *316(H2 O) HELIX 1 H1 LEU A 328 SER A 331 1THE ONLY A-HELIX 4 SHEET 1 S1 9 ALA A 15 CYS A 18 0 SHEET 2 S1 9 HIS A 53 ASP A 58 -1 N THR A 56 O THR A 17 SHEET 3 S1 9 TYR A 123 ALA A 128 -1 N LEU A 126 O TYR A 55 SHEET 4 S1 9 ARG A 84 SER A 90 -1 N TYR A 88 O ARG A 125 SHEET 5 S1 9 ALA A 101 SER A 104 -1 N GLY A 103 O HIS A 85 SHEET 6 S1 9 ARG A 160 ASP A 166 1 N ASP A 166 O SER A 102 SHEET 7 S1 9 ASP A 524 THR A 529 -1 N ILE A 527 O PRO A 163 SHEET 8 S1 9 VAL A 507 GLY A 511 -1 N ASN A 509 O GLN A 526 SHEET 9 S1 9 SER A 497 LEU A 501 -1 N LEU A 500 O PHE A 508 SHEET 1 S2 3 LYS A 112 ALA A 121 0 SHEET 2 S2 3 GLN A 63 LEU A 71 -1 N LEU A 68 O SER A 114 SHEET 3 S2 3 GLU A 142 GLN A 147 -1 N PHE A 146 O GLY A 67 SHEET 1 S3 5 VAL A 214 VAL A 219 0 SHEET 2 S3 5 THR A 202 TRP A 207 -1 N SER A 206 O SER A 215 SHEET 3 S3 5 VAL A 183 TRP A 186 -1 N MET A 185 O SER A 205 SHEET 4 S3 5 ALA A 173 ILE A 176 -1 N ALA A 175 O LEU A 184 SHEET 5 S3 5 THR A 578 THR A 580 -1 N ALA A 579 O ALA A 174 SHEET 1 S4 4 GLY A 230 MET A 233 0 SHEET 2 S4 4 GLN A 238 THR A 242 -1 N VAL A 240 O SER A 232 SHEET 3 S4 4 THR A 250 ASP A 254 -1 N TYR A 253 O ILE A 239 SHEET 4 S4 4 SER A 259 PRO A 262 -1 N ILE A 261 O LEU A 252 SHEET 1 S5 4 SER A 274 THR A 277 0 SHEET 2 S5 4 VAL A 283 ILE A 286 -1 N PHE A 284 O ALA A 276 SHEET 3 S5 4 GLY A 299 SER A 303 -1 N TYR A 302 O VAL A 283 SHEET 4 S5 4 THR A 308 LEU A 312 -1 N THR A 310 O VAL A 301 SHEET 1 S6 4 LEU A 337 GLY A 339 0 SHEET 2 S6 4 VAL A 345 GLN A 347 -1 N PHE A 346 O PHE A 338 SHEET 3 S6 4 ALA A 353 TYR A 358 -1 N TYR A 357 O VAL A 345 SHEET 4 S6 4 ASP A 364 LYS A 370 -1 N LYS A 366 O TRP A 356 SHEET 1 S7 4 ASN A 385 ASP A 390 0 SHEET 2 S7 4 LYS A 395 PHE A 399 -1 N LEU A 397 O VAL A 387 SHEET 3 S7 4 ALA A 414 THR A 418 -1 N ILE A 417 O ILE A 396 SHEET 4 S7 4 ASN A 427 PHE A 430 -1 N VAL A 429 O ILE A 416 SHEET 1 S8 4 THR A 443 VAL A 446 0 SHEET 2 S8 4 SER A 451 THR A 455 -1 N PHE A 453 O VAL A 445 SHEET 3 S8 4 GLU A 474 VAL A 477 -1 N TYR A 476 O THR A 452 SHEET 4 S8 4 THR A 482 LYS A 485 -1 N TYR A 484 O ILE A 475 SHEET 1 S9 8 ILE A 546 LYS A 555 0 SHEET 2 S9 8 ARG A 559 THR A 564 -1 N SER A 563 O ARG A 548 SHEET 3 S9 8 SER A 601 GLN A 605 -1 N TYR A 602 O ILE A 562 SHEET 4 S9 8 ARG A 589 ASN A 596 -1 N THR A 595 O SER A 603 SHEET 5 S9 8 LYS A 570 ARG A 575 -1 N LEU A 573 O ILE A 590 SHEET 6 S9 8 GLY A 616 MET A 623 -1 N PHE A 621 O SER A 572 SHEET 7 S9 8 SER A 633 THR A 638 -1 N SER A 633 O LEU A 620 SHEET 8 S9 8 ILE A 546 LYS A 555 1 N VAL A 554 O ARG A 636 SSBOND 1 CYS A 18 CYS A 27 1555 1555 1.96 SSBOND 2 CYS A 515 CYS A 518 1555 1555 2.04 LINK O LYS A 29 NA NA A 702 1555 1555 2.14 LINK OD1 ASP A 32 NA NA A 702 1555 1555 2.28 LINK O ASN A 34 NA NA A 702 1555 1555 2.22 LINK O THR A 37 NA NA A 702 1555 1555 2.01 LINK OG1 THR A 37 NA NA A 702 1555 1555 2.61 LINK O ALA A 141 NA NA A 702 1555 1555 2.36 LINK OE2 GLU A 142 NA NA A 702 1555 1555 2.62 LINK OH TYR A 272 CU CU A 700 1555 1555 1.93 LINK OH TYR A 495 CU CU A 700 1555 1555 2.69 LINK NE2 HIS A 496 CU CU A 700 1555 1555 2.11 LINK NE2 HIS A 581 CU CU A 700 1555 1555 2.14 LINK CU CU A 700 OXT ACY A 703 1555 1555 2.26 CISPEP 1 PRO A 51 PRO A 52 0 2.53 CISPEP 2 GLY A 162 PRO A 163 0 -1.03 CISPEP 3 GLY A 349 PRO A 350 0 3.02 SITE 1 CU 5 TYR A 272 TYR A 495 HIS A 496 HIS A 581 SITE 2 CU 5 ACY A 703 SITE 1 NA 6 LYS A 29 ASP A 32 ASN A 34 THR A 37 SITE 2 NA 6 ALA A 141 GLU A 142 SITE 1 AC1 7 PHE A 227 CYS A 228 TYR A 272 TYR A 495 SITE 2 AC1 7 HIS A 496 HIS A 581 ACY A 703 SITE 1 AC2 6 LYS A 29 ASP A 32 ASN A 34 THR A 37 SITE 2 AC2 6 ALA A 141 GLU A 142 SITE 1 AC3 7 ARG A 371 ALA A 378 ALA A 381 THR A 398 SITE 2 AC3 7 GLY A 400 HIS A 415 HOH A 768 SITE 1 AC4 9 PHE A 194 PHE A 227 TYR A 272 TRP A 290 SITE 2 AC4 9 PHE A 464 TYR A 495 HIS A 496 CU A 700 SITE 3 AC4 9 HOH A 973 CRYST1 98.000 89.400 86.700 90.00 117.80 90.00 C 1 2 1 4 ORIGX1 0.884579 0.000000 0.466389 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 -0.466389 0.000000 0.884579 0.00000 SCALE1 0.010204 0.000000 0.005380 0.00000 SCALE2 0.000000 0.011186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013039 0.00000