PDB Short entry for 1GOX HEADER OXIDOREDUCTASE (OXYGEN(A)) 14-JUN-89 1GOX TITLE REFINED STRUCTURE OF SPINACH GLYCOLATE OXIDASE AT 2 ANGSTROMS TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: (S)-2-HYDROXY-ACID OXIDASE, PEROXISOMAL; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPINACIA OLERACEA; SOURCE 3 ORGANISM_COMMON: SPINACH; SOURCE 4 ORGANISM_TAXID: 3562 KEYWDS OXIDOREDUCTASE (OXYGEN(A)) EXPDTA X-RAY DIFFRACTION AUTHOR Y.LINDQVIST REVDAT 4 13-JUL-11 1GOX 1 VERSN REVDAT 3 24-FEB-09 1GOX 1 VERSN REVDAT 2 01-APR-03 1GOX 1 JRNL REVDAT 1 15-OCT-89 1GOX 0 JRNL AUTH Y.LINDQVIST JRNL TITL REFINED STRUCTURE OF SPINACH GLYCOLATE OXIDASE AT 2 A JRNL TITL 2 RESOLUTION. JRNL REF J.MOL.BIOL. V. 209 151 1989 JRNL REFN ISSN 0022-2836 JRNL PMID 2681790 JRNL DOI 10.1016/0022-2836(89)90178-2 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.LINDQVIST,C.-I.BRANDEN REMARK 1 TITL THE ACTIVE SITE OF SPINACH GLYCOLATE OXIDASE REMARK 1 REF J.BIOL.CHEM. V. 264 3624 1989 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.CEDERLUND,Y.LINDQVIST,G.SODERLUND,C.-I.BRANDEN,H.JORNVALL REMARK 1 TITL PRIMARY STRUCTURE OF GLYCOLATE OXIDASE FROM SPINACH REMARK 1 REF EUR.J.BIOCHEM. V. 173 523 1988 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 3 REMARK 1 AUTH Y.LINDQVIST,C.-I.BRANDEN REMARK 1 TITL STRUCTURE OF GLYCOLATE OXIDASE FROM SPINACH REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 82 6855 1985 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 4 REMARK 1 AUTH Y.LINDQVIST,C.-I.BRANDEN REMARK 1 TITL STRUCTURE OF GLYCOLATE OXIDASE FROM SPINACH AT A RESOLUTION REMARK 1 TITL 2 OF 5.5 ANGSTROMS REMARK 1 REF J.MOL.BIOL. V. 143 201 1980 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH Y.LINDQVIST,C.-I.BRANDEN REMARK 1 TITL PRELIMINARY CRYSTALLOGRAPHIC DATA FOR GLYCOLATE OXIDASE FROM REMARK 1 TITL 2 SPINACH REMARK 1 REF J.BIOL.CHEM. V. 254 7403 1979 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2699 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.015 ; 0.030 REMARK 3 ANGLE DISTANCE (A) : 0.043 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.046 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.011 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.173 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.194 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.200 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.223 ; 0.500 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.000 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 19.500; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.312 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.452 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.813 ; 1.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.521 ; 1.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GOX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 74.05000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 74.05000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.55000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 74.05000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 74.05000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 67.55000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 74.05000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 74.05000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 67.55000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 74.05000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 74.05000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 67.55000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 74.05000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.05000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 67.55000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 74.05000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 74.05000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.55000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 74.05000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 74.05000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.55000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 74.05000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 74.05000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 148.10000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 148.10000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 148.10000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 148.10000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 36260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 89660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -182.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 148.10000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 148.10000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 148.10000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 148.10000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 148.10000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 148.10000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 148.10000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 148.10000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 668 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 189 REMARK 465 LYS A 190 REMARK 465 MET A 191 REMARK 465 ASP A 192 REMARK 465 LYS A 193 REMARK 465 ALA A 194 REMARK 465 ASN A 195 REMARK 465 ASP A 196 REMARK 465 SER A 197 REMARK 465 GLY A 360 REMARK 465 PRO A 361 REMARK 465 SER A 362 REMARK 465 SER A 363 REMARK 465 ARG A 364 REMARK 465 ALA A 365 REMARK 465 VAL A 366 REMARK 465 ALA A 367 REMARK 465 ARG A 368 REMARK 465 LEU A 369 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 37 NH2 ARG A 44 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 656 O HOH A 656 16555 2.09 REMARK 500 O HOH A 405 O HOH A 428 4565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 2 OE1 - CD - OE2 ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ALA A 98 CB - CA - C ANGL. DEV. = 10.9 DEGREES REMARK 500 TRP A 108 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 TRP A 108 CA - CB - CG ANGL. DEV. = 12.8 DEGREES REMARK 500 VAL A 113 CA - CB - CG2 ANGL. DEV. = 9.0 DEGREES REMARK 500 GLU A 114 CG - CD - OE1 ANGL. DEV. = 12.6 DEGREES REMARK 500 LEU A 128 N - CA - CB ANGL. DEV. = -14.2 DEGREES REMARK 500 LEU A 128 CA - CB - CG ANGL. DEV. = 25.7 DEGREES REMARK 500 ARG A 142 CD - NE - CZ ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 142 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 143 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 160 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 160 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 163 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 164 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 209 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 239 NH1 - CZ - NH2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 239 NE - CZ - NH1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 257 CD - NE - CZ ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG A 331 CD - NE - CZ ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG A 331 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 331 NE - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ASP A 332 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 357 CB - CG - OD2 ANGL. DEV. = 11.0 DEGREES REMARK 500 ASP A 359 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 359 CB - CG - OD2 ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 30 -110.91 38.77 REMARK 500 PRO A 72 31.86 -88.01 REMARK 500 THR A 78 -108.59 -113.93 REMARK 500 ALA A 79 149.57 174.57 REMARK 500 MET A 80 54.23 37.06 REMARK 500 GLN A 258 -99.99 -93.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 114 24.9 L L OUTSIDE RANGE REMARK 500 TYR A 261 24.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 529 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 540 DISTANCE = 5.46 ANGSTROMS REMARK 525 HOH A 558 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH A 565 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH A 578 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 597 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A 620 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH A 622 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A 626 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH A 636 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 641 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH A 643 DISTANCE = 5.79 ANGSTROMS REMARK 525 HOH A 668 DISTANCE = 5.51 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET PRESENTED AS *BAR* ON SHEET RECORDS BELOW IS REMARK 700 ACTUALLY AN EIGHT-STRANDED BETA-BARREL. THIS IS REMARK 700 REPRESENTED BY A NINE-STRANDED SHEET IN WHICH THE FIRST AND REMARK 700 LAST STRANDS ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 370 DBREF 1GOX A 1 369 UNP P05414 GOX_SPIOL 1 369 SEQRES 1 A 370 ACE MET GLU ILE THR ASN VAL ASN GLU TYR GLU ALA ILE SEQRES 2 A 370 ALA LYS GLN LYS LEU PRO LYS MET VAL TYR ASP TYR TYR SEQRES 3 A 370 ALA SER GLY ALA GLU ASP GLN TRP THR LEU ALA GLU ASN SEQRES 4 A 370 ARG ASN ALA PHE SER ARG ILE LEU PHE ARG PRO ARG ILE SEQRES 5 A 370 LEU ILE ASP VAL THR ASN ILE ASP MET THR THR THR ILE SEQRES 6 A 370 LEU GLY PHE LYS ILE SER MET PRO ILE MET ILE ALA PRO SEQRES 7 A 370 THR ALA MET GLN LYS MET ALA HIS PRO GLU GLY GLU TYR SEQRES 8 A 370 ALA THR ALA ARG ALA ALA SER ALA ALA GLY THR ILE MET SEQRES 9 A 370 THR LEU SER SER TRP ALA THR SER SER VAL GLU GLU VAL SEQRES 10 A 370 ALA SER THR GLY PRO GLY ILE ARG PHE PHE GLN LEU TYR SEQRES 11 A 370 VAL TYR LYS ASP ARG ASN VAL VAL ALA GLN LEU VAL ARG SEQRES 12 A 370 ARG ALA GLU ARG ALA GLY PHE LYS ALA ILE ALA LEU THR SEQRES 13 A 370 VAL ASP THR PRO ARG LEU GLY ARG ARG GLU ALA ASP ILE SEQRES 14 A 370 LYS ASN ARG PHE VAL LEU PRO PRO PHE LEU THR LEU LYS SEQRES 15 A 370 ASN PHE GLU GLY ILE ASP LEU GLY LYS MET ASP LYS ALA SEQRES 16 A 370 ASN ASP SER GLY LEU SER SER TYR VAL ALA GLY GLN ILE SEQRES 17 A 370 ASP ARG SER LEU SER TRP LYS ASP VAL ALA TRP LEU GLN SEQRES 18 A 370 THR ILE THR SER LEU PRO ILE LEU VAL LYS GLY VAL ILE SEQRES 19 A 370 THR ALA GLU ASP ALA ARG LEU ALA VAL GLN HIS GLY ALA SEQRES 20 A 370 ALA GLY ILE ILE VAL SER ASN HIS GLY ALA ARG GLN LEU SEQRES 21 A 370 ASP TYR VAL PRO ALA THR ILE MET ALA LEU GLU GLU VAL SEQRES 22 A 370 VAL LYS ALA ALA GLN GLY ARG ILE PRO VAL PHE LEU ASP SEQRES 23 A 370 GLY GLY VAL ARG ARG GLY THR ASP VAL PHE LYS ALA LEU SEQRES 24 A 370 ALA LEU GLY ALA ALA GLY VAL PHE ILE GLY ARG PRO VAL SEQRES 25 A 370 VAL PHE SER LEU ALA ALA GLU GLY GLU ALA GLY VAL LYS SEQRES 26 A 370 LYS VAL LEU GLN MET MET ARG ASP GLU PHE GLU LEU THR SEQRES 27 A 370 MET ALA LEU SER GLY CYS ARG SER LEU LYS GLU ILE SER SEQRES 28 A 370 ARG SER HIS ILE ALA ALA ASP TRP ASP GLY PRO SER SER SEQRES 29 A 370 ARG ALA VAL ALA ARG LEU HET ACE A 0 3 HET FMN A 370 31 HETNAM ACE ACETYL GROUP HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 ACE C2 H4 O FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 HOH *298(H2 O) HELIX 1 A GLU A 8 LYS A 16 1 9 HELIX 2 B LYS A 19 ALA A 26 1 8 HELIX 3 C GLN A 32 ASN A 40 1 9 HELIX 4 1 GLY A 88 ALA A 99 1 12 HELIX 5 2 VAL A 113 ALA A 117 1 5 HELIX 6 3 ARG A 134 ARG A 146 1 13 HELIX 7 D GLU A 165 LYS A 169 1 5 HELIX 8 E LEU A 199 GLN A 206 1 8 HELIX 9 4 TRP A 213 ILE A 222 1 10 HELIX 10 5 ALA A 235 GLN A 243 1 9 HELIX 11 6 THR A 265 ALA A 276 1 12 HELIX 12 7 GLY A 291 LEU A 300 1 10 HELIX 13 F ARG A 309 GLY A 319 1 11 HELIX 14 8 GLY A 319 SER A 341 1 23 SHEET 1 BAR 9 ILE A 73 ILE A 75 0 SHEET 2 BAR 9 MET A 103 LEU A 105 1 SHEET 3 BAR 9 ARG A 124 LEU A 128 1 SHEET 4 BAR 9 ALA A 151 THR A 155 1 SHEET 5 BAR 9 ILE A 227 LYS A 230 1 SHEET 6 BAR 9 GLY A 248 VAL A 251 1 SHEET 7 BAR 9 VAL A 282 ASP A 285 1 SHEET 8 BAR 9 GLY A 304 ILE A 307 1 SHEET 9 BAR 9 ILE A 73 ILE A 75 1 LINK C ACE A 0 N MET A 1 1555 1555 1.35 SITE 1 AC1 21 TYR A 24 TYR A 25 PRO A 77 THR A 78 SITE 2 AC1 21 GLN A 127 TYR A 129 THR A 155 LYS A 230 SITE 3 AC1 21 SER A 252 HIS A 254 GLY A 255 ARG A 257 SITE 4 AC1 21 ASP A 285 GLY A 286 GLY A 287 ARG A 289 SITE 5 AC1 21 GLY A 308 ARG A 309 HOH A 373 HOH A 404 SITE 6 AC1 21 HOH A 408 CRYST1 148.100 148.100 135.100 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006752 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007402 0.00000 HETATM 1 C ACE A 0 79.628 46.013 3.637 1.00 37.18 C HETATM 2 O ACE A 0 79.281 45.732 4.797 1.00 34.72 O HETATM 3 CH3 ACE A 0 80.437 45.070 2.784 1.00 36.67 C